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Abu Bakar Siddique

https://www.etis.ee/CV/Abu Bakar_Siddique/est
19.10.1985
+4915751957950
abu.ba.siddi@gmail.com

Teenistuskäik

Töökohad ja ametid
01.12.2013–31.05.2017   
Ernst Moritz Arndt University Greifswald Germany, Research assistant (scientific employee) (0,65)
01.07.2012–30.09.2012   
Umeå University, Sweden, Project student (1,00)
 
 
Haridustee
01.12.2013–18.09.2017   
Doktorikraad
24.08.2010–30.05.2013   
M.Sc. in Ecology
01.01.2008–30.06.2009   
M.Sc. in Plant Pathology
01.01.2004–30.12.2007   
Bachelor of Science in Agriculture (4 years)
 
 
Teadusorganisatsiooniline ja -administratiivne tegevus
2017−...   
Member of the British Mycological Society
2011−2013   
Executive and group secretary (PEBASA, Project for integration PREI, Sweden)
 
 
Lisainfo
Ph.D. Ernst Moritz Arndt University Greifswald, Germany, 2017

Kvalifikatsioon

Teaduskraadid
Abu Bakar Siddique, doktorikraad, 2017, (juh) PD Dr. Martin Unterseher, Leaf-inhabiting mycobiomes under different environmental conditions – local habitat conditions, leaf biochemistry and seasonal variations drive fungal community dynamics, Ernst-Moritz-Arndt Universität Greifswald, Germany
Abu Bakar Siddique, magistrikraad (teaduskraad), 2013, (juh) Dr. Benedicte R. Arbrectsen, The role of endophytic fungi in aspen leaves in the presence and absence of beetle damage, Umeå University
Abu Bakar Siddique, magistrikraad (teaduskraad), 2010, (juh) Dr. Abu Bakar, Efficacy of Trichoderma and some botanicals in controlling leaf blight of mustard and disease variability of pathogen, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
 
 
Teaduspreemiad ja tunnustused
2017, Abu Bakar Siddique, STSM (short scientific mission) in the COST Action FA1405
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B270 Taimeökoloogia ; TÄPSUSTUS: Molecular Mycology, Botany, Mycobiome biodiversity, Plant-microbes-insects interaction
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B270 Taimeökoloogia
 
 
Lisainfo
Doktorikraad in Ernst-Moritz-Arndt Universität, Greifswald, Germany (2017)

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2018
Unterseher, M.; Karunarathna, S.C.;Cruz, G.R...Siddique, A.B.... et al. (2018). Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and composition. Mycological Progress, 17 (4), 489−500. DOI: 10.1007/s11557-018-1375-8.
1.1.
2017
Siddique, A.B.; Khokon, A.M.; Unterseher, M. (2017). What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys, 1−1.10.3897/mycokeys.20.11265.
2.3.
2017
Siddique, A.B. (2017). Leaf-inhabiting mycobiomes under different environmental conditions – local habitat conditions, leaf biochemistry and seasonal variations drive fungal community dynamics. (Doktoritöö, Ernst-Moritz-Arndt Universität Greifswald, Germany). Greifswald, Germany: University of Greifswald.
1.1.
2016
Unterseher, M; Siddique, A.B.; Brachmann, A.; Peršoh, D. (2016). Diversity and composition of the leaf mycobiome of beech (Fagus sylvatica) are affected by local habitat conditions and leaf biochemistry. PLoS ONE. DOI: 10.1371/journal.pone.0152878.
1.1.
2016
Siddique A.B.; Unterseher M. (2016). A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition. Fungal Ecology, 20, 175−185.10.1016/j.funeco.2015.12.009.
6.7.
2013
Siddique, A.B. (2013). The role of endophytic fungi in aspen leaves in the presence and absence of beetle damage. (Magistritöö, Umeå University). Umeå, Sweden: Umeå University.
13.04.2022

Abu Bakar Siddique

https://www.etis.ee/CV/Abu Bakar_Siddique/eng
19.10.1985
+4915751957950
abu.ba.siddi@gmail.com

Career

Institutions and positions
01.12.2013–31.05.2017   
Ernst Moritz Arndt University Greifswald Germany, Scientific employee (PhD student) (0,65)
01.07.2012–30.09.2012   
Umeå University, Sweden, Project student (1,00)
 
