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Age Brauer

https://www.etis.ee/CV/Age_Brauer/est
20.04.1982
737 4047
age.brauer@ut.ee
Neiupõlvenimi: Tats

Teenistuskäik

Töökohad ja ametid
01.01.2021–30.06.2022   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, molekulaar- ja rakubioloogia instituut, genoomika kaasprofessor (1,00)
01.02.2012–...   
Tartu Ülikool, bioinformaatika teadur (tööleping peatatud) (1,00)
01.01.2020–31.12.2020   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, molekulaar- ja rakubioloogia instituut, genoomika vanemteadur (1,00)
01.02.2012–31.12.2015   
Eesti Biokeskus, Erakorraline teadur (0,10)
01.04.2009–31.01.2012   
Tartu Ülikool, Teadur (0,50)
01.09.2008–31.01.2012   
Eesti Biokeskus, Erakorraline teadur (0,50)
01.05.2008–31.03.2009   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut, erakorraline teadur (0,10)
01.07.2007–30.06.2008   
Eesti Biokeskus, Erakorraline teadur (0,50)
01.10.2006–31.08.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Molekulaar- ja rakubioloogia instituut, programmeerija (0,50)
 
 
Haridustee
2006–2009   
Tartu Ülikool, Bioloogia- geograafiateaduskond, PhD (bioinformaatika)
2004–2006   
Tartu Ülikool, Bioloogia- geograafiateaduskond, M.Sc (bioinformaatika)
2000–2004   
Tartu Ülikool, Bioloogia- geograafiateaduskond, B. Sc (geenitehnoloogia (bioinformaatika))
1988–2000   
Viljandi Paalalinna Gümnaasium

Kvalifikatsioon

Teaduskraadid
Age Brauer, doktorikraad, 2009, (juh) Maido Remm; Tanel Tenson, Sequence motifs influencing the efficiency of translation (Translatsiooni effektiivsust mõjutavad järjestuse motiivid), Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut.
Age Brauer, magistrikraad, 2006, (juh) Maido Remm; Tanel Tenson, Nukleotiidide, koodonite ja aminohapete sagedused kõrge ekspressioonitasemega geenides, Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut, Bioinformaatika õppetool.
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 3. Terviseuuringud; 3.11. Terviseuuringutega seotud uuringud, näiteks biokeemia, geneetika, mikrobioloogia, biotehnoloogia, molekulaarbioloogia, rakubioloogia, biofüüsika ja bioinformaatika; CERCS KLASSIFIKAATOR: B110 Bioinformaatika, meditsiiniinformaatika, biomatemaatika, biomeetrika ; TÄPSUSTUS: Bioinformaatika
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.12. Bio- ja keskkonnateadustega seotud uuringud, näiteks biotehnoloogia, molekulaarbioloogia, rakubioloogia, biofüüsika, majandus- ja tehnoloogiauuringud; TÄPSUSTUS: bioinformaatika

Jooksvad projektid

Lõppenud projektid

Juhendamisel väitekirjad

Juhendatud väitekirjad

Publikatsioonid

1.1. Teadusartiklid, mis on kajastatud Web of Science andmebaasides Science Citation Index Expanded, Social Sciences Citation Index, Arts & Humanities Citation Index, Emerging Sources Citation Index ja/või andmebaasis Scopus (v.a. kogumikud)
 
Erki Aun, Veljo Kisand, Mailis Laht, Kaidi Telling, Piret Kalmus, Ülo Väli, Age Brauer, Maido Remm and Tanel Tenson (2021). Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs. Frontiers in Microbiology, 12, 1−13. DOI: 10.3389/fmicb.2021.601490.
 
Rosendahl, Sirli; Tamman, Hedvig; Brauer, Age; Remm, Maido; Hõrak, Rita (2020). Chromosomal toxin-antitoxin systems in Pseudomonas putida are rather selfish than beneficial. Scientific Reports, 10 (1), 9230. DOI: 10.1038/s41598-020-65504-0.
 
Telling, Kaidi; Brauer, Age; Laht, Mailis; Kalmus, Piret; Toompere, Karolin; Kisand, Veljo; Maimets, Matti; Remm, Maido; Tenson, Tanel; Lutsar, Irja (2020). Characteristics of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae and Contact to Animals in Estonia. Microorganisms, 8 (8), ARTN 1130. DOI: 10.3390/microorganisms8081130.
 
Jõers, Arvi; Vind, Kristiina; Hernández, Sara B; Maruste, Regina; Pereira, Marta D; Brauer, Age; Remm, Maido; Cava, Felipe; Tenson, Tanel (2019). Muropeptides Stimulate Growth Resumption from Stationary Phase in Escherichia coli. Scientific Reports, 9, 18043. DOI: 10.1038/s41598-019-54646-5.
 
