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Urmas Kõljalg

https://www.etis.ee/CV/Urmas_Kõljalg/eng
24.02.1961
737 6235
5341 2823 (6235)
urmas.koljalg@ut.ee

Career

Institutions and positions
01.01.2016–...   
University of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences, Head of Chair
01.01.2016–...   
University of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences, Academician
01.01.2016–...   
University of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences, Professor in Mycology (1,00)
01.01.2014–...   
University of Tartu, University of Tartu Natural History Museum and Botanical Garden, Head
01.01.2014–...   
University of Tartu, University of Tartu Natural History Museum and Botanical Garden, Project Manager
01.01.2005–...   
University of Tartu, Director of the Natural History Museum
01.01.2014–31.01.2017   
University of Tartu, University of Tartu Natural History Museum and Botanical Garden, Academician
01.01.2014–31.01.2017   
University of Tartu, University of Tartu Natural History Museum and Botanical Garden, Academician
01.01.2014–31.01.2017   
University of Tartu, University of Tartu Natural History Museum and Botanical Garden, Director
01.03.2013–31.12.2013   
University of Tartu, University of Tartu Museum, Project Manager
07.12.2011–31.12.2015   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Academician
07.12.2011–31.12.2013   
University of Tartu, University of Tartu Museum, Academician
01.09.2011–31.12.2013   
University of Tartu, University of Tartu Museum, Director
01.09.2011–31.12.2013   
University of Tartu, University of Tartu Museum, Member of Council
01.09.2011–31.12.2015   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Head of Chair
01.09.2011–31.12.2015   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Professor in Mycology (1,00)
06.04.2009–31.08.2011   
University of Tartu, University of Tartu Museum, Director
06.04.2009–31.08.2011   
University of Tartu, University of Tartu Museum, Member of Council
01.12.2008–31.12.2010   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Professor of Mycology
01.01.2008–31.08.2011   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Head of Chair
01.01.2008–31.08.2011   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Professor of Mycology (1,00)
01.08.2007–31.12.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Ecology and Earth Sciences, Head
01.08.2007–31.12.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Ecology and Earth Sciences, Professor (1,00)
06.02.2007–28.02.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Botany and Ecology, Acting Head of Institute
01.02.2007–05.04.2009   
University of Tartu, Tartu University Museums, Director
01.09.2006–31.07.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Botany and Ecology, Professor (1,00)
01.09.2006–31.01.2007   
University of Tartu, Tartu University Museums, Acting Director
01.09.2006–31.07.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Botany and Ecology, Head
01.09.2006–05.04.2009   
University of Tartu, Tartu University Museums, Member of Council
01.02.2006–31.08.2006   
University of Tartu, Tartu University Museums, Acting Director
01.03.2005–31.01.2006   
University of Tartu, Tartu University Museums, Acting Director
01.03.2005–31.08.2006   
University of Tartu, Tartu University Museums, Member of Council
01.01.2003–31.12.2004   
University of Gothenburg, Carl and Tecla Lambergs guest professorship
01.09.2001–31.08.2006   
University of Tartu, Faculty of Biology and Geography, Institute of Botany and Ecology, Professor (1,00)
01.01.1999–31.12.2001   
Institute of Botany and Ecology, University of Tartu, Docent (1,00)
01.01.1998–31.12.2004   
Inst. of Zoology and Boatny, Senior Researcher and the Head of the Mycological Department (1,00)
01.01.1997–31.12.1999   
University of Göteborg, Part time postdoc
01.01.1996–31.12.1997   
Inst. of Zoology and Botany, Estonian Agricultural University, Research Associate (1,00)
01.01.1992–31.12.1996   
University of Tartu and University of Helsinki, Ph.D. student
01.01.1988–31.12.1993   
Inst. of Zoology and Botany, Senior Laboratory Assistant (1,00)
 
 
Education
1994–1996   
1996 Ph.D. of the University of Helsinki in botany
1983–1988   
1988 Diploma of the University of Tartu in botany
 
 
R&D related managerial and administrative work
2017−...   
President of the Estonian Naturalist's Society
2011−...   
Member of the Estonian Academy of Sciences
1995−...   
Member of the British Mycological Society (since 1995).
1997−2006   
Member of the Board of the Estonian Naturalist’s Society (since 1997).
1996−2006   
Editor in Chief of the journal Folia Cryptogamica Estonica (since 1996).
1994−1999   
Chairman of the Estonian Mycological Society (1994-1999).

Qualifications

Academic degrees
Urmas Kõljalg, Doctor's Degree, 1996, (sup) Tuomo Niemelä; Erast Parmasto, Tomentella (Basidiomycota) and related genera in Temperate Eurasia (Tomentella (Basidiomycota) and related genera in Temperate Eurasia), Helsingi.
 
 
Honours & awards
2020, Urmas Kõljalg, Estonian National Science Prize
2003, Urmas Kõljalg, Carl and Tecla Lambergs guest professorship in the University of Gothenburg (2003-2004).
1997, Urmas Kõljalg, Estonian National Science Prize
 
 
Fields of research
ETIS RESEARCH FIELD: 1. Biosciences and Environment; 1.2. Microbiology; CERCS RESEARCH FIELD: B230 Microbiology, bacteriology, virology, mycology ; SPECIFICATION: Interactions between fungi and plant roots, taxonomy and evolution of fungi.
ETIS RESEARCH FIELD: 4. Natural Sciences and Engineering; 4.6. Computer Sciences; CERCS RESEARCH FIELD: P175 Informatics, systems theory ; SPECIFICATION: Technologies for the storage, management and analyses of biodiversity data.
ETIS RESEARCH FIELD: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology
 
 

Projects in progress

Completed projects

Dissertations under supervision

Supervised dissertations

Publications

Category
Year
Publication
 
1.1.
2022
Bahram, Mohammad; Espenberg, Mikk; Pärn, Jaan; Lehtovirta-Morley, Laura; Anslan, Sten; Kasak, Kuno; Kõljalg, Urmas; Liira, Jaan; Maddison, Martin; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Pärtel, Meelis; Soosaar, Kaido; Zobel, Martin; Hildebrand, Falk; Tedersoo, Leho; Mander, Ülo (2022). Structure and function of the soil microbiome underlying N2O emissions from global wetlands. Nature Communications, 13, 1430. DOI: 10.1038/s41467-022-29161-3.
1.1.
2022
Runnel, Kadri; Abarenkov, Kessy; Copot, Ovidiu; Mikryukov, Vladimir; Kõljalg, Urmas; Saar, Irja; Tedersoo, Leho (2022). DNA barcoding of fungal specimens using PacBio long-read high-throughput sequencing. Molecular Ecology Resources [forthcoming].
1.1.
2021
Tamme, Riin; Pärtel, Meelis; Kõljalg, Urmas; Laanisto, Lauri; Liira, Jaan; Mander, Ülo; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Ostonen, Ivika; Tedersoo, Leho; Zobel, Martin (2021). Global macroecology of nitrogen‐fixing plants. Global Ecology and Biogeography, 30, 514−526. DOI: 10.1111/geb.13236.
1.1.
2021
Leho Tedersoo, Vladimir Mikryukov, Sten Anslan, Mohammad Bahram, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aída‑M. Vasco‑Palacios, Alessandro Saitta, Alexandre Antonelli, Andrea C. Rinaldi, Annemieke Verbeken, Bobby P. Sulistyo, Boris Tamgnoue, Brendan Furneaux, Camila Duarte Ritter, Casper Nyamukondiwa, Cathy Sharp, César Marín, D. Q. Dai, Daniyal Gohar, Dipon Sharmah, Elisabeth Machteld Biersma, Erin K. Cameron, Eske De Crop, Eveli Otsing, Evgeny A. Davydov, Felipe E. Albornoz, Francis Q. Brearley, Franz Buegger, Genevieve Gates, Geofrey Zahn, Gregory Bonito, Indrek Hiiesalu, Inga Hiiesalu, Irma Zettur, Isabel C. Barrio, Jaan Pärn, Jacob Heilmann‑Clausen, Jelena Ankuda, John Y. Kupagme, Joosep Sarapuu, Jose G. Maciá‑Vicente, Joseph Djeugap Fovo, József Geml, Juha M. Alatalo, Julieta Alvarez‑Manjarrez, Jutamart Monkai, Kadri Põldmaa, Kadri Runnel, Kalev Adamson, Kari A. Bråthen, Karin Pritsch, Kassim I. Tchan, Kęstutis Armolaitis, Kevin D. Hyde, Kevin K. Newsham, Kristel Panksep, Lateef A. Adebola, Louis J. Lamit, Malka Saba, Marcela E. da Silva Cáceres, Maria Tuomi, Marieka Gryzenhout, Marijn Bauters, Miklós Bálint, Nalin Wijayawardene, Niloufar Hagh‑Doust, Nourou S. Yorou, Olavi Kurina, Peter E. Mortimer, Peter Meidl, R. Henrik Nilsson, Rasmus Puusepp, Rebeca Casique‑Valdés, Rein Drenkhan, Roberto Garibay‑Orijel, Roberto Godoy, Saleh Alfarraj, Saleh Rahimlou, Sergei Põlme, Sergey V. Dudov, Sunil Mundra, Talaat Ahmed, Tarquin Netherway, Terry W. Henkel, Tomas Roslinm, Vladimir E. Fedosov, Vladimir G. Onipchenko, W. A. Erandi Yasanthika, Young Woon Lim, Meike Piepenbring; Darta Klavina, Urmas Kõljalg, Kessy Abarenkov (2021). The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity, 111, 573−588. DOI: 10.1007/s13225-021-00493-7.
1.1.
2021
Svantesson, S.; Kõljalg, U.; Wurzbacher, C.; Saar, I.; Larsson, K.-H.; Larsson, E. (2021). Polyozellus vs. Pseudotomentella: generic delimitation with a multi-gene dataset. Fungal Systematics and Evolution, 8, 143−154. DOI: 10.3114/fuse.2021.08.11.
1.1.
2021
Savchenko, Anton; Zamora, Juan Carlos; Shirouzu, Takashi; Spirin, Viacheslav; Malysheva, Vera; Kõljalg, Urmas; Miettinen, Otto; (2021). Revision of Cerinomyces (Dacrymycetes, Basidiomycota) with notes on morphologically and historically related taxa. Studies in Mycology, 99 (100117), 1−72. DOI: 10.1016/j.simyco.2021.100117.
1.1.
2020
Kõljalg, Urmas; Nilsson, Henrik R.; Schigel, Dmitry; Tedersoo, Leho; Larsson, Karl-Henrik; May, Tom W.; Taylor, Andy F. S.; Jeppesen, Thomas Stjernegaard; Frøslev, Tobias Guldberg; Lindahl, Björn D.; Põldmaa, Kadri; Saar, Irja; Suija, Ave; Savchenko, Anton; Yatsiuk, Iryna; Adojaan, Kristjan; Ivanov, Filipp; Piirmann, Timo; Pöhönen, Raivo; Zirk, Allan ... Abarenkov, Kessy (2020). The Taxon Hypothesis Paradigm—On the Unambiguous Detection and Communication of Taxa. Microorganisms, 8 (12), 1910. DOI: 10.3390/microorganisms8121910.
1.1.
2020
Tedersoo, Leho; Anslan, Sten; Bahram, Mohammad; Drenkhan, Rein; Pritsch, Karin; Buegger, Franz; Padari, Allar; Hagh-Doust, Niloufar; Mikryukov, Vladimir; Gohar, Daniyal; Amiri, Rasekh; Hiiesalu, Indrek; Lutter, Reimo; Rosenvald, Raul; Rähn, Elisabeth; Adamson, Kalev; Drenkhan, Tiia; Tullus, Hardi; Jürimaa, Katrin; Sibul, Ivar ... Abarenkov, Kessy (2020). Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe. Frontiers in Microbiology, 11, ARTN 1953. DOI: 10.3389/fmicb.2020.01953.
1.1.
2020
Schigel, Dmitry; Andersson, Anders; Bissett, Andrew; Finstad, Anders; Fossøy, Frode; Grosjean, Marie; Hope, Michael; Kõljalg, Urmas; Lundin, Daniel; Nilsson, R. Henrik; Prager, Maria; Jeppesen, Thomas; Svenningsen, Cecilie (2020). Mapping and Publishing Sequence-Derived Data through Biodiversity Data Platforms. Biodiversity Information Science and Standards, 4. DOI: 10.3897/biss.4.59212.
1.1.
2019
Nilsson, R.H.; Larsson, K-H.; Taylor, A.F.S.; Bengtsson-Palme, J.; Jeppesen, T.S.; Schigel, D.; Kennedy, P.; Picard, K.; Glöckner, F.O.; Tedersoo, L.; Saar, I.; Kõljalg, U.; Abarenkov, K. (2019). The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acid Research, 47 (Database issue), D259−D264. DOI: 10.1093/nar/gky1022.
1.1.
2019
Saar, I.; Oja, J.; Põldmaa, K.; Pärtel, K.; Zettur, I.; Kõljalg, U. (2019). Red List of Estonian Fungi - 2019 update. Folia Cryptogamica Estonica, 56, 117−126. DOI: 10.12697/fce.2019.56.12.
1.1.
2019
Syantesson, Sten; Larsson, Karl-Henrik; Kõljalg, Urmas; May, Tom W.; Cangrenu, Patrik; Nilsson, R. Henrik; Larsson, Ellen (2019). Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) - a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys, 50, 1−77. DOI: 10.3897/mycokeys.50.32432.
1.1.
2019
Larsson, Karl-Henrik; Svantesson, Sten; Miscevic, Diana; Kõljalg, Urmas; Larsson, Ellen (2019). Reassessment of the generic limits for Hydnellum and Sarcodon (Thelephorales, Basidiomycota). MycoKeys, 54, 31−47. DOI: 10.3897/mycokeys.54.35386.
1.1.
2019
Põldmaa, Kadri; Spirin, Viacheslav; Miettinen, Otto; Runnel, Kadri; Savchenko, Anton; Pärtel, Kadri; Kõljalg, Urmas (2019). Fungi from Soomaa National Park: rarities and species new for Estonia. Folia Cryptogamica Estonica, 56, 127−136. DOI: 10.12697/fce.2019.56.13.
1.1.
2018
Nilsson, R. Henrik; Taylor, Andy F. S.; Adams, Rachel I.; Baschien, Christiane; Bengtsson-Palme, Johan; Cangren, Patrik; Coleine, Claudia; Daniel, Heide-Marie; Glassman, Sydney I.; Hirooka, Yuuri; Irinyi, Laszlo; Irsenaite, Reda; Martin-Sanchez, Pedro M.; Meyer, Wieland; Oh, Seung-Yoon; Sampaio, Jose Paulo; Seifert, Keith A.; Sklenar, Frantisek; Stubbe, Dirk; Suh, Sung-Oui ... Abarenkov, Kessy (2018). Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys, 28, 65−82. DOI: 10.3897/mycokeys.28.20887.
1.1.
2018
Zamora, Juan Carlos; Svensson, Mans; Kirschner, Roland; Olariaga, Ibai; Ryman, Svengunnar; Alberto Parra, Luis; Geml, Jozsef; Rosling, Anna; Adamcik, Slavomir; Ahti, Teuvo; Aime, M. Catherine; Ainsworth, A. Martyn; Albert, Laszlo; Alberto, Edgardo; Garcia, Alberto Altes; Ageev, Dmitry; Agerer, Reinhard; Aguirre-Hudson, Begona; Ammirati, Joe; Andersson, Harry ... Ekmani, Stefan (2018). Considerations and consequences of allowing DNA sequence data as types of fungal taxa. IMA Fungus, 9 (1), 167−175. DOI: 10.5598/imafungus.2018.09.01.10.
1.1.
2018
Wetzel, FT.; Bingham, HC.; Groom, Q.; Haase, P.; Kõljalg, U.; Kuhlmann, M.; Martin, CS.; Penev, L.; Robertson, T.; Saarenmaa, H.; Schmeller, DS.; Stoll, S.; Tonkin, JD.; Häuser, CL. (2018). Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe. Biological Conservation, 221, 78−85. DOI: 10.1016/j.biocon.2017.12.024.
6.3.
2018
Voitk, A.; Saar, I.; Trudell, S.; Spirin, V.; Beug, M.; Kõljalg, U. (2018). Maria’s mushroom. Omphalina, IX (4), 9−18.
1.1.
2017
Oja, Jane; Vahtra, Johanna; Bahram, Mohammad; Kohout, Petr; Kull, Tiiu; Rannap, Riinu; Kõljalg, Urmas; Tedersoo, Leho (2017). Local-scale spatial structure and community composition of orchid mycorrhizal fungi in semi-natural grasslands. Mycorrhiza, 27 (4), 355−367. DOI: 10.1007/s00572-016-0755-7.
1.1.
2017
Grube, Martin; Gaya, Ester; Kauserud, Havard; Smith, Adrian M.; Avery, Simon V.; Fernstad, Sara J.; Muggia, Lucia; Martin, Michael D.; Eivindsen, Tove; Koljalg, Urmas; Bendiksby, Mika (2017). The next generation fungal diversity researcher. Fungal Biology Reviews, 31 (3), 124−130.10.1016/j.fbr.2017.02.001.
1.1.
2017
Johansson V.; Bahram, M; Tedersoo, L.; Kõljalg, U.; Eriksson O. (2017). Specificity of fungal associations of Pyroleae and Monotropa hypopitys during germination and seedling development. Molecular Ecology, 26 (9), 2591−2604. DOI: 10.1111/mec.14050.
1.1.
2017
Voitk, A.; Saar, I.; Trudell, S.; Spirin, V.; Beug, M.; Kõljalg, U. (2017). Polyozellus multiplex (Thelephorales) is a species complex containing four new species. Mycologia, 109, 6, 975−992.10.1080/00275514.2017.1416246.
3.1.
2017
Põlme, S.; Bahram, M.; Kõljalg, U.; Tedersoo, L. (2017). Biogeography and specificity of ectomycorrhizal fungi of Coccoloba uvifera. Ecological Studies, 230, 345−359. DOI: 10.1007/978-3-319-56363-3_16.
1.1.
2016
Abarenkov, K.; Adams, R.I.; Irinyi, L.; Agan, A.; Ambrosio, E.; Antonelli, A.; Bahram, M.; Bengtsson-Palme, J.; Bok, G.; Cangren, P.; Coimbra, V.; Coleine, C.; Gustafsson, C.; He, J.; Hofmann, T.; Kristiansson, E.; Larsson, E.; Larsson, T.; Liu, Y.; Martinsson, S. ... Nilsson, R.H. (2016). Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys, 16, 1−15. DOI: 10.3897/mycokeys.16.10000.
1.1.
2016
Hibbett D, Abarenkov K, Kõljalg U, Öpik M, Chai B, Cole JR, Wang Q, Crous PW, Robert VARG, Helgason T, Herr J, Kirk P, Lueschow S, O’Donnell K, Nilsson H, Oono R, Schoch CL, Smyth C, Walker D, Porras-Alfaro A, Taylor JW, Geiser DM. (2016). Sequence-based classification and identification of Fungi. Mycologia, 108 (6), 1049−1068. DOI: 10.3852/16-130.
1.1.
2016
Põlme, Sergei; Öpik, Maarja; Moora, Mari; Zobel, Martin; Kohout, Petr; Oja, Jane; Kõljalg, Urmas; Tedersoo, Leho (2016). Arbuscular mycorrhizal fungi associating with roots of Alnus and Rubus in Europe and the Middle East. Fungal Ecology, 24A, 27−34.
1.1.
2016
Tedersoo, L., Liiv, I., Kivistik, P.A., Anslan, S., Kõljalg, U., Bahram, M. (2016). Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruitbody and ectomycorrhiza specimens. MycoKeys, 13, 1−20. DOI: 10.3897/mycokeys.13.8140.
6.8.
2016
Kõljalg, U.; Tedersoo, L.; Nilsson, R.H.; Abarenkov, K. (2016). Digital identifiers for fungal species. Science, 352, 1182−1183. DOI: 10.1126/science.aaf7115.
1.1.
2015
Oja, J.; Kohout, P.; Tedersoo, L.; Kull, T.; Kõljalg, U. (2015). Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing. New Phytologist, 205 (4), 1608−1618. DOI: 10.1111/nph.13223.
1.1.
2015
Nilsson, R.H.; Tedersoo, L.; Ryberg, M.; Kristiansson, E.; Hartmann, M.; Unterseher, M.; Porter, T.M.; Bengtsson-Palme, J.; Walker, D.M.; De Sousa, F.; Gamper, H.A.; Larsson, E.; Larsson, K.-H.; Kõljalg, U.; Edgar, R.C.; Abarenkov, K. (2015). A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts. Microbes and Environments, 30 (2), 145−150. DOI: 10.1264%2Fjsme2.ME14121.
1.1.
2015
Tedersoo, Leho; Anslan, Sten; Bahram, Mohammad; Põlme, Sergei; Riit, Taavi; Liiv, Ingrid; Kõljalg, Urmas; Kisand, Veljo; Nilsson, R. Henrik; Hildebrand, Falk; Bork, Peer; Abarenkov, Kessy (2015). Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys, 10, 1−43. DOI: 10.3897/mycokeys.10.4852.
6.8.
2015
Tedersoo, Leho; Ramirez, Kelly S.; Nilsson, R Henrik; Kaljuvee, Aivi; Kõljalg, Urmas; Abarenkov, Kessy (2015). Standardizing metadata and taxonomic identification in metabarcoding studies. GigaScience, 4 (34), 1−4. DOI: 10.1186/s13742-015-0074-5.
6.8.
2015
Tedersoo, L.; Bahram, M.; Põlme, S.; Anslan, S.; Riit, T.; Kõljalg, U.; Nilsson, R.H.; Hildebrand, F.; Abvarenkov, K. (2015). Response to comment on “Global diversity and geography of soil fungi”: Analytical biases in microbial diversity studies. Science, 349 (6251), 936−936. DOI: 10.1126/science.aaa5594.
1.1.
2014
Tedersoo, L.; Bahram, M.; Põlme, S.; Kõljalg, U.; Yorou, N.S.; Wijesundera, R.; Villarreal-Ruiz, L.; Vasco-Palacios, A.; Quang Thu, P.; Suija, A.; Smith, M.E.; Sharp, C.; Saluveer, E.; Saitta, A.; Ratkowsky, D.; Pritsch, K.; Riit, T.; Põldmaa, K.; Piepenbring, M.; Phosri, C. ... Abarenkov, K. (2014). Global diversity and geography of soil fungi. Science, 346 (6213), 1078. DOI: 10.1126/science.1256688.
1.1.
2014
Nilsson, R. Henrik; Hyde, Kevin D.; Pawłowska, Julia; Ryberg, Martin; Tedersoo, Leho; Aas, Anders Bjørnsgard; Alias, Siti A.; Alves, Artur; Anderson, Cajsa Lisa; Antonelli, Alexandre; Arnold, A. Elizabeth; Bahnmann, Barbara; Bahram, Mohammad; Bengtsson-Palme, Johan; Berlin, Anna; Branco, Sara; Chomnunti, Putarak; Dissanayake, Asha; Drenkhan, Rein; Friberg, Hanna ... Abarenkov, Kessy (2014). Improving ITS sequence data for identification of plant pathogenic fungi. Fungal Diversity, 67 (1), 11−19. DOI: 10.1007/s13225-014-0291-8.
1.1.
2014
Tedersoo, L.; Bahram, M.; Ryberg, M.; Otsing, E.; Kõljalg, U.; Abarenkov, K. (2014). Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetics analyses. Molecular Ecology, 23 (16), 4168−4183. DOI: 10.1111/mec.12849.
1.1.
2014
Schoch, C.L.; Robbertse, B.; Robert, V.; Vu, D.; Cardinali, G.; Irinyi, L.; Kõljalg, U.; Tedersoo, L.; Federnse, S. (2014). Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database, bau061. DOI: 10.1093/database/bau061.
1.1.
2014
Tedersoo, L.; Harend, H.; Buegger, F.; Pritsch, K.; Saar, I.; Kõljalg, U. (2014). Stable isotope analysis, field observations and synthesis experiments suggest that Odontia is a non-mycorrhizal sister genus of Tomentella and Thelephora. Fungal Ecology, 11, 80−90. DOI: 10.1016/j.funeco.2014.04.006.
1.1.
2014
Põlme, Sergei; Bahram, Mohammad; Kõljalg, Urmas; Tedersoo, Leho (2014). Global biogeography of Alnus associated Frankia actonibacteria. New Phytologist, 204 (4), 979−988. DOI: 10.1111/nph.12962.
1.1.
2013
Bahram, M.; Kõljalg, U.; Courty, P.; Diédhiou, AG.; Kjøller, R.; Põlme, S.; Ryberg, M.; Veldre, V.; Tedersoo, L. (2013). The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales. Journal of Ecology, 101 (5), 1335−1344. DOI: 10.1111/1365-2745.12120.
1.1.
2013
Kõljalg, Urmas; Nilsson, Henrik; Abarenkov, Kessy; Tedersoo, Leho; Taylor, Andy; Bahram, Mohammad; Bates, Scott; Bruns, Thomas; Bengtsson-Palme, Johan; O'Callaghan, Tony; Douglas, Brian; Drenkhan, Tiia; Eberhardt, Ursula; Dueñas, Margarita; Grebenc, Tine; Griffith, Gareth; Hartmann, Martin; Kirk, Paul; Kohout, Petr; Larsson, Ellen ... Larsson, Karl-Henrik (2013). Towards a unified paradigm for sequence-based identification of Fungi. Molecular Ecology, 22 (21), 5271−5277. DOI: 10.1111/mec.12481.
1.1.
2013
Veldre, V.; Abarenkov, K.; Bahram, M.; Martos, F.; Selosse, M.-A.; Tamm, H.; Kõljalg, U.; Tedersoo, L. (2013). Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences. Fungal Ecology, 6 (4), 256−268. DOI: 10.1016/j.funeco.2013.03.004.
1.1.
2013
Põlme, S.; Bahram, M.; Yamanaka, T.; Nara, K.; Dai, Y. C.; Grebenc, T.; Kraigher, H.; Toivonen, M.; Wang, P.; Matsuda, Y.; Naadel, T.; Kennedy, P.; Kõljalg, U.; Tedersoo, L. (2013). Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale. New Phytologist, 198 (4), 1239−1249. DOI: 10.1111/nph.12170.
1.1.
2013
Lindahl, Björn D.; Nilsson, R. Henrik; Tedersoo, Leho; Abarenkov, Kessy; Carlsen, Tor; Kjøller, Rasmus; Kõljalg, Urmas; Pennanen, Taina; Rosendahl, Søren; Stenlid, Jan; Kauserud, Håvard (2013). Fungal community analysis by high-throughput sequencing of amplified markers – a user's guide. New Phytologist, 199 (1), 288−299. DOI: 10.1111/nph.12243.
1.1.
2013
Zhou, Li-Wei; Kõljalg, Urmas (2013). A new species of Lenzitopsis (Thelephorales, Basidiomycota) and its phylogenetic placement. Mycoscience, 54 (1), 87−92.10.1016/j.myc.2012.06.002.
1.1.
2012
Phosri, Cherdchai; Põlme, Sergei; Taylor, Andy F. S.; Kõljalg, Urmas; Suwannasai, Nuttika; Tedersoo, Leho (2012). Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21 (9), 2287−2298. DOI: 10.1007/s10531-012-0250-1.
1.1.
2012
Tedersoo, L.; Naadel, T.; Bahram, M.; Pritsch, K.; Buegger, F.; Leal, M.; Kõljalg, U.; Põldmaa, K. (2012). Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest. New Phytologist, 195 (4), 832−843. DOI: 10.1111/j.1469-8137.2012.04217.x.
1.1.
2012
Tedersoo, L.; Bahram, M.; Toots, M.; Diédhiou, A.G.; Henkel, T.W.; Kjøller, R.; Morris, M.H.; Nara, K.; Nouhra, E.; Peay, K.G.; Põlme, S.; Ryberg, M.; Smith, M.E.; Kõljalg, U. (2012). Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Molecular Ecology, 21 (17), 4160−4170. DOI: 10.1111/j.1365-294X.2012.05602.x.
1.1.
2012
Schoch, C.L.; Seifert, K.A.; Huhndorf, S.; Robert, V.; Spouge, J.L.; Levesque, C.A.; Chen, W.; Bolchacova, E.; Voigt, K.; Crous, P.W.; Miller, A.N.; Wingfield, M.J.; Kõljalg, U.; Tedersoo, L. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, 109 (16), 6241−6246. DOI: 10.1073/pnas.1117018109.
1.1.
2012
Bahram M, Kõljalg U, Kohout P, Mirshahvaladi S, Tedersoo L. (2012). Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa. Mycorrhiza, DOI: 10.1007/s00572-012-0445-z.
1.1.
2012
Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Zarre, Shahin; Tedersoo, Leho (2012). Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran. New Phytologist, 193 (2), 465−473.
1.2.
2012
Nilsson, R.H.; Tedersoo, L.; Abarenkov, K.; Ryberg, M.; Kristiansson, E.; Hartmann, M.; Schoch, C.L.; Nylander, J.A.A.; Bergsten, J.; Porter, T.M.; Jumpponen, A.; Vaishampayan, P.; Ovaskainen, O.; Hallenberg, N.; Bengtsson-Palme, J.; Eriksson, K.M.; Larsson, K.-H.; Larsson, E.; Kõljalg, U. (2012). Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences. MycoKeys, 4, 37−62. DOI: 10.3897/mycokeys.4.3606.
6.6.
2012
Helm, A; Zobel, M; Pärtel, M; Trass, H; Kõljalg, U. (2012). Seaduse musklid või avalik huvi. .
1.1.
2011
Tedersoo, L.; Bahram, M.; Jairus, T.; Bechem, E.; Chinoya, S.; Mpumba, R.; Leal, M.l; Randrianjohany, E.; Razafimandimbison, S.; Sadam, A.; Naadel, T.; Kõljalg, U. (2011). Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar. Molecular Ecology, 20 (14), 3071−3080.
1.1.
2011
Nilsson, R.H.; Tedersoo, L.; Lindahl, B.; Kjoller, R.; Carlsen, T.; Quince, C.; Abarenkov, K.; Pennanen, T.; Stenlid, J.; Bruns, T.; Larsson, K.-H.; Kõljalg, U.; Kauserud, H. (2011). Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytologist, 191 (2), 314−318.
1.1.
2011
Bahram, M; Põlme, S; Kõljalg, U; Tedersoo, L (2011). A single European aspen (Populus tremula) tree individual may potentially harbour dozens of Cenococcum geophilum ITS genotypes and hundreds of species of ectomycorrhizal fungi. FEMS Microbiology Ecology, 75 (2), 313−320. DOI: 10.1111/j.1574-6941.2010.01000.x.
1.1.
2011
Nilsson, RH; Veldre, V; Wang, Z; Eckart, M; Branco, S; Hartmann, M; Quince, C; Godhe, A; Bertrand, Y; Alfredsson, JF; Larsson, K-H; Kõljalg, U; Abarenkov, K. (2011). A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation. Mycoscience, 52 (4), 278−282. DOI: 10.1007/s10267-010-0086-z.
1.1.
2011
Tedersoo, L; Abarenkov, K; Nilsson, RH; Schüβler, A; Grelet, G-A; Kohout, P; Oja, J; Bonito, GM; Veldre, V; Jairus, T; Ryberg, M; Larsson, K-H; Kõljalg, U. (2011). Tidying up International Nucleotide Sequence Databases: ecological, geographical and sequence quality annotation of ITS sequences of mycorrhizal fungi. PLoS ONE, 6 (9), e24940. DOI: 10.1371/journal.pone.0024940.
3.2.
2011
Saar, I.; Suija, A.; Kõljalg, U. (2011). Uutest seeneliikidest Eestis [New fungal records in Estonia]. Kull, T.; Liira, J.; Sammul, M. (Toim.). Eesti Looduseuurijate Seltsi aastaraamat (188−195). . Eesti Looduseuurijate Selts.
6.3.
2011
Kõljalg, Urmas; Abarenkov, Kessy (2011). Elurikkuse informaatika. Parmasto, Erast; Laisk, Agu; Kaljo, Dimitri. (Toim.). Teadusmõte Eestis. Elu ja Maateadused (17−26). . Tallinn: Eesti Teaduste Akadeemia: Eesti Teaduste Akadeemia Toimetised.
1.1.
2010
Abarenkov, K; Tedersoo, L; Nilsson, RH; Vellak, K; Saar, I; Veldre, V; Parmasto, E; Prous, M; Aan, A; Ots, M; Kurina, O; Ostonen, I; Jõgeva, J; Halapuu, S; Põldmaa, K; Toots, M; Truu, J; Larsson, K-H; Kõljalg, U (2010). PlutoF – a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evolutionary Bioinformatics, 189−196. DOI: 10.4137/EBO.S6271.
1.1.
2010
Tedersoo, L.; Nilsson, R.H.; Abarenkov, K.; Jairus, T.; Sadam, A.; Saar, I.; Bahram, M.; Bechem, E.; Chuyong, G.; Kõljalg, U. (2010). 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist, 188 (1), 291−301. DOI: 10.1111/j.1469-8137.2010.03373.x.
1.1.
2010
Abarenkov, Kessy; Nilsson, R. Henrik; Larsson, Karl-Henrik; Alexander, Ian J.; Eberhardt, Ursula; Erland, Susanne; Høiland, Klaus; Kjøller, Rasmus; Larsson, Ellen; Pennanen, Taina; Sen, Robin; Taylor, Andy F. S.; Tedersoo, Leho; Ursing, Björn M.; Vrålstad, Trude; Liimatainen, Kare; Peintner, Ursula; Kõljalg, Urmas (2010). The UNITE database for molecular identification of fungi – recent updates and future perspectives. New Phytologist, 186 (2), 281−285. DOI: 10.1111/j.1469-8137.2009.03160.x.
1.1.
2010
Barrett, Craig F.; Freudenstein, John V.; Taylor, D. Lee; Kõljalg, Urmas (2010). Rangewide analysis of fungal associations in the fully mycoheterotrophic Corallorhiza striata complex (Orchidaceae) reveals extreme specificity on ectomycorrhizal Tomentella (Thelephoraceae) across North America. American Journal of Botany, 97 (4), 628−643.10.3732/ajb.0900230.
1.1.
2010
Suvi, T.; Tedersoo, L.; Abarenkov, K.; Beaver, K.; Gerlach, J.; Kõljalg, U. (2010). Mycorrhizal symbionts of Pisonia grandis and P. sechellarum in Seychelles: identification of mycorrhizal fungi and description of new Tomentella species. Mycologia, 102 (3), 522−533. DOI: 10.3852/09-147.
1.1.
2009
Tedersoo, L.; Gates, G.; Dunk, C.; Lebel, T.; May, T.W.; Kõljalg, U.; Jairus, T. (2009). Establishment of ectomycorrhizal fungal community on isolated Nothofagus cunninghamii seedlings regenerating on dead wood in Australian wet temperate forests: does fruit-body type matter. Mycorrhiza, 19 (6), 403−416. DOI: 10.1007/s00572-009-0244-3.
1.1.
2009
Kõljalg, U.; Bernicchia, A.; Saar, I.. (2009). Tomentellopsis pulchella sp. nov. from St. Vitale Pine Forest (Ravenna, Italy). Mycotaxon, 107, 53−60.
1.1.
2009
Saar, I.; Põldmaa, K.; Kõljalg, U. (2009). The phylogeny and taxonomy of genera Cystoderma and Cystodermella (Agaricales) based on nuclear ITS and LSU sequences. Mycological Progress, 8 (1), 59−73. DOI: 10.1007/s11557-008-0578-9.
1.1.
2008
Bidartondo, MI.; Bruns, TD.; Blackwell, M.; Edwards, I.; Taylor, AFS.; Horton, T.; Zhang, N.; Kõljalg, U.; May, G.; Kuyper, TW. (2008). Preserving accuracy in GenBank. Science, 319 (5870), 1616. DOI: 10.1126/science.319.5870.1616a.
1.1.
2008
Vincenot, L.; Tedersoo, L.; Richard, F.; Horcine, H.; Kõljalg, U.; Selosse, MA. (2008). Fungal associates of Pyrola rotundifolia, a mixotrophic Ericaceae, from two Estonian boreal forests. Mycorrhiza, 19 (1), 1−11. DOI: 10.1007/s00572-008-0199-9.
1.1.
2008
Tedersoo, L.; Jairus, T.; Horton, B.M.; Abarenkov, A.; Suvi, T.; Saar, I.; Kõljalg, U. (2008). Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytologist, 180 (2), 479−490. DOI: 10.1111/j.1469-8137.2008.02561.x.
1.1.
2008
Tedersoo, L.; Suvi, T.; Jairus, T.; Kõljalg, U. (2008). Forest microsite effects on community composition of ectomycorrhizal fungi on seedlings of Picea abies and Betula pendula. Environmental Microbiology, 10 (5), 1189−1201. DOI: 10.1111/j.1462-2920.2007.01535.x.
2.2.
2008
Ernits, Enn; Hints, Olle; Hints, Rutt; Isakar, Mare; Kaljo, Dimitri; Kiipus, Merike; Kurina, Olavi; Kõljalg, Urmas; Lõugas, Lembi; Noorhani, Piret; Ots, Mirja; Parmasto, Erast; Pärtel, Meelis; Reier, Ülle; Tamla, Ülle; Toomsalu, Maie; Truu, Jaak; Viikberg, Jüri; Västrik, Ergo-Hart (2008). Eesti humanitaar- ja loodusteaduslikud kogud. Seisund, kasutamine, andmebaasid. Tartu: Tartu Ülikooli Kirjastus.
3.2.
2008
Hints, O.; Kõljalg, U. (2008). Ülevaade loodusteaduslikest kogudest. Parmasto, E., Viikberg, J.. Eesti humanitaar- ja loodusteaduslikud kogud. Seisund, kasutamine, andmebaasid (139−152). . Tartu: Tartu Ülikooli Kirjastus.
3.3.
2008
Abarenkov, Kessy; Kõljalg, Urmas; Parmasto, Erast; Kuslapuu, Aavo (2008). PlutoF 1.0. Veebi-töölaud andmete sisestamiseks, toimetamiseks ja vaatamiseks (vaatlused, kollektsioonid, liigid jt. taksonid, DNA-andmed jm). Kasutusjuhend looduseuurijale. Tartu: Tartu Ülikooli Kirjastus.
1.1.
2007
Teder, T.; Moora, M.; Roosaluste, E.; Zobel, K.; Pärtel, M.; Kõljalg, U.;Zobel, M. (2007). Monitoring of biological diversity: a common-ground approach. Conservation Biology, 21 (2), 313−317.
1.1.
2007
Miettinen, O.; Kõljalg, U. (2007). Amaurodon sumatranus (Thelephorales, Basidiomycota), a new species from Indonesia. Mycotaxon, 100, 51−59.
1.1.
2007
Di Marino, E.; Kõljalg, U.; Agerer, R. (2007). The ectomycorrhizae of Pseudotomentella humicola on Picea abies. Nova Hedwigia, 84, 429−440.
1.1.
2007
Tedersoo, L.; Suvi, T.; Beaver, K.; Kõljalg, U. (2007). Ectomycorrhizal fungi of the Seychelles: diversity patterns and host shifts from the native Vateriopsis seychellarum (Dipterocarpaceae) and Intsia bijuga (Caesalpiniaceae) to the introduced Eucalyptus robusta (Myrtaceae), but not Pinus caribea (Pinaceae). New Phytologist, 175 (2), 321−333.
1.1.
2007
Hibbett, D.S.; Binder, M.; Bischoff, J.F.; Blackwell, M.; Cannon, P.F.; Eriksson, O.E.; Huhndorf, S.; James, T.; Kirk, P.M.; Lücking, R.; Thorsten Lumbusch, H.; Lutzoni, F.; Matheny, P.B.; Mclaughlin, D.J.; Powell, M.J.; Redhead, S.; Schoch, C.L.; Spatafora, J.W.; Stalpers, J.A.; Vilgalys, R. ... Zhang, N. (2007). A higher-level phylogenetic classification of the Fungi. Mycological Research, 111, 509−547.
1.1.
2007
Yorou, N.S.; Kõljalg, U.; Sinsin, B.; Agerer, R. (2007). Studies in African thelephoroid fungi: 1. Tomentella capitata and Tomentella brunneocystidia, two new species from Benin (West Africa) with capitate cystidia. Mycological Progress, 7−18. DOI: 10.1007/s11557-006-0519-4.
1.1.
2007
Tedersoo, L.; Pellet, P.; Kõljalg, U.; Selosse, M.-A. (2007). Parallel evolutionary paths to mycoheterotrophy in understorey Ericaceae and Orchidaceae: ecological evidence for mixotrophy in Pyroleae. Oecologia, 151 (2), 206−217. DOI: 10.1007/s00442-006-0581-2.
1.1.
2006
Tedersoo, L.; Suvi, T.; Larsson, E.; Kõljalg, U. (2006). Diversity and community structure of ectomycorrhizal fungi in a wooded meadow. Mycological Research, 110, 734−748.
1.1.
2006
Nilsson, R.H.; Larsson, K.-H.; Larsson, E.; Kõljalg, U. (2006). Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota). Mycological Research, 110 (12), 1426−1432.
1.2.
2006
Nilsson, R.H.; Ryberg, M.; Kristiansson, E.; Abarenkov, K.; Larsson, K.-H.; Kõljalg, U. (2006). Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS ONE, 1 (1), e59 . DOI: 10.1371/journal.pone.0000059.
3.1.
2006
Starast, M.; Kõljalg, U.; Karp, K.; Vool, E.; Noormets, M.; Paal, T. (2006). Mycorrhizal colonization of half-high blueberry cultivars influenced by cultural practices. In: Lopes da Fonseca, L.; Romero Muñoz, F. (Ed.). Proceedings of the VIII International Symposium on Vaccinium Culture (449−454). . Leuven, Belgium: ISHS. (Acta Horticulturae; 715).
5.2.
2006
Tedersoo, L.; Pellet, P.; Kõljalg, U.; Selosse, M-A. (2006). Mixotrophy in understorey subshrubs: isotopic evidence. Abstracts of IMC8: International Mycological Congress VIII; August 2006; Cairns, Austraalia. Cairns, Austraalia.
1.1.
2005
Koljalg, U.; Larsson, KH.; Abarenkov, K.; Nilsson, RH.; Alexander, IJ.; Eberhardt, U.; Erland, S.; Hoiland, K.; Kjoller, R.; Larsson, E.; Pennanen, T.; Sen, R.; Taylor, AFS.; Tedersoo, L.; Vralstad, T.; Ursing, BM. (2005). UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist, 166 (3), 1063−1068.
1.1.
2004
Larsson, KH.; Larsson, E.; Kõljalg, U. (2004). High phylogenetic diversity among corticioid homobasidiomycetes. Mycological Research, 108, 983−1002.
1.1.
2003
Tedersoo, L.; Koljalg, U.; Hallenberg, N.; Larsson, KH. (2003). Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in a mixed forest. New Phytologist, 159 (1), 153−165.
1.1.
2003
Opik, M.; Moora, M.; Liira, J.; Koljalg, U.; Zobel, M.; Sen, R. (2003). Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils. New Phytologist, 160 (3), 581−593.
3.5.
2003
Zobel, M.; Kõljalg, U.; Mänd, R.; Teder, T.; Zobel, K. (2003). Bioloogilise mitmekesisuse seire - kas me vajame üldist süsteemi? Kaasaegse ökoloogia probleemid (Eesti IX Ökoloogiakonverentsi lühiartiklid, Tartu, 11-12. aprill, 2003). Toim. Frey, T. Tartu: Tartu Ülikooli Kirjastus, 351−355.
1.2.
2002
Kõljalg, U.; Tammi, H.; Timonen, S.; Agerer, R.; Sen, R. (2002). ITS rDNA sequence-based positioning of Pink-type ectomycorrhizas and Tomentellopsis species from boreal and temperate forests. Mycological Progress, 1 (1), 81−92.
1.3.
2002
Kõljalg, U. (2002). Kirjatükk Eesti Rahvusliku Loodusmuuseumi vajalikkusest. Akadeemia, 8, 1681−1689.
1.2.
2001
Kõljalg, U.; Dunstan, W. (2001). Pseudotomentella larsenii sp. nov. (Thelephorales), a common ectomycorrhiza former in dry eucalypt woodland and forests of Western Australia. Harvard Papers in Botany, 6 (1), 123−130.
3.2.
2001
Kõljalg, U.; Jakucs, E; Boka, K.; Agerer, R. (2001). Three ectomycorrhiza with cystidia formed by different Tomentella species as revealed by rDNA ITS sequences and anatomical characteristics. In: Folia cryptogamica estonica (27−39).. Tartu: Estonian Naturalists' Society.
1.1.
2000
Koljalg, U.; Dahlberg, A.; Taylor, AFS.; Larsson, E.; Hallenberg, N.; Stenlid, J.; Larsson, KH.; Fransson, PM.; Jonsson, L. (2000). Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests. Molecular Ecology, 9 (12), 1985−1996.
1.2.
2000
Kõljalg, U.; Renvall, P (2000). Hydnellum gracilipes ­ a link between stipitate and resupinate Hymenomycetes. Karstenia, 40, 71−77.
3.2.
2000
Kõljalg, U. (2000). Kas mükoloogial on tulevikku? Engelbrecht, J.; Ergma, E. (Toim.). Noored teaduses (20−23).. Tallinn: Eesti Teaduste Akadeemia Kirjastus.
6.2.
2000
Alamäe, T.; Kull, K.; Kõljalg, U.; Masso, R.; Ustav, M. (2000). Biologija dlja gimnazii, 2 tšast. Eesti Loodusfoto.
6.2.
2000
Alamäe, T.; Kull, K.; Kõljalg, U.; Masso, R.; Ustav, M. (2000). Bioloogia gümnaasiumile 2. osa. Hein, K. (Toim.). Bioloogia gümnaasiumile 2. osa (35−50). . Tartu: Eesti Loodusfoto.
1.1.
1999
Poldmaa, K.; Larsson, E.; Koljalg, U. (1999). Phylogenetic relationships in Hypomyces and allied genera, with emphasis on species growing on wood-decaying homobasidiomycetes. Canadian Journal of Botany-Revue Canadienne de Botanique, 77 (12), 1756−1768.
3.2.
1999
Salkinoja-Salonen, MS.; Andersson, M.; Mikkola, R.; Paananen, A.; Peltola, J.; Mussalo-Rauhamaa, H.; Vuorio, R.; Saris, N-E.; Grigorjev, P.; Helin, J.; Kõljalg, U.; Timonen, T. (1999). Toxigenic microbes in indoor environment: identification, structure and biological effects of the aerosolizing toxins. In: Johanning, E. (Ed.). Bioaerosols, Fungi & Mycotoxins: Health Effects, Assessment, Prevention and Control (359−374).. Albany New York, USA: Eastern New York Occupational and Environmental Health Center.
5.2.
1999
Kõljalg, U. (1999). Molecular phylogeny of Thelephorales. 25 Years of Mycology in Tübingen. Book of abstracts. University of Tübingen, 16−17.
3.2.
1998
Kõljalg, U.; Larsson, E. (1998). Pseudotomentella ochracea sp. nov., based on morphological and molecular data. In: Kõljalg, U.; Vaasma, M. (Ed.). Taxonomy and phylogeny of homobasidomycetes : papers dedicated to Elmar E. Leppik and Erast Parmasto (53−56). . Tartu. (Folia cryptogamica Estonica; 33).
4.2.
1998
Kõljalg, U.; Vaasma, M. (Eds.) (1998). Taxonomy and phylogeny of Homobasidiomycetes. Tartu: Estonian Naturalists' Society.
1.1.
1997
Koljalg, U.; Ryvarden, L. (1997). A new species of Amaurodon (Basidiomycota, Aphyllophorales). Mycotaxon, 65, 107−111.
1.1.
1997
Andersson, MA.; Nikulin, M.; Koljalg, U.; Rainey, F.; Reijula, K.; Hintikka, EL.; SalkinojaSalonen, M. (1997). Bacteria, molds, and toxins in water-damaged building materials. Applied and Environmental Microbiology, 63 (2), 387−393.
1.2.
1996
Langer, E.; Hallenberg, N.; Knudsen, H.; Kõljalg, U.; Langer, G.; Larsson, K.-H.; Oberwinkler, F.; Parmasto, E.; Ryvarden, L.; Vesterholt, J. (1996). Proposal to reject the names Xylodon and Schizopora in favour of Hyphodontia, nom. cons. (Fungi, Corticiaceae). Taxon, 45, 685−686.
2.2.
1996
Kõljalg, U. (1996). Tomentella and related genera in Temperate Eurasia. Oslo: Fungiflora.
1.1.
1992
Kõljalg, U. (1992). Mycorrhiza formed by basidiospores of Tomentella crinalis on Pinus sylvestris. Mycological Research, 96, 215−220.
1.2.
1992
Kõljalg, U.; Mukhamedshin, R. (1992). Tomentelloid fungi in the Caucasus. Mikol. I fitopat, 26 (1), 20−22.
3.2.
1989
Kõljalg, U. (1989). Tomentelloid fungi new for the Soviet Union. In: Folia cryptogamica estonica (123−23).. Tartu: Estonian Naturalists' Society.
1.06.2022

Urmas Kõljalg

https://www.etis.ee/CV/Urmas_Kõljalg/est
24.02.1961
737 6235
5341 2823 (6235)
urmas.koljalg@ut.ee

Teenistuskäik

Töökohad ja ametid
01.01.2016–...   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut, õppetooli juhataja
01.01.2016–...   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut, akadeemik
01.01.2016–...   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut, mükoloogia professor (1,00)
01.01.2014–...   
Tartu Ülikool, Tartu Ülikooli loodusmuuseum ja botaanikaaed, juhataja
01.01.2014–...   
Tartu Ülikool, Tartu Ülikooli loodusmuuseum ja botaanikaaed, projektijuht
01.01.2005–...   
Tartu Ülikool, Loodusmuuseumi direktor
01.01.2014–31.01.2017   
Tartu Ülikool, Tartu Ülikooli loodusmuuseum ja botaanikaaed, akadeemik
01.01.2014–31.01.2017   
Tartu Ülikool, Tartu Ülikooli loodusmuuseum ja botaanikaaed, akadeemik
01.01.2014–31.01.2017   
Tartu Ülikool, Tartu Ülikooli loodusmuuseum ja botaanikaaed, direktor
01.03.2013–31.12.2013   
Tartu Ülikool, Tartu Ülikooli muuseum, projektijuht
07.12.2011–31.12.2015   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, akadeemik
07.12.2011–31.12.2013   
Tartu Ülikool, Tartu Ülikooli muuseum, akadeemik
01.09.2011–31.12.2013   
Tartu Ülikool, Tartu Ülikooli muuseum, direktor
01.09.2011–31.12.2013   
Tartu Ülikool, Tartu Ülikooli muuseum, juhatuse liige
01.09.2011–31.12.2015   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, õppetooli juhataja
01.09.2011–31.12.2015   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, mükoloogia professor (1,00)
06.04.2009–31.08.2011   
Tartu Ülikool, Tartu Ülikooli muuseum, direktor
06.04.2009–31.08.2011   
Tartu Ülikool, Tartu Ülikooli muuseum, juhatuse liige
01.12.2008–31.12.2010   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, mükoloogia professor
01.01.2008–31.08.2011   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, õppetooli juhataja
01.01.2008–31.08.2011   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, mükoloogia professor (1,00)
01.08.2007–31.12.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Tartu Ülikooli Ökoloogia ja Maateaduste Instituut , juhataja
01.08.2007–31.12.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Tartu Ülikooli Ökoloogia ja Maateaduste Instituut , mükoloogia professor (1,00)
06.02.2007–28.02.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Botaanika ja ökoloogia instituut, instituudi juhataja kohusetäitja
01.02.2007–05.04.2009   
Tartu Ülikool, Tartu Ülikooli Muuseumid, direktor
01.09.2006–31.07.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Botaanika ja ökoloogia instituut, mükoloogia professor (1,00)
01.09.2006–31.01.2007   
Tartu Ülikool, Tartu Ülikooli Muuseumid, direktori kohusetäitja
01.09.2006–31.07.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Botaanika ja ökoloogia instituut, juhataja
01.09.2006–05.04.2009   
Tartu Ülikool, Tartu Ülikooli Muuseumid, juhatuse liige
01.02.2006–31.08.2006   
Tartu Ülikool, Tartu Ülikooli Muuseumid, direktori kohusetäitja
01.03.2005–31.01.2006   
Tartu Ülikool, Tartu Ülikooli Muuseumid, direktori kohusetäitja
01.03.2005–31.08.2006   
Tartu Ülikool, Tartu Ülikooli Muuseumid, juhatuse liige
01.01.2003–31.12.2004   
Göteborgi Ülikool, Carl ja Tecla Lambergi nimeline külalisprofessuur
01.09.2001–31.08.2006   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Botaanika ja ökoloogia instituut, mükoloogia professor (1,00)
01.01.1999–31.12.2001   
Tartu Ülikool, dotsent ning mükoloogia õppetooli hoidja (1,00)
01.01.1998–31.12.2004   
EPMÜ Zooloogia ja Botaanika Instituut, vanemteadur ja mükoloogia osakonna juhataja (1,00)
01.01.1997–31.12.1999   
Göteborgi Ülikooli Evolutsioonilise botaanika instituut, järeldoktor (osalise koormusega)
01.01.1996–31.12.1997   
Zooloogia ja Botaanika Instituut, teadur. (1,00)
01.01.1992–31.12.1996   
Tartu ja Helsingi Ülikool, doktorant
01.01.1988–31.12.1993   
Zooloogia ja Botaanika Instituut, vanemlaborant (1,00)
 
 
Haridustee
1994–1996   
Helsingi Ülikool, Ph.D. botaanikas
1983–1988   
Tartu Ülikool, diplom botaanikas
 
 
Teadusorganisatsiooniline ja -administratiivne tegevus
2017−...   
Eesti Loodusuurijate Seltsi president
2011−...   
Eesti Teaduste Akadeemia liige
1995−...   
Briti Mükoloogia Ühingu liige.
1997−2006   
Eesti Looduseuurijate Seltsi presiidiumi liige.
1996−2006   
Ajakirja Folia Cryptogamica Estonica peatoimetaja.
1994−1999   
Eesti Mükoloogia Ühingu (ELUS-i alluvuses) esimees.

Kvalifikatsioon

Teaduskraadid
Urmas Kõljalg, Doctor's Degree, 1996, (sup) Tuomo Niemelä; Erast Parmasto, Tomentella (Basidiomycota) and related genera in Temperate Eurasia (Tomentella (Basidiomycota) and related genera in Temperate Eurasia), Helsingi.
 
 
Teaduspreemiad ja tunnustused
2020, Urmas Kõljalg, Eesti Vabariigi teaduspreemia geo- ja bioteaduste alal tööde tsükli „Eluslooduse taksonite kommunikatsiooni uus paradigma: Linné süsteemi täiendus“ eest.
2003, Urmas Kõljalg, Carl ja Tecla Lambergi nimeline külalisprofessuur Göteborgi Ülikoolis (2003/2004 akadeemiline aasta).
1997, Urmas Kõljalg, Eesti Vabariigi teaduspreemia 1996. aasta parima teadustöö eest geo- ja bioteaduste valdkonnas
 
 
Teadustöö põhisuunad
ETIS VALDKOND: 1. Bio- ja keskkonnateadused; 1.2. Mikrobioloogia; CERCS VALDKOND: B230 Mikrobioloogia, bakterioloogia, viroloogia, mükoloogia ; TÄPSUSTUS: Seente ja taimejuurte vahelise kooselu uurimine ning interaktsioonid, seente süstemaatika ja evolutsioon.
ETIS VALDKOND: 4. Loodusteadused ja tehnika; 4.6. Arvutiteadused; CERCS VALDKOND: P175 Informaatika, süsteemiteooria; TÄPSUSTUS: Eluslooduse andmehalduse ja -analüüsi tehnoloogiate arendustöö.
ETIS VALDKOND: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; TÄPSUSTUS: Seente ja taimejuurte vahelise sümbioosi (mükoriisa) uurimine
ETIS VALDKOND: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; TÄPSUSTUS: Seente sugukonna Thelephoraceae (Fungi, Hymenomycetes) süstemaatika
ETIS VALDKOND: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia
 
 
Lisainfo
Ph.D.
Helsingi Ülikool, 1996

Jooksvad projektid

Lõppenud projektid

Juhendamisel väitekirjad

Juhendatud väitekirjad

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2022
Bahram, Mohammad; Espenberg, Mikk; Pärn, Jaan; Lehtovirta-Morley, Laura; Anslan, Sten; Kasak, Kuno; Kõljalg, Urmas; Liira, Jaan; Maddison, Martin; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Pärtel, Meelis; Soosaar, Kaido; Zobel, Martin; Hildebrand, Falk; Tedersoo, Leho; Mander, Ülo (2022). Structure and function of the soil microbiome underlying N2O emissions from global wetlands. Nature Communications, 13, 1430. DOI: 10.1038/s41467-022-29161-3.
1.1.
2022
Runnel, Kadri; Abarenkov, Kessy; Copot, Ovidiu; Mikryukov, Vladimir; Kõljalg, Urmas; Saar, Irja; Tedersoo, Leho (2022). DNA barcoding of fungal specimens using PacBio long-read high-throughput sequencing. Molecular Ecology Resources [ilmumas].
1.1.
2021
Tamme, Riin; Pärtel, Meelis; Kõljalg, Urmas; Laanisto, Lauri; Liira, Jaan; Mander, Ülo; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Ostonen, Ivika; Tedersoo, Leho; Zobel, Martin (2021). Global macroecology of nitrogen‐fixing plants. Global Ecology and Biogeography, 30, 514−526. DOI: 10.1111/geb.13236.
1.1.
2021
Leho Tedersoo, Vladimir Mikryukov, Sten Anslan, Mohammad Bahram, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aída‑M. Vasco‑Palacios, Alessandro Saitta, Alexandre Antonelli, Andrea C. Rinaldi, Annemieke Verbeken, Bobby P. Sulistyo, Boris Tamgnoue, Brendan Furneaux, Camila Duarte Ritter, Casper Nyamukondiwa, Cathy Sharp, César Marín, D. Q. Dai, Daniyal Gohar, Dipon Sharmah, Elisabeth Machteld Biersma, Erin K. Cameron, Eske De Crop, Eveli Otsing, Evgeny A. Davydov, Felipe E. Albornoz, Francis Q. Brearley, Franz Buegger, Genevieve Gates, Geofrey Zahn, Gregory Bonito, Indrek Hiiesalu, Inga Hiiesalu, Irma Zettur, Isabel C. Barrio, Jaan Pärn, Jacob Heilmann‑Clausen, Jelena Ankuda, John Y. Kupagme, Joosep Sarapuu, Jose G. Maciá‑Vicente, Joseph Djeugap Fovo, József Geml, Juha M. Alatalo, Julieta Alvarez‑Manjarrez, Jutamart Monkai, Kadri Põldmaa, Kadri Runnel, Kalev Adamson, Kari A. Bråthen, Karin Pritsch, Kassim I. Tchan, Kęstutis Armolaitis, Kevin D. Hyde, Kevin K. Newsham, Kristel Panksep, Lateef A. Adebola, Louis J. Lamit, Malka Saba, Marcela E. da Silva Cáceres, Maria Tuomi, Marieka Gryzenhout, Marijn Bauters, Miklós Bálint, Nalin Wijayawardene, Niloufar Hagh‑Doust, Nourou S. Yorou, Olavi Kurina, Peter E. Mortimer, Peter Meidl, R. Henrik Nilsson, Rasmus Puusepp, Rebeca Casique‑Valdés, Rein Drenkhan, Roberto Garibay‑Orijel, Roberto Godoy, Saleh Alfarraj, Saleh Rahimlou, Sergei Põlme, Sergey V. Dudov, Sunil Mundra, Talaat Ahmed, Tarquin Netherway, Terry W. Henkel, Tomas Roslinm, Vladimir E. Fedosov, Vladimir G. Onipchenko, W. A. Erandi Yasanthika, Young Woon Lim, Meike Piepenbring; Darta Klavina, Urmas Kõljalg, Kessy Abarenkov (2021). The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity, 111, 573−588. DOI: 10.1007/s13225-021-00493-7.
1.1.
2021
Svantesson, S.; Kõljalg, U.; Wurzbacher, C.; Saar, I.; Larsson, K.-H.; Larsson, E. (2021). Polyozellus vs. Pseudotomentella: generic delimitation with a multi-gene dataset. Fungal Systematics and Evolution, 8, 143−154. DOI: 10.3114/fuse.2021.08.11.
1.1.
2021
Savchenko, Anton; Zamora, Juan Carlos; Shirouzu, Takashi; Spirin, Viacheslav; Malysheva, Vera; Kõljalg, Urmas; Miettinen, Otto; (2021). Revision of Cerinomyces (Dacrymycetes, Basidiomycota) with notes on morphologically and historically related taxa. Studies in Mycology, 99 (100117), 1−72. DOI: 10.1016/j.simyco.2021.100117.
1.1.
2020
Kõljalg, Urmas; Nilsson, Henrik R.; Schigel, Dmitry; Tedersoo, Leho; Larsson, Karl-Henrik; May, Tom W.; Taylor, Andy F. S.; Jeppesen, Thomas Stjernegaard; Frøslev, Tobias Guldberg; Lindahl, Björn D.; Põldmaa, Kadri; Saar, Irja; Suija, Ave; Savchenko, Anton; Yatsiuk, Iryna; Adojaan, Kristjan; Ivanov, Filipp; Piirmann, Timo; Pöhönen, Raivo; Zirk, Allan ... Abarenkov, Kessy (2020). The Taxon Hypothesis Paradigm—On the Unambiguous Detection and Communication of Taxa. Microorganisms, 8 (12), 1910. DOI: 10.3390/microorganisms8121910.
1.1.
2020
Tedersoo, Leho; Anslan, Sten; Bahram, Mohammad; Drenkhan, Rein; Pritsch, Karin; Buegger, Franz; Padari, Allar; Hagh-Doust, Niloufar; Mikryukov, Vladimir; Gohar, Daniyal; Amiri, Rasekh; