See veebileht kasutab küpsiseid kasutaja sessiooni andmete hoidmiseks. Veebilehe kasutamisega nõustute ETISe kasutustingimustega. Loe rohkem
Olen nõus

Pearu Peterson

https://www.etis.ee/CV/Pearu_Peterson/est
56641128
pearu.peterson@gmail.com

Teenistuskäik

Töökohad ja ametid
01.11.2018–...   
Cozer OÜ, ettevõtja (1,00)
01.06.2016–...   
Glasstress OÜ, teadusuurija (0,10)
01.01.2017–31.10.2018   
Tallinna Tehnikaülikool, Loodusteaduskond, Küberneetika instituut, Tahkisemehaanika labori vanemteadur (1,00)
01.01.2016–31.12.2016   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, Fotoelastsuse laboratoorium, Vanemteadur (1,00)
01.10.2014–31.12.2016   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, asedirektor (1,00)
01.09.2008–31.12.2015   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, Süsteemibioloogia laboratoorium, Vanemteadur (1,00)
01.05.2007–30.04.2008   
Simula Research Laboratory, Oslo, Norra, teadusuurija (1,00)
2003–31.08.2008   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, Mittelineaarse dünaamika laboratoorium, Vanemteadur (1,00)
01.01.2003–31.12.2006   
Enthought Inc., USA, tarkvara arendaja/konsultant
01.01.2001–31.12.2002   
Twente Ülikool, Holland, järeldoktor
1997–2003   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, Teadur (1,00)
01.01.1996–31.12.1997   
Twente Ülikool, Holland, uurija
1995–1995   
Tallinna Ülikool, Matemaatika ja Loodusteaduste Instituut, Informaatika osakond, Informaatika õppetool, Assistent (1,00)
01.01.1994–31.12.1994   
VTT Mereuuringute keskus, Soome, uurija
1992–1997   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, Insener (1,00)
 
 
Haridustee
1997–2001   
Tallinna Tehnikaülikool, tehniline füüsika, loodusteaduste doktor (Ph.D.), 2001
1995–1995   
Jyväskyla Ülikool, Soome, matemaatika ja loodusteaduste teaduskond, 5-s rahvusvaheline suvekool, lainekeste (wavelets) teooria
1991–1997   
Tallinna Tehnikaülikool, tehniline füüsika, loodusteaduste magister (M.Sc.), 1997
 
 
Teadusorganisatsiooniline ja -administratiivne tegevus
2017−2018   
Tallinna Tehnikaülikool, Loodusteaduskond, Küberneetika instituudi nõukogu liige
2014−2106   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, asedirektor
 
 
Loometöö
2014-2015 CENSi mikroskoopia süsteemi arendus ja hankimine
2002-... Tarkvara SciPy - teadusarvutuste vahendid Pythoni keskkonnale
1999-... Tarkvara F2PY - vahend Fortran ja C keelte teekide kasutamiseks Pythoni keskkonnas
2009-... Tarkvara PyLibNIDAQmx - Pythoni liides NIDAQmx teegile
2009-... Tarkvara PyLibTiff - Pythoni liides TIFF teegile
2007-... Tarkvara SympyCore - efektiivne sümboolse arvutuse süsteem Pythoni keskkonnale
2009-... Tarkvara IOCBio - mikroskoobia tarkvara (dekonvolutsioon, jm) Pythoni keskkonnale
2012-... Tarkvara "Cluster Design" - veebipõhine programm optimaalse HPCC süsteemi koostamiseks
2012-... Tarkvara "Simple RPC C++" - RPC liidese generaator C/C++ funktsioonidele

Kvalifikatsioon

Teaduskraadid
Pearu Peterson, doktorikraad, 2001, (juh) Jüri Engelbrecht; Embrecht van Groesen, Mitmiksolitonide vastastikmõjud ja laineharjade pöördülesanne, Tallinna Tehnikaülikool.
Pearu Peterson, magistrikraad (teaduskraad), 1997, (juh) Jüri Engelbrecht, Lainelevi dispersiooniga mittekonservatiivses keskkonnas, Tallinna Tehnikaülikool.
 
 
Teaduspreemiad ja tunnustused
2016, Pearu Peterson, TTü Küberneetika Instituut, teadlase teaduspublikatsiooni autasu
2004, Pearu Peterson, TTü Küberneetika Instituut, teadlase teaduspublikatsiooni autasu
2003, Pearu Peterson, TTü Küberneetika Instituut, teadlase teaduspublikatsiooni autasu
2001, Pearu Peterson, TTü Küberneetika Instituut, noorteadlase teaduspublikatsiooni autasu
2000, Pearu Peterson, Eesti Teadusfond, noorteadlase autasu
1997, Pearu Peterson, Eesti Teaduste Akadeemia, tudengi autasu
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 4. Loodusteadused ja tehnika; 4.10. Füüsika; CERCS KLASSIFIKAATOR: P260 Tahke aine: elektrooniline struktuur, elektrilised, magneetilised ja optilised omadused, ülijuhtivus, magnetresonants, spektroskoopia; TÄPSUSTUS: Mittepurustavad fotoelastsuse meetodid pingeväljade määramiseks
ETIS KLASSIFIKAATOR: 4. Loodusteadused ja tehnika; 4.7. Info- ja kommunikatsioonitehnoloogia; CERCS KLASSIFIKAATOR: T121 Signaalitöötlus ; TÄPSUSTUS: Teadusarvutuste tarkvara arendus ja rakendused
ETIS KLASSIFIKAATOR: 4. Loodusteadused ja tehnika; 4.4. Matemaatika; CERCS KLASSIFIKAATOR: P130 Funktsioonid, diferentsiaalvõrrandid ; TÄPSUSTUS: Matemaatilise füüsika mittelineaarsed võrrandid, solitonide teooria, Maxwelli võrrandid