Sepp, Epp; Andreson, Reidar; Balode, Arta; Bilozor, Anastasia; Brauer, Age; Egorova, Svetlana; Huik, Kristi; Ivanova, Marina; Kaftyreva, Lidia; Kõljalg, Siiri; Koressaar, Triinu; Makarova, Maria; Miciuleviciene, Jolanta; Pai, Kristiine; Remm, Maido; Rööp, Tiiu; Naaber, Paul (2019). Phenotypic and Molecular Epidemiology of ESBL-, AmpC-, and Carbapenemase-Producing Escherichia coli in Northern and Eastern Europe. Frontiers in Microbiology, 10, ARTN 2465. DOI: 10.3389/fmicb.2019.02465.
 
Aun, Erki; Brauer, Age; Kisand, Veljo; Tenson, Tanel; Remm, Maido (2018). A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria. PLoS Computational Biology, 14 (10), ARTN e1006434. DOI: 10.1371/journal.pcbi.1006434.
 
Telling, Kaidi; Laht, Mailis; Brauer, Age; Remm, Maido; Kisand, Veljo; Maimets, Matti; Tenson, Tanel; Lutsar, Irja (2018). Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals. BMC Infectious Diseases, 18 (1), ARTN 513. DOI: 10.1186/s12879-018-3421-1.
 
Brauer, Age; Telling, Kaidi; Laht, Mailis; Kalmus, Piret; Lutsar, Irja; Remm, Maido; Kisand, Veljo; Tenson, Tanel (2016). Plasmid with colistin resistance gene mcr-1 in ESBL-producing Escherichia coli strains isolated from pig slurry in Estonia. Antimicrobial Agents and Chemotherapy, 60 (11), 6933−36. DOI: 10.1128/AAC.00443-16.
 
Sothiselvam, S; Liu, B; Han, W; Ramu, H; Klepacki, D; Atkinson, GC; Brauer, A; Remm, M; Tenson, T; Schulten, K; Vázquez-Laslop, N; Mankin, AS. (2014). Macrolide antibiotics allosterically predispose the ribosome for translation arrest. Proceedings of the National Academy of Sciences, 111 (27), 9804−9809. DOI: 10.1073/pnas.1403586111.
 
Brauer, A.; Kurz, A.; Stockwell, T.; Baden-Tillson, H.; Heidler, J.; Wittig, I.; Kauferstein, S.; Mebs, D.; Stöcklin, R.; Remm, M. (2012). The Mitochondrial Genome of the Venomous Cone Snail Conus consors. PLoS ONE, 7 (12), e51528 .
 
Koua, D.; Brauer, A.; Laht, S.; Kaplinksi, L.; Favreau, P.; Remm, M.; Lisacek, F.; Stöcklin, R. (2012). ConoDictor: a tool for prediction of conopeptide superfamilies. Nucleic Acids Research, 40, W238−W241. DOI: 10.1093/nar/gks337.
 
Siibak, Triinu; Peil, Lauri; Doenhoefer, Alexandra; Tats, Age; Remm, Maido; Wilson, Daniel N.; Tenson, Tanel; Remme, Jaanus (2011). Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins. Molecular Microbiology, 80 (1), 54−67. DOI: 10.1111/j.1365-2958.2011.07555.x.
 
Tats, A.; Tenson, T.; Remm, M. (2008). Preferred and avoided codon pairs in three domains of life. BMC Genomics, 9, 463.
 
Tats, A.; Remm, M.; Tenson, T. (2006). Highly expressed proteins have an increased frequency of alanine in the second amino acid position. BMC Genomics, 7, 28.
2.3. Dissertatsioonide seerias ilmunud dissertatsioonid (v.a. käsikirjalised);
 
Tats, A. (2009). Sequence motifs influencing the efficiency of translation. (Doktoritöö). Tartu Ülikooli Kirjastus.
3.2. Artiklid/peatükid lisas mitte loetletud kirjastuste välja antud kogumikes
 
Bonturi, Nemailla; Pinheiro, Marina Julio; Monteiro de Oliveira, Paola; Rusadze, Eka; Eichinger, Tobias; Liudziute, Gintare; Sabedotti De Biaggi, Juliano; Brauer, Age; Remm, Maido; Miranda, Everson Alves; Ledesma-Amaro, Rodrigo; Lahtvee, Petri-Jaan (2022). Development of a dedicated Golden Gate Assembly platform (RtGGA) for Rhodotorula toruloides. bioRxiv. DOI: 10.1101/2022.03.02.482697.
27.04.2022

