Hedi Peterson
https://www.etis.ee/CV/Hedi_Peterson/est
www.twitter.com/hedipeterson
hedi.peterson@ut.ee
Teenistuskäik
Töökohad ja ametid
01.01.2022–...
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, arvutiteaduse instituut, bioinformaatika professor (1,00)
01.01.2021–31.12.2021
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, arvutiteaduse instituut, bioinformaatika kaasprofessor (1,00)
01.01.2017–31.12.2020
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, arvutiteaduse instituut, bioinformaatika vanemteadur (1,00)
02.03.2016–31.12.2016
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, arvutiteaduse instituut, bioinformaatika teadur (0,80)
01.01.2016–01.03.2016
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, arvutiteaduse instituut, bioinformaatika teadur (0,80)
01.11.2015–31.12.2015
Tartu Ülikool, Matemaatika-informaatikateaduskond, Arvutiteaduse instituut, bioinformaatika teadur (0,80)
01.09.2015–31.10.2015
Tartu Ülikool, Matemaatika-informaatikateaduskond, Arvutiteaduse instituut, bioinformaatika teadur (1,00)
01.01.2014–31.08.2015
Tartu Ülikool, Matemaatika-informaatikateaduskond, Arvutiteaduse instituut, bioinformaatika teadur (1,00)
01.01.2014–30.04.2020
Quretec OÜ, Quretec, juhtivteadur (0,30)
01.07.2011–30.11.2013
Genfi Ülikool, Genfi Ülikool, järeldoktor (1,00)
2007–2011
OÜ Quretec, Teadur (1,00)
2006–2006
Eesti Biokeskus, Erakorraline teadur (0,10)
01.01.2006–31.12.2007
Egeen, teadur
2005–2005
Eesti Biokeskus, programmeerija (0,10)
Haridustee
2006–2015
Tartu Ülikool, bioinformaatika PhD
2005–2006
Uppsala Ülikool, bioinformaatika M.Sc, vahetusüliõpilane
2004–2006
Tartu Ülikool, bioinformaatika M.Sc
2000–2004
Tartu Ülikool, bioinformaatika B.Sc
Teadusorganisatsiooniline ja -administratiivne tegevus
2021−...
LUMI EuroHPC pre-exascale superarvuti teadusnõukoja liige (Eesti esindaja)
2021−...
ETAG-i Euroopa Liidu partnerluse töörühma „Digilahendused igas eluvaldkonnas“ liige
2020−...
EMBL-EBI "Bioinformatics Summer School" kaas-korraldaja
2020−...
ELIXIR Belgia teadusnõukogu liige
2018−...
ELIXIRi Recommended Interoperable Resources taotluste ja Node Services hindaja
2016−...
Euroopa Komisjon, Horizon 2020 ja Horizon Europe teaduse- ja innovatsiooni programmi granditaotluste ekspert
2005−...