Lõppenud projektid

Juhendatud väitekirjad

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2020
Virtanen, Pauli; Gommers, Ralf; Oliphant, Travis E.; Haberland, Matt; Reddy, Tyler; Cournapeau, David; Burovski, Evgeni; Peterson, Pearu; Weckesser, Warren; Bright, Jonathan; van der Walt, Stéfan J.; Brett, Matthew; Wilson, Joshua; Millman, K. Jarrod; Mayorov, Nikolay; Nelson, Andrew R. J.; Jones, Eric; Kern, Robert; Larson, Eric; Carey, C J ... van Mulbregt, Paul (2020). SciPy 1.0: fundamental algorithms for scientific computing in Python. Nature Methods, 17 (3), 261−272. DOI: 10.1038/s41592-019-0686-2.
1.1.
2020
Harris, Charles R.; Millman, K. Jarrod; van der Walt, Stéfan J.; Gommers, Ralf; Virtanen, Pauli; Cournapeau, David; Wieser, Eric; Taylor, Julian; Berg, Sebastian; Smith, Nathaniel J.; Kern, Robert; Picus, Matti; Hoyer, Stephan; van Kerkwijk, Marten H.; Brett, Matthew; Haldane, Allan; del Río, Jaime Fernández; Wiebe, Mark; Peterson, Pearu; Gérard-Marchant, Pierre ... Oliphant, Travis E. (2020). Array programming with NumPy. Nature, 585 (7825), 357−362.10.1038/s41586-020-2649-2.
3.1.
2019
Aben, Hillar; Anton, Johan; Peterson, Pearu; Õis, Marella (2019). On the fracture mechanics of Prince Rupert's drops. Proceedings of the First International Conference on Theoretical, Applied and Experimental Mechanics [ICTAEM_1 : held in Paphos, Cyprus, June 17-20, 2018]. Ed. Gdoutos, Emmanuel E. Cham: Springer, 158−160. (Structural Integrity; 5).10.1007/978-3-319-91989-8_36.
1.1.
2016
Simson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Peterson, Pearu; Birkedal, Rikke; Vendelin, Marko (2016). Restricted ADP movement in cardiomyocytes: Cytosolic diffusion obstacles are complemented with a small number of open mitochondrial voltage-dependent anion channels. Journal of Molecular and Cellular Cardiology, 97, 197−203.10.1016/j.yjmcc.2016.04.012.
5.1.
2016
Simson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Branovets, Jelena; Peterson, Pearu; Birkedal, Rikke; Vendelin, Marko (2016). Number of open mitochondrial voltage-dependent anion channels and intracellular diffusion coefficient in heart muscle. Biophysical Journal, 110 (3, Supplement 1), 475a. DOI: 10.1016/j.bpj.2015.11.2540.
5.1.
2016
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2016). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. Biophysical Journal, 110 (3, Supplement 1), 463a. DOI: 10.1016/j.bpj.2015.11.2481.
1.1.
2015
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2015). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. PLoS ONE, 10 (9), e0137438, 1−26. DOI: 10.1371/journal.pone.0137438.
5.1.
2015
Laasmaa, Martin; Peterson, Pearu; Vendelin, Marko; Birkedal, Rikke (2015). Action potential clamp data analysis reveals large contribution of sarcoplasmic reticulum in excitation-contraction coupling of trout cardiomyocytes. Acta Physiologica, 215, SI 705, 16.
1.1.
2014
Sepp, Mervi; Sokolova, Niina; Jugai, Svetlana; Mandel, Merle; Peterson, Pearu; Vendelin, Marko (2014). Tight coupling of Na+/K+-ATPase with glycolysis demonstrated in permeabilized rat cardiomyocytes. PLoS ONE, 9 (6), e99413, 1−12. DOI: 10.1371/journal.pone.0099413.
5.1.
2014
Vendelin, M.; Jepihhina, N.; Simson, P.; Laasmaa, M.; Peterson, P. (2014). Diffusion obstacles shape the environment surrounding mitochondria in heart. Acta Physiologica, 211, SI 697, 28.
1.1.
2013
Peterson, Pearu; Kalda, Mari; Vendelin, Marko (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. American Journal of Physiology - Cell Physiology, 304 (6), C519−C531.10.1152/ajpcell.00032.2012.
3.1.
2013
Kalda, Mari; Peterson, Pearu; Engelbrecht, Jüri; Vendelin, Marko (2013). A cross-bridge model describing the mechanoenergetics of actomyosin interaction. Computer Models in Biomechanics : From Nano to Macro. Toim. Holzapfel, Gerhard A.; Kuhl, Ellen. Dordrecht: Springer, 91−102. DOI: 10.1007/978-94-007-5464-5_7.
5.1.
2013
Kalda, Mari; Vendelin, Marko; Peterson, Pearu (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. Biophysical Journal, 104, 509a. DOI: 10.1016/j.bpj.2012.11.2812.
5.1.
2013
Karo, Jaanus; Vendelin, Marko; Peterson, Pearu (2013). Mitochondrial proteins and molecular interaction with cardiolipin at atomistic level. Biophysical Journal, 104, 665a. DOI: 10.1016/j.bpj.2012.11.3673.
5.1.
2013
Simson, Päivo; Vendelin, Marko; Peterson, Pearu (2013). Using raster image correlation spectroscopy for the detection of ADP/ATP diffusion restrictions in rat cardiomyocytes. Biophysical Journal, 104, 509a. DOI: 10.1016/j.bpj.2012.11.2813.
1.1.
2012
Schryer, David W.; Peterson, Pearu; Illaste, Ardo; Vendelin, Marko (2012). Sensitivity analysis of flux determination in heart by H(2) (18)O -provided labeling using a dynamic isotopologue model of energy transfer pathways. PLoS Computational Biology, 8 (12), e1002795, 1−15.10.1371/journal.pcbi.1002795.
1.1.
2012
Karo, Jaanus; Peterson, Pearu; Vendelin, Marko (2012). Molecular dynamics simulations of creatine kinase and adenine nucleotide translocase in mitochondrial membrane patch. Journal of Biological Chemistry, 287 (10), 7467−7476.10.1074/jbc.M111.332320.
1.1.
2012
Illaste, Ardo; Laasmaa, Martin; Peterson, Pearu; Vendelin, Marko (2012). Analysis of molecular movement reveals latticelike obstructions to diffusion in heart muscle cells. Biophysical Journal, 102 (4), 739−748.10.1016/j.bpj.2012.01.012.
5.1.
2012
Illaste, Ardo; Laasmaa, Martin; Peterson, Pearu; Vendelin, Marko (2012). Analysis of molecular movement reveals lattice like obstructions to diffusion in heart muscle cells. Biophysical Journal, 102, 142a−143a. DOI: 10.1016/j.bpj.2011.11.783.
5.1.
2012