Age Brauer

https://www.etis.ee/CV/Age_Brauer/eng
20.04.1982
737 4047
age.brauer@ut.ee
Maiden name: Tats

Career

Institutions and positions
01.01.2021–30.06.2022   
University of Tartu, Faculty of Science and Technology, Institute of Molecular and Cell Biology, Associate Professor in Genomics (1,00)
01.02.2012–...   
University of Tartu, Researcher (suspended) (1,00)
01.01.2020–31.12.2020   
University of Tartu, Faculty of Science and Technology, Institute of Molecular and Cell Biology, Senior Research Fellow in Genomics (1,00)
01.02.2012–31.12.2015   
Estonian Biocentre, Extraordinary Researcher (0,10)
01.04.2009–31.01.2012   
University of Tartu, Researcher (0,50)
01.09.2008–31.01.2012   
Estonian Biocentre, Extraordinary Researcher (0,50)
01.05.2008–31.03.2009   
University of Tartu, Faculty of Science and Technology (old), Institute of Molecular and Cell Biology, University of Tartu, Research Fellow extraordinarius (0,10)
01.07.2007–30.06.2008   
Estonian Biocentre, Extraordinary Researcher (0,50)
01.10.2006–31.08.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Molecular and Cell Biology, Programmer (0,50)
 
 
Education
2006–2009   
University of Tartu, Faculty of Biology and Geography, PhD (bioinformatics)
2004–2006   
University of Tartu, Faculty of Biology and Geography, M.Sc (bioinformatics)
2000–2004   
University of Tartu, Faculty of Biology and Geography, B.Sc (gene technology(bioinformatics))
1988–2000   
Viljandi Paalalinna Gymnasium

Qualifications

Academic degrees
Age Brauer, Doctor's Degree, 2009, (sup) Maido Remm; Tanel Tenson, Sequence motifs influencing the efficiency of translation, University of Tartu, Faculty of Science and Technology (old), Institute of Molecular and Cell Biology, University of Tartu.
Age Brauer, Master's Degree, 2006, (sup) Maido Remm; Tanel Tenson, Nukleotiidide, koodonite ja aminohapete sagedused kõrge ekspressioonitasemega geenides (The frequencies of nucleotides, codons and amino acids in highly expressed genes), University of Tartu, Faculty of Science and Technology (old), Institute of Molecular and Cell Biology, University of Tartu, Chair of Bioinformatics.
 
 
Fields of research
ETIS CLASSIFICATION: 3. Health; 3.11. Biochemistry, Genetics, Microbiology, Biotechnology, Molecular Biology, Cell Biology, Biophysics and Bioinformatics relating to Health Studies; CERCS CLASSIFICATION: B110 Bioinformatics, medical informatics, biomathematics, biometrics ; SPECIFICATION: Bioinformatics
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.12. Biotechnology, Molecular Biology, Cell Biology, Biophysics and Economic and Technological Research relating to Bio- and Environmental Sciences
 
 

Projects in progress

Completed projects

Dissertations under supervision

Supervised dissertations

Publications

1.1. Teadusartiklid, mis on kajastatud Web of Science andmebaasides Science Citation Index Expanded, Social Sciences Citation Index, Arts & Humanities Citation Index, Emerging Sources Citation Index ja/või andmebaasis Scopus (v.a. kogumikud)
 
Erki Aun, Veljo Kisand, Mailis Laht, Kaidi Telling, Piret Kalmus, Ülo Väli, Age Brauer, Maido Remm and Tanel Tenson (2021). Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs. Frontiers in Microbiology, 12, 1−13. DOI: 10.3389/fmicb.2021.601490.
 
Rosendahl, Sirli; Tamman, Hedvig; Brauer, Age; Remm, Maido; Hõrak, Rita (2020). Chromosomal toxin-antitoxin systems in Pseudomonas putida are rather selfish than beneficial. Scientific Reports, 10 (1), 9230. DOI: 10.1038/s41598-020-65504-0.
 
Telling, Kaidi; Brauer, Age; Laht, Mailis; Kalmus, Piret; Toompere, Karolin; Kisand, Veljo; Maimets, Matti; Remm, Maido; Tenson, Tanel; Lutsar, Irja (2020). Characteristics of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae and Contact to Animals in Estonia. Microorganisms, 8 (8), ARTN 1130. DOI: 10.3390/microorganisms8081130.
 
Jõers, Arvi; Vind, Kristiina; Hernández, Sara B; Maruste, Regina; Pereira, Marta D; Brauer, Age; Remm, Maido; Cava, Felipe; Tenson, Tanel (2019). Muropeptides Stimulate Growth Resumption from Stationary Phase in Escherichia coli. Scientific Reports, 9, 18043. DOI: 10.1038/s41598-019-54646-5.
 