SOCBIN
2020−2021
NeIC PARI Reference Group liige
2018−2020
Tryggve Reference Group liige
Lisainfo
Available in English
Kvalifikatsioon
Teaduskraadid
Teaduspreemiad ja tunnustused
2021, Hedi Peterson, Tartu Ülikooli aumärk
2017, Hedi Peterson, Researcher of the year 2017, Institute of Computer Science, University of Tartu
2010, Hedi Peterson,
Haridus- ja Teadusminsiteeriumi tänukiri: Kaur Alasoo konkursitöö „Tugivektormasinate kombineerimine angiogeneesiga seotud geenide ennustamiseks” juhendamise eest loodusteaduste ja tehnika valdkonnas (I preemia)
2006, Hedi Peterson, Gertrud Thelins stipendium Tartu Ülikooli tudengitele õpinguteks Uppsala Ülikoolis, 2006/2007 õppeaasta kevadsemester
2005, Hedi Peterson, Human Research Potential & the Socio-economic Knowledge Base: Access to Research Infrastructures (ARI), 09.03-10.04.2005 Uppsala
2005, Hedi Peterson, Kristjan-Jaagu tasemeõppe stipendium, 2005/06 õppeaasta Uppsala Ülikoolis
2004, Hedi Peterson, Eesti olümpiakomitee kõrghariduse stipendium tippsportlastele, 2004/2005-2005/2006
Teadustöö põhisuunad
ETIS VALDKOND: 4. Loodusteadused ja tehnika; 4.6. Arvutiteadused; CERCS VALDKOND: P170 Arvutiteadus, arvutusmeetodid, süsteemid, juhtimine (automaatjuhtimisteooria)
ETIS VALDKOND: 1. Bio- ja keskkonnateadused; 1.12. Bio- ja keskkonnateadustega seotud uuringud, näiteks biotehnoloogia, molekulaarbioloogia, rakubioloogia, biofüüsika, majandus- ja tehnoloogiauuringud; TÄPSUSTUS: süsteemibioloogia
geeniregulatsiooni bioinformaatika, süsteemibioloogia; geeniregulatsiooni bioinformaatika
ETIS VALDKOND: 3. Terviseuuringud; 3.11. Terviseuuringutega seotud uuringud, näiteks biokeemia, geneetika, mikrobioloogia, biotehnoloogia, molekulaarbioloogia, rakubioloogia, biofüüsika ja bioinformaatika; CERCS VALDKOND: B110 Bioinformaatika, meditsiiniinformaatika, biomatemaatika, biomeetrika
Klass
Aasta
Publikatsioon
1.1.
2021
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2019
1.1.
2019
1.1.
2019
1.1.
2019
6.7.
2019
1.1.
2018
1.1.
2017
1.1.
2017
1.1.
2017
1.1.
2017
1.1.
2017
1.1.
2016
1.1.
2016
1.1.
2016
1.1.
2016
1.1.
2016
1.1.
2015
1.1.
2015
1.1.
2013
1.1.
2013
1.1.
2013
3.5.
2013
3.5.
2012
1.1.
2011
3.5.
2011
3.5.
2011
1.1.
2010
1.1.
2010
1.1.
2010
5.1.
2010
5.1.
2010
1.1.
2009
1.1.
2009
3.1.
2009
1.1.
2008
1.1.
2008
1.1.
2007
3.5.
2007
10.06.2022
Hedi Peterson
https://www.etis.ee/CV/Hedi_Peterson/eng
www.twitter.com/hedipeterson
hedi.peterson@ut.ee
Career
Institutions and positions
01.01.2022–...
University of Tartu, Faculty of Science and Technology, Institute of Computer Science, Professor of Bioinformatics (1,00)
01.01.2021–31.12.2021
University of Tartu, Faculty of Science and Technology, Institute of Computer Science, Associate Professor of Bioinformatics (1,00)
01.01.2017–31.12.2020
University of Tartu, Faculty of Science and Technology, Institute of Computer Science, Senior Researcher (1,00)
02.03.2016–31.12.2016
University of Tartu, Faculty of Science and Technology, Institute of Computer Science, Research Fellow of Bioinformatics (0,80)
01.01.2016–01.03.2016
University of Tartu, Faculty of Science and Technology, Institute of Computer Science, Research Fellow of Bioinformatics (0,80)
01.11.2015–31.12.2015
University of Tartu, Faculty of Mathematics and Computer Science, Institute of Computer Science, Research Fellow of Bioinformatics (0,80)
01.09.2015–31.10.2015
University of Tartu, Faculty of Mathematics and Computer Science, Institute of Computer Science, Research Fellow of Bioinformatics (1,00)
01.01.2014–31.08.2015
University of Tartu, Faculty of Mathematics and Computer Science, Institute of Computer Science, Research Fellow of Bioinformatics (1,00)
01.01.2014–30.04.2020
Quretec OÜ, Quretec, Lead researcher (0,30)
01.07.2011–30.11.2013
Genfi Ülikool, University of Geneva, Postdoctoral researcher (1,00)
2007–2011
Quretec Ltd, Researcher (1,00)
2006–2006
Estonian Biocentre, Extraordinary Researcher (0,10)
01.01.2006–31.12.2007
Egeen, scientist
2005–2005
Estonian Biocentre, Other staff (0,10)
Education
2006–2015
University of Tartu, PhD bioinformatics
2005–2006
University of Uppsala, M.Sc bioinformatics
2004–2006
University of Tartu, M.Sc bioinformatics
2000–2004
University of Tartu, B.Sc bioinformatics
R&D related managerial and administrative work
2021−...