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2012). Incorporating cooperativity into Huxley-type cross-bridge models in thermodynamically consistent way. Biophysical Journal, 102, 357a. DOI: 10.1016/j.bpj.2011.11.1950.
5.1.
2012
Schryer, D.W.; Peterson, P.; Illaste, A.; Vendelin, M. (2012). Mathematical model of oxygen labeling to study heart energy transfer. Biophysical Journal, 102, 141a−141a. DOI: 10.1016/j.bpj.2011.11.777.
1.1.
2011
Schryer, David W.; Vendelin, Marko; Peterson, Pearu (2011). Symbolic flux analysis for genome-scale metabolic networks. BMC Systems Biology, 5, Articel 81.10.1186/1752-0509-5-81.
1.1.
2011
Laasmaa, Martin; Vendelin, Marko; Peterson, Pearu (2011). Application of regularized Richardson–Lucy algorithm for deconvolution of confocal microscopy images. Journal of Microscopy, 243 (2), 124−140.10.1111/j.1365-2818.2011.03486.x.
5.1.
2010
Illaste, A.; Schryer, D.W.; Birkedal, R.; Peterson, P; Vendelin, M. (2010). Determination of regional diffusion coefficients of fluorescent ATP in rat cardiomyocytes. Biophysical Journal, 98, 749a−749a. DOI: 10.1016/j.bpj.2009.12.4107.
5.1.
2010
Laasmaa, Martin; Vendelin, Marko; Peterson, Pearu (2010). 3D confocal microscope image enhancement by Richardson-Lucy deconvolution algorithm with total variation regularization: parameters estimation. Biophysical Journal, 98, 178a. DOI: 10.1016/j.bpj.2009.12.954.
1.1.
2009
Schryer, David W.; Peterson, Pearu; Paalme, Toomas; Vendelin, Marko (2009). Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networks. International Journal of Molecular Sciences, 10 (4), 1697−1718. DOI: 10.3390/ijms10041697.
1.1.
2009
Peterson, Pearu (2009). A tool for connecting Fortran and Python programs. International Journal of Computational Science and Engineering, 4 (4), 296−305. DOI: 10.1504/IJCSE.2009.029165.
5.2.
2009
Vendelin, Marko; Kalda, Mari; Peterson, Pearu (2009). Mechanoenergetics of actomyosin interaction analyzed by cross-bridge model. ENUMATH 2009 : June 29 - July 3 2009, Uppsala University, Sweden : Programme & Abstracts. 284.
5.2.
2009
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. ESMC2009 : Proceedings of the 7th EUROMECH Solid Mechanics Conference. Book of Abstracts : Mini-Symposia. Ed. Ambrósio, Jorge A.C.; Silva, Miguel P.T. Lisbon: Portuguese Association for Theoretical, Applied and Computational Mechanics, 331.
5.2.
2009
Schryer, David W.; Peterson, Pearu; Paalme, Toomas; Vendelin, Marko (2009). Isotopomeric 13C labeling of amino acids reveal compartmentation in Saccharomyces uvarum. Biophysical Journal, 96, 308a. DOI: 10.1016/j.bpj.2008.12.1537.
1.1.
2007
Ilison, Lauri; Salupere, Andrus; Peterson, Pearu (2007). On the propagation of localized perturbations in media with microstructure. Proceedings of the Estonian Academy of Sciences. Physics. Mathematics, 56 (2), 84−92.
1.1.
2007
Salupere, A.; Tamm, K.; Engelbrecht, J.; Peterson, P. (2007). On the interaction of deformation waves in microstructured solids. Proceedings of the Estonian Academy of Sciences. Physics. Mathematics, 56 (2), 93−99.
1.1.
2003
Peterson, P.; Soomere, T.; Engelbrecht, J.; van Groesen, E. (2003). Soliton interaction as a possible model for extreme waves in shallow water. Nonlinear Processes in Geophysics, 10 (6), 503−510.
1.1.
2003
Salupere, A.; Engelbrecht, J.; Peterson, P. (2003). On the long-time behaviour of soliton ensembles. Mathematics and Computers in Simulation, 62, 137−147.
1.1.
2003
Salupere, A.; Peterson, P.; Engelbrecht, J. (2003). Long-time behaviour of soliton ensembles. Part II - Periodical patterns of trajectories. Chaos, Solitons and Fractals, 15 (1), 29−40.
1.2.
2003
Soomere, T.; Elken, J.; Kask, J.; Keevallik, S.; Kõuts, T.; Metsaveer, J.; Peterson, P. (2003). Fast ferries as a new key forcing factor in Tallinn Bay. Proceedings of the Estonian Academy of Sciences. Engineering, 9 (3), 220−242.
1.1.
2002
Peterson, P. (2002). Reconstruction of multi-soliton interactions using crest data for (2)-dimensional KdV type equations. Physica D.Nonlinear Phenomena, 171 (4), 221−235.
1.1.
2002
Salupere, A.; Peterson, P.; Engelbrecht, J. (2002). Long-time behaviour of soliton ensembles. Part I - Emergence of ensembles. Chaos, Solitons and Fractals, 14 (9), 1413−1424.
1.1.
2001
Peterson, P.; Groesen, E. van (2001). Sensitivity of the inverse wave crest problem. Wave Motion, 34 (4), 391−399.
2.3.
2001
Peterson, P. (2001). Multi-soliton interactions and the inverse problem of wave crests. (Doktoritöö, Tallinn Technical University). Tallinn: Tallinn Technical University.
3.4.
2001
Peterson, P.; Martins, J.R.R.A.; Alonso, J.J. (2001). Fortran to Python Interface Generator with an application to aerospace engineering. Python : Ninth International Python Conference, Long Beach, California: March 5-8, 2001, Conference proceedings. 19 p.
1.1.
2000
Peterson, P.; Groesen, E. van (2000). A direct and inverse problem for wave crests modelled by interactions of two solitons. Physica D.Nonlinear Phenomena, 141, 316−332.
3.1.
2000
Engelbrecht, J.; Salupere, A.; Peterson, P. (2000). Nonlinear wave motion: Complexity and simplicity revisited. IUTAM/IFToMM Symposium on Synthesis of Nonlinear Dynamical Systems: Proceedings of the IUTAM/IFToMM Symposium held in Riga, Latvia, 24-28 August 1998. Ed. Lavendelis,E.; Zakrzhevsky,M. Dordrecht: Kluwer Academic Publishers, 25−36. (Solid Mechanics and its Applications; 73). DOI: 10.1007/978-94-011-4229-8_3.
1.2.
1997
Peterson, P.; Salupere, A. (1997). Solitons in a perturbed Korteweg-de Vries system. Proceedings of the Estonian Academy of Sciences. Physics. Mathematics, 46, 102−110.
3.4.
1997
Peterson, Pearu (1997). Travelling waves in forced Korteweg-de Vries systems. Tenth Nordic Seminar on Computational Mechanics : Tallinn Technical University, October 24-25, 1997. Tallinn: Tallinn Technical University, 315−317.
21.09.2020

