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Simona Bartkova

https://www.etis.ee/CV/Simona_Bartkova/est
20.03.1986
+372 58213328
simona.bartkova@taltech.ee

Teenistuskäik

Töökohad ja ametid
13.02.2019–...   
Tallinna Tehnikaülikool, Loodusteaduskond, Keemia ja biotehnoloogia instituut, järeldoktor-teadur (1,00)
 
 
Haridustee
2012–30.06.2016   
Doctoral degree in microbiology, The Technical University of Denmark, Copenhagen, Denmark
2010–30.05.2012   
Master of Science in Biology (Molecular Ecology) Lund University, Lund, Sweden
01.08.2006–30.05.2010   
Bachelor of Science Biology (summa cum laude), Dowling College, New York, USA
 
 
Loometöö
2021– Certified CrossFit trainer (CF-OL1).
2018 Winner of the FIBA Women's European Championship For Small Countries 2018 with the Danish Basketball National Team (Cork, International Basketball Federation (FIBA)) http://www.fiba.basketball/europe/smallcountrieswomen/2018.
2004–2020 Basketball player on the Danish National Team .
1996– Enjoy: Surfing, snowboarding, swimming, nature climbing, reading, creative writing .
 
 
Lisainfo
2014 - Now:
Guest scientist at the Danish Cancer Society Research Center in Copenhagen, Denmark.
2016 - 2018
Administrative assistant, player and coach at Eos Basketball club in Lund, Sweden.
2014-2015
Research assistant at the National Veterinary Institute (DTU) during my 5 months PhD sabbatical leave, with associate professor Dalsgaard I. as the head of the research group in Copenhagen, Denmark.
2008 - 2010
Research student employee at Dowling College Microbiology Laboratory under supervision of Dr Shah V. in New York, USA.
2001 - 2006
Basketball coach at Falcon basketball club and the non-profit organization GAM3, Copenhagen, Denmark

Kvalifikatsioon

Teaduskraadid
Simona Bartkova, doktorikraad, 2016, (juh) Inger Dalsgaard, Aeromonas salmonicida - Epidemiology, whole genome sequencing, detection and in vivo imaging, Technical University of Denmark
 
 
Teaduspreemiad ja tunnustused
2010, Simona Bartkova, Dowling College (New York, USA): Graduated with the highest honor (summa cum laude) ECC Women's Basketball Scholar-Athlete of the year Scholar-Athlete of the Year ESPN/CoSIDA Scholar All-American (first female in Dowling’s history)
2006, Simona Bartkova, Falkonergaardens Gymnasium (Copenhagen, Denmark): Team Danmark Student-Athlete of the year
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.2. Mikrobioloogia; CERCS KLASSIFIKAATOR: B230 Mikrobioloogia, bakterioloogia, viroloogia, mükoloogia ; TÄPSUSTUS: Microbiology
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B260 Hüdrobioloogia, mere-bioloogia, veeökoloogia, limnoloogia
 
 
Lisainfo
Techniques/Expertise:
• Droplet microfluidics
• Microscopy imaging
• PCR methods
• Plasmid preparation, ligation, transformation
• Whole genome sequencing preparation and basic analysis
• Sterile techniques in bacterial cell cultivation
• Planning and performing animal infection experiments
• Microsoft Excel
• Image analysis with CellProfiler and to an extent other software
• BioEdit sequence alignment editor
• PERL and R basic programming
• Numerous field-collecting methods, especially related to aquaculture
• Working in diverse teams/groups
Language skills:
Czech = Mother tongue
Danish, English = Fluent
Swedish = Fluent (semi fluent in writing)
Norwegian, German = Moderate
Slovakian = Beginner
Estonian = Beginner (A2)
References: Associate professor Inger Dalsgaard, DTU (Email: inda@aqua.dtu.dk), Dr. Lars Raaberg, Lund University (Email: Lars.Raberg@biol.lu.se)