LUMI EuroHPC pre-exascale super computer Scientific Advisory Board member (Estonian representative)
2021−...
Estonian Research Council European Union partnership workgroup "Digital solutions for every walk of life" member
2020−...
Co-organiser of "Bioinformatics Summer School" at EMBL-EBI
2020−...
Member of ELIXIR Belgium Scientific Advisory Board
2018−...
Evaluator for ELIXIR Recommended Interoperable Resources and Node Services
2016−...
European Commission, Horizon 2020 and Horizon Europe research and innovation program; expert-evaluator
2005−...
SOCBIN
2020−2021
Member of NeIC PARI Reference Group
2018−2020
Member of Tryggve Reference Group
Additional information
Teaching activities:
1. Lecturing bioinformatics in “Bioinformatics for bioengineering" course, University of Tartu, 2017/2018, 2018/2019, 2019/2020
2. ELIXIR-Estonia course “Web-based tools to analyse and interpret high-throughput biological data”,
Institute Pasteur, France 18.10.2016
3. ELIXIR-Estonia course “Web-based tools to analyse and interpret high-throughput biological data”,
University of Oxford, UK, 12.01.2016
4. ELIXIR Linux Command Line course, Tartu, 15.05.2015
5. ELIXIR g:Profiler course, Tartu, 05.12.2014
6. Lectures of Bioinformatics course, Tartu, autumnt 2010
7. BIIT service workshop City of Hope, USA, 23.11.2010
8. EMBO Practical course for microarray analysis, Hinxton, UK 20.10.2010
9. EMBO Practical course for microarray analysis, Hinxton, UK 15.10.2009
10. 9th BioSapiens European Bioinformatics School, Brussels, Belgium 30.01.2009
11. EBI Roadshow 2009, Tartu 07.-10.09.2009 (main local organiser)
12. ENFIN-EMBRACE workshop, Helsinki, Finland 06.10.2009
Undergraduate supervising activities:
1. Joanna Niklus, bachelor thesis "Modern bioinformatics methods in Alzheimer's disease research” (2017)
2. Andreas Ellervee, bachelor thesis “Automatic detection of intermediate genes responsible for signal mediation from high-throughput data” (2015)
3. Henry Mägi, bachelor thesis “RNA-seq pipeline” (2014)
4. Kaur Alasoo, bachelor thesis „Combining Support Vector Machines to Predict Novel Angiogenesis Genes“ (2010) (The thesis got the First prizes from the Estonian Ministry of Education and Science from the Estonian Academy of Sciences in 2010)
5. Priidik Vaikla, bachelor thesis „Project management system by the example of BIIT scientific group“ (2008)
6. Sten Ilmjärv, bachelor thesis„Describing transcription start sites in Saccharomyces cerevisiae“ (2007)
7. Marten Teino, bachelor thesis „Scientific literature database for a research group“ (2007)
1. Lecturing bioinformatics in “Bioinformatics for bioengineering" course, University of Tartu, 2017/2018, 2018/2019, 2019/2020
2. ELIXIR-Estonia course “Web-based tools to analyse and interpret high-throughput biological data”,
Institute Pasteur, France 18.10.2016
3. ELIXIR-Estonia course “Web-based tools to analyse and interpret high-throughput biological data”,
University of Oxford, UK, 12.01.2016
4. ELIXIR Linux Command Line course, Tartu, 15.05.2015
5. ELIXIR g:Profiler course, Tartu, 05.12.2014
6. Lectures of Bioinformatics course, Tartu, autumnt 2010
7. BIIT service workshop City of Hope, USA, 23.11.2010
8. EMBO Practical course for microarray analysis, Hinxton, UK 20.10.2010
9. EMBO Practical course for microarray analysis, Hinxton, UK 15.10.2009