Pearu Peterson

https://www.etis.ee/CV/Pearu_Peterson/eng
pearu.peterson@gmail.com

Career

Institutions and positions
01.11.2018–...   
Cozer OÜ, entrepreneur (1,00)
01.06.2016–...   
Glasstress Ltd, Scientific Researcher (0,10)
01.01.2017–31.10.2018   
Tallinn University of Technology , School of Science, Department of Cybernetics, Laboratory of Solid Mechanics (1,00)
01.01.2016–31.12.2016   
Tallinn University of Technology , Institute of Cybernetics at TUT, Laboratory of Photoelasticity, Senior Researcher (1,00)
01.10.2014–31.12.2016   
Tallinn University of Technology , Institute of Cybernetics at TUT, Vice Director (1,00)
01.09.2008–31.12.2015   
Tallinn University of Technology , Institute of Cybernetics at TUT, Laboratory of Systems Biology, Senior Researcher (1,00)
01.05.2007–30.04.2008   
Simula Research Laboratory, Oslo, Norway, scientific researcher (1,00)
2003–31.08.2008   
Tallinn University of Technology , Institute of Cybernetics at TUT, Laboratory of Nonlinear Dynamics, Senior Researcher (1,00)
01.01.2003–31.12.2006   
Enthought Inc., USA, software developer/consultant
01.01.2001–31.12.2002   
University of Twente, The Netherlands, post-doc
1997–2003   
Tallinn University of Technology , Institute of Cybernetics at TUT, Researcher (1,00)
01.01.1996–31.12.1997   
University of Twente, The Netherlands, researcher
1995–1995   
Tallinn University, Institute of Mathematics and Natural Sciences, Department of Informatics, Informaatika õppetool, Assistant (1,00)
01.01.1994–31.12.1994   
Maritime Research Area of the VTT Manufacturing Technology, Finland, research assistant
1992–1997   
Tallinn University of Technology , Institute of Cybernetics at TUT, Engineer (1,00)
 