Sepp, Epp; Andreson, Reidar; Balode, Arta; Bilozor, Anastasia; Brauer, Age; Egorova, Svetlana; Huik, Kristi; Ivanova, Marina; Kaftyreva, Lidia; Kõljalg, Siiri; Koressaar, Triinu; Makarova, Maria; Miciuleviciene, Jolanta; Pai, Kristiine; Remm, Maido; Rööp, Tiiu; Naaber, Paul (2019). Phenotypic and Molecular Epidemiology of ESBL-, AmpC-, and Carbapenemase-Producing Escherichia coli in Northern and Eastern Europe. Frontiers in Microbiology, 10, ARTN 2465. DOI: 10.3389/fmicb.2019.02465.
 
Aun, Erki; Brauer, Age; Kisand, Veljo; Tenson, Tanel; Remm, Maido (2018). A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria. PLoS Computational Biology, 14 (10), ARTN e1006434. DOI: 10.1371/journal.pcbi.1006434.
 
Telling, Kaidi; Laht, Mailis; Brauer, Age; Remm, Maido; Kisand, Veljo; Maimets, Matti; Tenson, Tanel; Lutsar, Irja (2018). Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals. BMC Infectious Diseases, 18 (1), ARTN 513. DOI: 10.1186/s12879-018-3421-1.
 
Brauer, Age; Telling, Kaidi; Laht, Mailis; Kalmus, Piret; Lutsar, Irja; Remm, Maido; Kisand, Veljo; Tenson, Tanel (2016). Plasmid with colistin resistance gene mcr-1 in ESBL-producing Escherichia coli strains isolated from pig slurry in Estonia. Antimicrobial Agents and Chemotherapy, 60 (11), 6933−36. DOI: 10.1128/AAC.00443-16.
 
Sothiselvam, S; Liu, B; Han, W; Ramu, H; Klepacki, D; Atkinson, GC; Brauer, A; Remm, M; Tenson, T; Schulten, K; Vázquez-Laslop, N; Mankin, AS. (2014). Macrolide antibiotics allosterically predispose the ribosome for translation arrest. Proceedings of the National Academy of Sciences, 111 (27), 9804−9809. DOI: 10.1073/pnas.1403586111.
 
Brauer, A.; Kurz, A.; Stockwell, T.; Baden-Tillson, H.; Heidler, J.; Wittig, I.; Kauferstein, S.; Mebs, D.; Stöcklin, R.; Remm, M. (2012). The Mitochondrial Genome of the Venomous Cone Snail Conus consors. PLoS ONE, 7 (12), e51528 .
 
Koua, D.; Brauer, A.; Laht, S.; Kaplinksi, L.; Favreau, P.; Remm, M.; Lisacek, F.; Stöcklin, R. (2012). ConoDictor: a tool for prediction of conopeptide superfamilies. Nucleic Acids Research, 40, W238−W241. DOI: 10.1093/nar/gks337.
 
Siibak, Triinu; Peil, Lauri; Doenhoefer, Alexandra; Tats, Age; Remm, Maido; Wilson, Daniel N.; Tenson, Tanel; Remme, Jaanus (2011). Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins. Molecular Microbiology, 80 (1), 54−67. DOI: 10.1111/j.1365-2958.2011.07555.x.
 
Tats, A.; Tenson, T.; Remm, M. (2008). Preferred and avoided codon pairs in three domains of life. BMC Genomics, 9, 463.
 
Tats, A.; Remm, M.; Tenson, T. (2006). Highly expressed proteins have an increased frequency of alanine in the second amino acid position. BMC Genomics, 7, 28.
2.3. Dissertatsioonide seerias ilmunud dissertatsioonid (v.a. käsikirjalised);
 
Tats, A. (2009). Sequence motifs influencing the efficiency of translation. (Doktoritöö). Tartu Ülikooli Kirjastus.
3.2. Artiklid/peatükid lisas mitte loetletud kirjastuste välja antud kogumikes
 
Bonturi, Nemailla; Pinheiro, Marina Julio; Monteiro de Oliveira, Paola; Rusadze, Eka; Eichinger, Tobias; Liudziute, Gintare; Sabedotti De Biaggi, Juliano; Brauer, Age; Remm, Maido; Miranda, Everson Alves; Ledesma-Amaro, Rodrigo; Lahtvee, Petri-Jaan (2022). Development of a dedicated Golden Gate Assembly platform (RtGGA) for Rhodotorula toruloides. bioRxiv. DOI: 10.1101/2022.03.02.482697.
27.04.2022