Additional experience:
- Participated in several international conferences, seminars and workshops, where I also in presented poster and/or gave oral presentation
- Summer introductory course of laboratory techniques at the Institute of Cancer Biology, at the Danish Cancer Society, Copenhagen, Denmark
- EMBO Laboratory Leadership for Postdocs course, October 2021
- Member of COST action network

Lõppenud projektid

Juhendamisel väitekirjad

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2021
Bartkova, Simona; Kahru, Anne; Heinlaan, Margit; Scheler, Ott (2021). Techniques used for analyzing microplastics, antimicrobial resistance and microbial community composition: a mini-review. Frontiers in Microbiology, 12, 603967. DOI: 10.3389/fmicb.2021.603967.
1.1.
2021
Shalima, T.; Mishra, K. A.; Kaabel, S.; Ustrnul, L.; Bartkova, S.; Tõnsuaadu, K.; Heinmaa, I.; Aav, R. (2021). Cyclohexanohemicucurbit[8]uril Inclusion Complexes With Heterocycles and Selective Extraction of Sulfur Compounds From Water. Frontiers in Chemistry, 9. DOI: 10.3389/fchem.2021.786746.
1.1.
2021
Sanka, I.; Bartkova, S.; Pata, P.; Smolander, O.P.; Scheler, O. (2021). Investigation of Different Free Image Analysis Software for High-Throughput Droplet Detection. ACS Omega, 6 (35), 22625−22634. DOI: 10.1021/acsomega.1c02664.
1.1.
2020
Bartkova, Simona; Vendelin, Marko; Sanka, Immanuel; Pata, Pille; Scheler, Ott (2020). Droplet image analysis with user-friendly freeware CellProfiler. Analytical Methods, 12 (17), 2287−2294. DOI: 10.1039/D0AY00031K.
3.1.
2020
Bartkova, Simona; Vendelin, Marko; Pata, Pille; Scheler, Ott (2020). Cellprofiler is a fit tool for droplet digital image analysis. 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019. , 1644−1645. DOI: 10.1101/811869.
1.1.
2017
Raberg, L.; Hagstrom, A.; Andersson, M.; Bartkova, S.; Scherman, K.; Strandh, M.; Tschirren, B. (2017). Evolution of antigenic diversity in the tick-transmitted bacterium Borrelia afzelii: a role for host specialization? Journal of Evolutionary Biology, 30 (5), 1034−1041. DOI: 10.1111/jeb.13075.
1.1.
2017
Bartkova, S.; Leekitcharoenphon, P.; Aarestrup, F. M.; Dalsgaard, I. (2017). Epidemiology of Danish Aeromonas salmonicida subsp salmonicida in Fish Farms Using Whole Genome Sequencing. Frontiers in Microbiology, 8, #2411. DOI: 10.3389/fmicb.2017.02411.
1.1.
2016
Bartkova, S.; Kokotovic, B.; Skall, H. F.; Lorenzen, N.; Dalsgaard, I. (2016). Detection and quantification of Aeromonas salmonicida in fish tissue by real-time PCR. Journal of Fish Diseases, 40 (2), 231−242. DOI: 10.1111/jfd.12505.
1.1.
2016
Bartkova, S.; Kokotovic, B.; Dalsgaard, I. (2016). Infection routes of Aeromonas salmonicida in rainbow trout monitored in vivo by real-time bioluminescence imaging. Journal of Fish Diseases, 40 (1), 73−82. DOI: 10.1111/jfd.12491.
1.1.
2013
Andersson, M.; Bartkova, S.; Lindestad, O.; Raberg, L. (2013). Co-Infection with 'Candidatus Neoehrlichia mikurensis' and Borrelia afzelii in Ixodes ricinus Ticks in Southern Sweden. Vector-Borne and Zoonotic Diseases, 13 (7), 438−442. DOI: 10.1089/vbz.2012.1118.
19.04.2022