 
Education
1997–2001   
Tallinn University of Technology, Technical Physics, Doctor of Philosophy in Natural Sciences, 2001
1995–1995   
University of Jyväskyla, Finland, Faculty of Mathematics and Natural Sciences, 5th International Summer School, Applied Mathematics: courses on Wavelet Theory
1991–1997   
Tallinn University of Technology, Technical Physics, Master of Science in Natural Sciences, 1997
 
 
R&D related managerial and administrative work
2017−2018   
Tallinn University of Technology , School of Science, Department of Cybernetics,, Scientific Council, Member
2014−2106   
Tallinn University of Technology , Institute of Cybernetics at TUT, Vice Director
 
 
Creative work
2014-2015 Development and procurement of CENS microscope system
2002-... Software SciPy - a collection of tools for scientific computing in Python
1999-... Software F2PY - tool for accessing Fortran and C libraries from Python
2009-... Software PyLibNIDAQmx - a Python wrapper to libnidaqmx library
2009-... Software PyLibTiff - a Python wrapper to libtiff library
2007-... Software SympyCore - an efficient pure Python Computer Algebra System
2009-... Software IOCBio - a collection of tools (deconvolution, etc) for microscopy in Python
2012-... Software Cluster Design - a web application for composing optimal HPCC system
2012-... Software Simple RPC C++ - a simple RPC wrapper generator to C/C++ functions

Qualifications

Academic degrees
Pearu Peterson, Doctor's Degree, 2001, (sup) Jüri Engelbrecht; Embrecht van Groesen, Mitmiksolitonide vastastikmõjud ja laineharjade pöördülesanne (Multi-soliton interactions and the inverse problem of wave crests), Tallinn University of Technology.
Pearu Peterson, Research Master's Degree, 1997, (sup) Jüri Engelbrecht, Lainelevi dispersiooniga mittekonservatiivses keskkonnas (Travelling waves in nonconservative media with dispersion), Tallinn University of Technology.
 
 
Honours & awards
2016, Pearu Peterson, Institute of Cybernetics at TTU, Scientist Publication Award
2004, Pearu Peterson, Institute of Cybernetics at TTU, Scientist Publication Award
2003, Pearu Peterson, Institute of Cybernetics at TTU, Scientist Publication Award
2001, Pearu Peterson, Institute of Cybernetics at TTU, Young Scientist Publication Award
2000, Pearu Peterson, Estonian Science Foundation, Young Scientists Award
1997, Pearu Peterson, Estonian Academy of Sciences, Student Award
 
 
Fields of research
ETIS CLASSIFICATION: 4. Natural Sciences and Engineering; 4.10. Physics and Technical Physics; CERCS CLASSIFICATION: P260 Condensed matter: electronic structure, electrical, magnetic and optical properties, supraconductors, magnetic resonance, relaxation, spectroscopy; SPECIFICATION: Nondestructive photoelastic methods for measurement of stress fields
ETIS CLASSIFICATION: 4. Natural Sciences and Engineering; 4.7. Telecommunications; CERCS CLASSIFICATION: T121 Signal processing ; SPECIFICATION: Software for scientific computations: development and applications
ETIS CLASSIFICATION: 4. Natural Sciences and Engineering; 4.4. Mathematics; CERCS CLASSIFICATION: P130 Functions, differential equations ; SPECIFICATION: Nonlinear equations of mathematical physics, soliton theory, Maxwell equations
 
 