 
Education
01.12.2013–18.09.2017   
PhD in Molecular Mycology, Ernst Moritz Arndt University Greifswald,Germany
24.08.2010–30.05.2013   
M.Sc. in Ecology, Umeå University, Sweden
01.01.2008–30.06.2009   
M.Sc. in Plant Pathology, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
01.01.2004–30.12.2007   
Bachelor of Science in Agriculture (4 years), Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
 
 
R&D related managerial and administrative work
2017−...   
Member of the British Mycological Society
2011−2013   
Executive and group secretary (PEBASA, Project for integration PREI, Sweden)
 
 
Additional information
Ph.D. Ernst Moritz Arndt University Greifswald, Germany, 2017

Qualifications

Academic degrees
Abu Bakar Siddique, Doctor's Degree, 2017, (sup) PD Dr. Martin Unterseher, Leaf-inhabiting mycobiomes under different environmental conditions – local habitat conditions, leaf biochemistry and seasonal variations drive fungal community dynamics, Ernst-Moritz-Arndt Universität Greifswald, Germany
Abu Bakar Siddique, Research Master's Degree, 2013, (sup) Dr. Benedicte R. Arbrectsen, The role of endophytic fungi in aspen leaves in the presence and absence of beetle damage, Umeå University
Abu Bakar Siddique, Research Master's Degree, 2010, (sup) Dr. Abu Bakar, Efficacy of Trichoderma and some botanicals in controlling leaf blight of mustard and disease variability of pathogen, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
 
 
Honours & awards
2017, Abu Bakar Siddique, STSM (short scientific mission) in the COST Action FA1405
 
 
Fields of research
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B270 Plant ecology ; SPECIFICATION: Molecular Mycology, Botany, Mycobiome biodiversity, Plant-microbes-insects interaction
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B270 Plant ecology ; SPECIFICATION: Agricultural Science, forest ecology and environment, forest ecology theory and application, evolutionary biology, dualex measurement (chlorophyll, flavonoid and nitrogen content of leaf), disease management by biological control agent
 
 
Additional information
Ph.D. in Ernst-Moritz-Arndt Universität, Greifswald, Germany (2017)

Publications

Category
Year
Publication
 
1.1.
2018
Unterseher, M.; Karunarathna, S.C.;Cruz, G.R...Siddique, A.B.... et al. (2018). Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and composition. Mycological Progress, 17 (4), 489−500. DOI: 10.1007/s11557-018-1375-8.
1.1.
2017
Siddique, A.B.; Khokon, A.M.; Unterseher, M. (2017). What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys, 1−1.10.3897/mycokeys.20.11265.
2.3.
2017
Siddique, A.B. (2017). Leaf-inhabiting mycobiomes under different environmental conditions – local habitat conditions, leaf biochemistry and seasonal variations drive fungal community dynamics. (Doktoritöö, Ernst-Moritz-Arndt Universität Greifswald, Germany). Greifswald, Germany: University of Greifswald.
1.1.
2016
Unterseher, M; Siddique, A.B.; Brachmann, A.; Peršoh, D. (2016). Diversity and composition of the leaf mycobiome of beech (Fagus sylvatica) are affected by local habitat conditions and leaf biochemistry. PLoS ONE. DOI: 10.1371/journal.pone.0152878.
1.1.
2016
Siddique A.B.; Unterseher M. (2016). A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition. Fungal Ecology, 20, 175−185.10.1016/j.funeco.2015.12.009.
6.7.
2013
Siddique, A.B. (2013). The role of endophytic fungi in aspen leaves in the presence and absence of beetle damage. (Magistritöö, Umeå University). Umeå, Sweden: Umeå University.
13.04.2022

Otsi publikatsiooni

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PublikatsioonAutoridAastaVäljaande pealkiriKlassifikaatorFailAsutused
Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and compositionUnterseher, M.; Karunarathna, S.C.;Cruz, G.R...Siddique, A.B.... et al. 2018Mycological Progress1.1.
What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions.Siddique, A.B.; Khokon, A.M.; Unterseher, M.2017MycoKeys1.1.
Leaf-inhabiting mycobiomes under different environmental conditions – local habitat conditions, leaf biochemistry and seasonal variations drive fungal community dynamicsSiddique, A.B.20172.3.
A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community compositionSiddique A.B.; Unterseher M. 2016Fungal Ecology1.1.
Diversity and composition of the leaf mycobiome of beech (Fagus sylvatica) are affected by local habitat conditions and leaf biochemistryUnterseher, M; Siddique, A.B.; Brachmann, A.; Peršoh, D.2016PLoS ONE1.1.
The role of endophytic fungi in aspen leaves in the presence and absence of beetle damageSiddique, A.B.20136.7.