Simona Bartkova

https://www.etis.ee/CV/Simona_Bartkova/eng
20.03.1986
+372 58213328
simona.bartkova@taltech.ee
Publon ID: AAF-5556-2019

Career

Institutions and positions
13.02.2019–...   
Tallinn University of Technology , School of Science, Department of Chemistry and Biotechnology, Postdoctoral Researcher (1,00)
 
 
Education
2012–30.06.2016   
Doctoral degree in microbiology, The Technical University of Denmark, Copenhagen, Denmark
2010–30.05.2012   
Master of Science in Biology (Molecular Ecology) Lund University, Lund, Sweden
01.08.2006–30.05.2010   
Bachelor of Science Biology (summa cum laude), Dowling College, New York, USA
 
 
Creative work
2021- Certified CrossFit trainer (CF-OL1).
2018 Winner of the FIBA Women's European Championship For Small Countries 2018 with the Danish Basketball National Team (Cork, International Basketball Federation (FIBA)) http://www.fiba.basketball/europe/smallcountrieswomen/2018.
2004-2020 Basketball player on the Danish National Team .
1996- Enjoy: CrossFit, surfing, snowboarding, swimming, nature climbing, reading, creative writing .
 
 
Additional information
2014 - Now:
Guest scientist at the Danish Cancer Society Research Center in Copenhagen, Denmark.
2016 - 2018
Administrative assistant, player and coach at Eos Basketball club in Lund, Sweden.
2014-2015
Research assistant at the National Veterinary Institute (DTU) during my 5 months PhD sabbatical leave, with associate professor Dalsgaard I. as the head of the research group in Copenhagen, Denmark.
2008 - 2010
Research student employee at Dowling College Microbiology Laboratory under supervision of Dr Shah V. in New York, USA.
2001 - 2006
Basketball coach at Falcon basketball club and the non-profit organization GAM3, Copenhagen, Denmark

Qualifications

Academic degrees
Simona Bartkova, Doctor's Degree, 2016, (sup) Inger Dalsgaard, Aeromonas salmonicida - Epidemiology, whole genome sequencing, detection and in vivo imaging, Technical University of Denmark
 
 
Honours & awards
2010, Simona Bartkova, Dowling College (New York, USA): Graduated with the highest honor (summa cum laude) ECC Women's Basketball Scholar-Athlete of the year Scholar-Athlete of the Year ESPN/CoSIDA Scholar All-American (first female in Dowling’s history)
2006, Simona Bartkova, Falkonergaardens Gymnasium (Copenhagen, Denmark): Team Danmark Student-Athlete of the year
 
 
Fields of research
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.2. Microbiology; CERCS CLASSIFICATION: B230 Microbiology, bacteriology, virology, mycology ; SPECIFICATION: Microbiology
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B260 Hydrobiology, marine biology, aquatic ecology, limnology
 
 
Additional information
Techniques/Expertise:
• Droplet microfluidics
• Microscopy imaging
• PCR methods
• Plasmid preparation, ligation, transformation
• Whole genome sequencing preparation and basic analysis
• Sterile techniques in bacterial cell cultivation
• Planning and performing animal infection experiments
• Microsoft Excel
• Image analysis with CellProfiler and to an extent other software
• BioEdit sequence alignment editor
• PERL and R basic programming
• Numerous field-collecting methods, especially related to aquaculture
• Working in diverse teams/groups
Language skills:
Czech = Mother tongue
Danish, English = Fluent
Swedish = Fluent (semi fluent in writing)
Norwegian, German = Moderate
Slovakian = Beginner
Estonian = Beginner (A2)
References: Associate professor Inger Dalsgaard, DTU (Email: inda@aqua.dtu.dk), Dr. Lars Raaberg, Lund University (Email: Lars.Raberg@biol.lu.se)
Additional experience:
- Participated in several international conferences, seminars and workshops, where I also in presented poster and/or gave oral presentation
- Summer introductory course of laboratory techniques at the Institute of Cancer Biology, at the Danish Cancer Society, Copenhagen, Denmark
- EMBO Laboratory Leadership for Postdocs course, October 2021
- Member of COST action network

Completed projects

Dissertations under supervision

Publications

Category
Year
Publication
 
1.1.
2021
Bartkova, Simona; Kahru, Anne; Heinlaan, Margit; Scheler, Ott (2021). Techniques used for analyzing microplastics, antimicrobial resistance and microbial community composition: a mini-review. Frontiers in Microbiology, 12, 603967. DOI: 10.3389/fmicb.2021.603967.
1.1.
2021
Shalima, T.; Mishra, K. A.; Kaabel, S.; Ustrnul, L.; Bartkova, S.; Tõnsuaadu, K.; Heinmaa, I.; Aav, R. (2021). Cyclohexanohemicucurbit[8]uril Inclusion Complexes With Heterocycles and Selective Extraction of Sulfur Compounds From Water. Frontiers in Chemistry, 9. DOI: 10.3389/fchem.2021.786746.
1.1.
2021
Sanka, I.; Bartkova, S.; Pata, P.; Smolander, O.P.; Scheler, O. (2021). Investigation of Different Free Image Analysis Software for High-Throughput Droplet Detection. ACS Omega, 6 (35), 22625−22634. DOI: 10.1021/acsomega.1c02664.
1.1.
2020
Bartkova, Simona; Vendelin, Marko; Sanka, Immanuel; Pata, Pille; Scheler, Ott (2020). Droplet image analysis with user-friendly freeware CellProfiler. Analytical Methods, 12 (17), 2287−2294. DOI: 10.1039/D0AY00031K.
3.1.
2020
Bartkova, Simona; Vendelin, Marko; Pata, Pille; Scheler, Ott (2020). Cellprofiler is a fit tool for droplet digital image analysis. 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019. , 1644−1645. DOI: 10.1101/811869.
1.1.
2017
Raberg, L.; Hagstrom, A.; Andersson, M.; Bartkova, S.; Scherman, K.; Strandh, M.; Tschirren, B. (2017). Evolution of antigenic diversity in the tick-transmitted bacterium Borrelia afzelii: a role for host specialization? Journal of Evolutionary Biology, 30 (5), 1034−1041. DOI: 10.1111/jeb.13075.
1.1.
2017
Bartkova, S.; Leekitcharoenphon, P.; Aarestrup, F. M.; Dalsgaard, I. (2017). Epidemiology of Danish Aeromonas salmonicida subsp salmonicida in Fish Farms Using Whole Genome Sequencing. Frontiers in Microbiology, 8, #2411. DOI: 10.3389/fmicb.2017.02411.
1.1.
2016
Bartkova, S.; Kokotovic, B.; Skall, H. F.; Lorenzen, N.; Dalsgaard, I. (2016). Detection and quantification of Aeromonas salmonicida in fish tissue by real-time PCR. Journal of Fish Diseases, 40 (2), 231−242. DOI: 10.1111/jfd.12505.
1.1.
2016
Bartkova, S.; Kokotovic, B.; Dalsgaard, I. (2016). Infection routes of Aeromonas salmonicida in rainbow trout monitored in vivo by real-time bioluminescence imaging. Journal of Fish Diseases, 40 (1), 73−82. DOI: 10.1111/jfd.12491.
1.1.
2013
Andersson, M.; Bartkova, S.; Lindestad, O.; Raberg, L. (2013). Co-Infection with 'Candidatus Neoehrlichia mikurensis' and Borrelia afzelii in Ixodes ricinus Ticks in Southern Sweden. Vector-Borne and Zoonotic Diseases, 13 (7), 438−442. DOI: 10.1089/vbz.2012.1118.
19.04.2022