Completed projects

Supervised dissertations

Publications

Category
Year
Publication
 
1.1.
2020
Virtanen, Pauli; Gommers, Ralf; Oliphant, Travis E.; Haberland, Matt; Reddy, Tyler; Cournapeau, David; Burovski, Evgeni; Peterson, Pearu; Weckesser, Warren; Bright, Jonathan; van der Walt, Stéfan J.; Brett, Matthew; Wilson, Joshua; Millman, K. Jarrod; Mayorov, Nikolay; Nelson, Andrew R. J.; Jones, Eric; Kern, Robert; Larson, Eric; Carey, C J ... van Mulbregt, Paul (2020). SciPy 1.0: fundamental algorithms for scientific computing in Python. Nature Methods, 17 (3), 261−272. DOI: 10.1038/s41592-019-0686-2.
1.1.
2020
Harris, Charles R.; Millman, K. Jarrod; van der Walt, Stéfan J.; Gommers, Ralf; Virtanen, Pauli; Cournapeau, David; Wieser, Eric; Taylor, Julian; Berg, Sebastian; Smith, Nathaniel J.; Kern, Robert; Picus, Matti; Hoyer, Stephan; van Kerkwijk, Marten H.; Brett, Matthew; Haldane, Allan; del Río, Jaime Fernández; Wiebe, Mark; Peterson, Pearu; Gérard-Marchant, Pierre ... Oliphant, Travis E. (2020). Array programming with NumPy. Nature, 585 (7825), 357−362.10.1038/s41586-020-2649-2.
3.1.
2019
Aben, Hillar; Anton, Johan; Peterson, Pearu; Õis, Marella (2019). On the fracture mechanics of Prince Rupert's drops. Proceedings of the First International Conference on Theoretical, Applied and Experimental Mechanics [ICTAEM_1 : held in Paphos, Cyprus, June 17-20, 2018]. Ed. Gdoutos, Emmanuel E. Cham: Springer, 158−160. (Structural Integrity; 5).10.1007/978-3-319-91989-8_36.
1.1.
2016
Simson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Peterson, Pearu; Birkedal, Rikke; Vendelin, Marko (2016). Restricted ADP movement in cardiomyocytes: Cytosolic diffusion obstacles are complemented with a small number of open mitochondrial voltage-dependent anion channels. Journal of Molecular and Cellular Cardiology, 97, 197−203.10.1016/j.yjmcc.2016.04.012.
5.1.
2016
Simson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Branovets, Jelena; Peterson, Pearu; Birkedal, Rikke; Vendelin, Marko (2016). Number of open mitochondrial voltage-dependent anion channels and intracellular diffusion coefficient in heart muscle. Biophysical Journal, 110 (3, Supplement 1), 475a. DOI: 10.1016/j.bpj.2015.11.2540.
5.1.
2016
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2016). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. Biophysical Journal, 110 (3, Supplement 1), 463a. DOI: 10.1016/j.bpj.2015.11.2481.
1.1.
2015
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2015). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. PLoS ONE, 10 (9), e0137438, 1−26. DOI: 10.1371/journal.pone.0137438.
5.1.
2015
Laasmaa, Martin; Peterson, Pearu; Vendelin, Marko; Birkedal, Rikke (2015). Action potential clamp data analysis reveals large contribution of sarcoplasmic reticulum in excitation-contraction coupling of trout cardiomyocytes. Acta Physiologica, 215, SI 705, 16.
1.1.
2014
Sepp, Mervi; Sokolova, Niina; Jugai, Svetlana; Mandel, Merle; Peterson, Pearu; Vendelin, Marko (2014). Tight coupling of Na+/K+-ATPase with glycolysis demonstrated in permeabilized rat cardiomyocytes. PLoS ONE, 9 (6), e99413, 1−12. DOI: 10.1371/journal.pone.0099413.
5.1.
2014
Vendelin, M.; Jepihhina, N.; Simson, P.; Laasmaa, M.; Peterson, P. (2014). Diffusion obstacles shape the environment surrounding mitochondria in heart. Acta Physiologica, 211, SI 697, 28.
1.1.
2013
Peterson, Pearu; Kalda, Mari; Vendelin, Marko (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. American Journal of Physiology - Cell Physiology, 304 (6), C519−C531.10.1152/ajpcell.00032.2012.
3.1.
2013
Kalda, Mari; Peterson, Pearu; Engelbrecht, Jüri; Vendelin, Marko (2013). A cross-bridge model describing the mechanoenergetics of actomyosin interaction. Computer Models in Biomechanics : From Nano to Macro. Toim. Holzapfel, Gerhard A.; Kuhl, Ellen. Dordrecht: Springer, 91−102. DOI: 10.1007/978-94-007-5464-5_7.
5.1.
2013
Kalda, Mari; Vendelin, Marko; Peterson, Pearu (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. Biophysical Journal, 104, 509a. DOI: 10.1016/j.bpj.2012.11.2812.
5.1.
2013
Karo, Jaanus; Vendelin, Marko; Peterson, Pearu (2013). Mitochondrial proteins and molecular interaction with cardiolipin at atomistic level. Biophysical Journal, 104, 665a. DOI: 10.1016/j.bpj.2012.11.3673.
5.1.
2013
Simson, Päivo; Vendelin, Marko; Peterson, Pearu (2013). Using raster image correlation spectroscopy for the detection of ADP/ATP diffusion restrictions in rat cardiomyocytes. Biophysical Journal, 104, 509a. DOI: 10.1016/j.bpj.2012.11.2813.
1.1.
2012
Schryer, David W.; Peterson, Pearu; Illaste, Ardo; Vendelin, Marko (2012). Sensitivity analysis of flux determination in heart by H(2) (18)O -provided labeling using a dynamic isotopologue model of energy transfer pathways. PLoS Computational Biology, 8 (12), e1002795, 1−15.10.1371/journal.pcbi.1002795.
1.1.
2012
Karo, Jaanus; Peterson, Pearu; Vendelin, Marko (2012). Molecular dynamics simulations of creatine kinase and adenine nucleotide translocase in mitochondrial membrane patch. Journal of Biological Chemistry, 287 (10), 7467−7476.10.1074/jbc.M111.332320.
1.1.
2012
Illaste, Ardo; Laasmaa, Martin; Peterson, Pearu; Vendelin, Marko (2012). Analysis of molecular movement reveals latticelike obstructions to diffusion in heart muscle cells. Biophysical Journal, 102 (4), 739−748.10.1016/j.bpj.2012.01.012.
5.1.
2012
Illaste, Ardo; Laasmaa, Martin; Peterson, Pearu; Vendelin, Marko (2012). Analysis of molecular movement reveals lattice like obstructions to diffusion in heart muscle cells. Biophysical Journal, 102, 142a−143a. DOI: 10.1016/j.bpj.2011.11.783.
5.1.
2012
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2012). Incorporating cooperativity into Huxley-type cross-bridge models in thermodynamically consistent way. Biophysical Journal, 102, 357a. DOI: 10.1016/j.bpj.2011.11.1950.
5.1.
2012
Schryer, D.W.; Peterson, P.; Illaste, A.; Vendelin, M. (2012). Mathematical model of oxygen labeling to study heart energy transfer. Biophysical Journal, 102, 141a−141a. DOI: 10.1016/j.bpj.2011.11.777.
1.1.
2011
Schryer, David W.; Vendelin, Marko; Peterson, Pearu (2011). Symbolic flux analysis for genome-scale metabolic networks. BMC Systems Biology, 5, Articel 81.10.1186/1752-0509-5-81.
1.1.
2011
Laasmaa, Martin; Vendelin, Marko; Peterson, Pearu (2011). Application of regularized Richardson–Lucy algorithm for deconvolution of confocal microscopy images. Journal of Microscopy, 243 (2), 124−140.10.1111/j.1365-2818.2011.03486.x.
5.1.
2010
Illaste, A.; Schryer, D.W.; Birkedal, R.; Peterson, P; Vendelin, M. (2010). Determination of regional diffusion coefficients of fluorescent ATP in rat cardiomyocytes. Biophysical Journal, 98, 749a−749a. DOI: 10.1016/j.bpj.2009.12.4107.
5.1.
2010
Laasmaa, Martin; Vendelin, Marko; Peterson, Pearu (2010). 3D confocal microscope image enhancement by Richardson-Lucy deconvolution algorithm with total variation regularization: parameters estimation. Biophysical Journal, 98, 178a. DOI: 10.1016/j.bpj.2009.12.954.
1.1.
2009
Schryer, David W.; Peterson, Pearu; Paalme, Toomas; Vendelin, Marko (2009). Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networks. International Journal of Molecular Sciences, 10 (4), 1697−1718. DOI: 10.3390/ijms10041697.
1.1.
2009
Peterson, Pearu (2009). A tool for connecting Fortran and Python programs. International Journal of Computational Science and Engineering, 4 (4), 296−305. DOI: 10.1504/IJCSE.2009.029165.
5.2.
2009
Vendelin, Marko; Kalda, Mari; Peterson, Pearu (2009). Mechanoenergetics of actomyosin interaction analyzed by cross-bridge model. ENUMATH 2009 : June 29 - July 3 2009, Uppsala University, Sweden : Programme & Abstracts. 284.
5.2.
2009
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. ESMC2009 : Proceedings of the 7th EUROMECH Solid Mechanics Conference. Book of Abstracts : Mini-Symposia. Ed. Ambrósio, Jorge A.C.; Silva, Miguel P.T. Lisbon: Portuguese Association for Theoretical, Applied and Computational Mechanics, 331.
5.2.
2009
Schryer, David W.; Peterson, Pearu; Paalme, Toomas; Vendelin, Marko (2009). Isotopomeric 13C labeling of amino acids reveal compartmentation in Saccharomyces uvarum. Biophysical Journal, 96, 308a. DOI: 10.1016/j.bpj.2008.12.1537.
1.1.
2007
Ilison, Lauri; Salupere, Andrus; Peterson, Pearu (2007). On the propagation of localized perturbations in media with microstructure. Proceedings of the Estonian Academy of Sciences. Physics. Mathematics, 56 (2), 84−92.
1.1.
2007
Salupere, A.; Tamm, K.; Engelbrecht, J.; Peterson, P. (2007). On the interaction of deformation waves in microstructured solids. Proceedings of the Estonian Academy of Sciences. Physics. Mathematics, 56 (2), 93−99.
1.1.
2003
Peterson, P.; Soomere, T.; Engelbrecht, J.; van Groesen, E. (2003). Soliton interaction as a possible model for extreme waves in shallow water. Nonlinear Processes in Geophysics, 10 (6), 503−510.
1.1.
2003
Salupere, A.; Engelbrecht, J.; Peterson, P. (2003). On the long-time behaviour of soliton ensembles. Mathematics and Computers in Simulation, 62, 137−147.
1.1.
2003
Salupere, A.; Peterson, P.; Engelbrecht, J. (2003). Long-time behaviour of soliton ensembles. Part II - Periodical patterns of trajectories. Chaos, Solitons and Fractals, 15 (1), 29−40.
1.2.
2003
Soomere, T.; Elken, J.; Kask, J.; Keevallik, S.; Kõuts, T.; Metsaveer, J.; Peterson, P. (2003). Fast ferries as a new key forcing factor in Tallinn Bay. Proceedings of the Estonian Academy of Sciences. Engineering, 9 (3), 220−242.
1.1.
2002
Peterson, P. (2002). Reconstruction of multi-soliton interactions using crest data for (2)-dimensional KdV type equations. Physica D.Nonlinear Phenomena, 171 (4), 221−235.
1.1.
2002
Salupere, A.; Peterson, P.; Engelbrecht, J. (2002). Long-time behaviour of soliton ensembles. Part I - Emergence of ensembles. Chaos, Solitons and Fractals, 14 (9), 1413−1424.
1.1.
2001
Peterson, P.; Groesen, E. van (2001). Sensitivity of the inverse wave crest problem. Wave Motion, 34 (4), 391−399.
2.3.
2001
Peterson, P. (2001). Multi-soliton interactions and the inverse problem of wave crests. (Doktoritöö, Tallinn Technical University). Tallinn: Tallinn Technical University.
3.4.
2001
Peterson, P.; Martins, J.R.R.A.; Alonso, J.J. (2001). Fortran to Python Interface Generator with an application to aerospace engineering. Python : Ninth International Python Conference, Long Beach, California: March 5-8, 2001, Conference proceedings. 19 p.
1.1.
2000
Peterson, P.; Groesen, E. van (2000). A direct and inverse problem for wave crests modelled by interactions of two solitons. Physica D.Nonlinear Phenomena, 141, 316−332.
3.1.
2000
Engelbrecht, J.; Salupere, A.; Peterson, P. (2000). Nonlinear wave motion: Complexity and simplicity revisited. IUTAM/IFToMM Symposium on Synthesis of Nonlinear Dynamical Systems: Proceedings of the IUTAM/IFToMM Symposium held in Riga, Latvia, 24-28 August 1998. Ed. Lavendelis,E.; Zakrzhevsky,M. Dordrecht: Kluwer Academic Publishers, 25−36. (Solid Mechanics and its Applications; 73). DOI: 10.1007/978-94-011-4229-8_3.
1.2.
1997
Peterson, P.; Salupere, A. (1997). Solitons in a perturbed Korteweg-de Vries system. Proceedings of the Estonian Academy of Sciences. Physics. Mathematics, 46, 102−110.
3.4.
1997
Peterson, Pearu (1997). Travelling waves in forced Korteweg-de Vries systems. Tenth Nordic Seminar on Computational Mechanics : Tallinn Technical University, October 24-25, 1997. Tallinn: Tallinn Technical University, 315−317.
21.09.2020

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ProgrammLiikNumberNimiProjekti algusProjekti lõppVastutav täitjaAsutusFinantseerijapoolne rahastamine
MUUNE02 (MTKD-CT-2004-013909)Eesti ja Norra teaduskeskuste koostõõ matemaatika ja selle rakenduste alal CENS-CMA01.05.200530.04.2009Jüri EngelbrechtTallinna Tehnikaülikool; Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut873 570,10 EUR
ETFETF5767Ekstreemsed lained: vabapinna mudelite analüüs01.01.200431.12.2008Pearu PetersonTallinna Tehnikaülikool, TTÜ Küberneetika Instituut23 650,10 EUR
MUU273LLaevaliikluse purustav mõju Viimsi poolsaare, Aegna ja Naissaare randadele ning selle neutraliseerimise võimalused23.08.200231.08.2002Tarmo SoomereTallinna Tehnikaülikool; Tallinna Tehnikaülikool, TTÜ Meresüsteemide Instituut12 143,21 EUR
IUTIUT33-24Lainelevi komplekssetes keskkondades ja rakendused01.01.201531.12.2020Andrus SalupereTallinna Tehnikaülikool, TTÜ Küberneetika Instituut; Tallinna Tehnikaülikool, Loodusteaduskond, Küberneetika instituut480 000,00 EUR
IUTIUT33-7Mikrostruktuuri, energiametabolismi ja sooritusvõime vahelised seosed südames01.01.201531.12.2020Marko VendelinTallinna Tehnikaülikool, TTÜ Küberneetika Instituut; Tallinna Tehnikaülikool, Loodusteaduskond, Küberneetika instituut466 800,00 EUR
SFSF0140077s08Mittelineaarne dünaamika ja komplekssüsteemid01.01.200831.12.2013Jüri EngelbrechtTallinna Tehnikaülikool, TTÜ Küberneetika Instituut1 825 683,65 EUR
MUUSF320200s98Mittelineaarne dünaamika ja pingeanalüüs01.01.199831.12.2002Jüri EngelbrechtTallinna Tehnikaülikool; Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut241 074,74 EUR
SFSF0322521s03Mittelineaarne dünaamika ja pingeanalüüs01.01.200331.12.2007Jüri EngelbrechtTallinna Tehnikaülikool, TTÜ Küberneetika Instituut839 671,24 EUR
TKTK124Mittelineaarsete protsesside analüüsi keskus01.01.201131.12.2015Jüri EngelbrechtTallinna Tehnikaülikool, TTÜ Küberneetika Instituut; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Füüsika Instituut2 729 927,47 EUR
MUUEN05-2Südamelihase rakkude adeniinnukleotiidide kompartmentatsiooni struktuursete ja funktsionaalsete aspektide analüüs01.02.201331.01.2014Marko VendelinTallinna Tehnikaülikool, TTÜ Küberneetika Instituut213 179,00 EUR
MUUEN05Südamelihase rakkude adeniinnukleotiidide kompartmentatsiooni struktuursete ja funktsionaalsete aspektide analüüs01.08.200731.01.2013Marko VendelinTallinna Tehnikaülikool; Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut1 098 655,94 EUR
MUUG4068 (ETF4068)Üksiklainete interaktsioon01.01.200031.12.2002Andrus SalupereTallinna Tehnikaülikool; Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut17 703,53 EUR