10. 9th BioSapiens European Bioinformatics School, Brussels, Belgium 30.01.2009
11. EBI Roadshow 2009, Tartu 07.-10.09.2009 (main local organiser)
12. ENFIN-EMBRACE workshop, Helsinki, Finland 06.10.2009
Undergraduate supervising activities:
1. Joanna Niklus, bachelor thesis "Modern bioinformatics methods in Alzheimer's disease research” (2017)
2. Andreas Ellervee, bachelor thesis “Automatic detection of intermediate genes responsible for signal mediation from high-throughput data” (2015)
3. Henry Mägi, bachelor thesis “RNA-seq pipeline” (2014)
4. Kaur Alasoo, bachelor thesis „Combining Support Vector Machines to Predict Novel Angiogenesis Genes“ (2010) (The thesis got the First prizes from the Estonian Ministry of Education and Science from the Estonian Academy of Sciences in 2010)
5. Priidik Vaikla, bachelor thesis „Project management system by the example of BIIT scientific group“ (2008)
6. Sten Ilmjärv, bachelor thesis„Describing transcription start sites in Saccharomyces cerevisiae“ (2007)
7. Marten Teino, bachelor thesis „Scientific literature database for a research group“ (2007)
Qualifications
Academic degrees
Honours & awards
2021, Hedi Peterson, University of Tartu Badge of Distinction
2017, Hedi Peterson, Researcher of the year 2017, Institute of Computer Science, University of Tartu
2010, Hedi Peterson, Minister of Science and Education: letter of thanks for successful supervision of Kaur Alasoo's bachelor thesis " Combining Support Vector Machines to Predict Novel Angiogenesis Genes" in Natural Sciences and Engineering (1st prize)
2006, Hedi Peterson, Gertrud Thelin's scholarship for University of Tartu students for studing at University of Uppsala, spring semester 2006/2007
2005, Hedi Peterson, Human Research Potential & the Socio-economic Knowledge Base: Access to Research Infrastructures (ARI), 09.03-10.04.2005 Uppsala
2005, Hedi Peterson, Kristjan-Jaak fellowship for studying at the University of Uppsala, 2005/06 academic year
2004, Hedi Peterson, Estonian Olympic Committee scholarship for Higher Education studies for National Level athletes, 2004/2005-2005/2006
Fields of research
ETIS RESEARCH FIELD: 4. Natural Sciences and Engineering; 4.6. Computer Sciences; CERCS RESEARCH FIELD: P170 Computer science, numerical analysis, systems, control
ETIS RESEARCH FIELD: 1. Biosciences and Environment; 1.12. Biotechnology, Molecular Biology, Cell Biology, Biophysics and Economic and Technological Research relating to Bio- and Environmental Sciences; SPECIFICATION: systems biology, bioinformatics of gene regulation
ETIS RESEARCH FIELD: 3. Health; 3.11. Biochemistry, Genetics, Microbiology, Biotechnology, Molecular Biology, Cell Biology, Biophysics and Bioinformatics relating to Health Studies; CERCS RESEARCH FIELD: B110 Bioinformatics, medical informatics, biomathematics, biometrics
Category
Year
Publication
1.1.
2021
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2020
1.1.
2019
1.1.
2019
1.1.
2019
1.1.
2019
6.7.
2019
1.1.
2018
1.1.
2017
1.1.
2017
1.1.
2017
1.1.
2017
1.1.
2017
1.1.
2016
1.1.
2016
1.1.
2016
1.1.
2016
1.1.
2016
1.1.
2015
1.1.
2015
1.1.
2013
1.1.
2013
1.1.
2013
3.5.
2013
3.5.
2012
1.1.
2011
3.5.
2011
3.5.
2011
1.1.
2010
1.1.
2010
1.1.
2010
5.1.
2010
5.1.
2010
1.1.
2009
1.1.
2009
3.1.
2009
1.1.
2008
1.1.
2008
1.1.
2007
3.5.
2007
10.06.2022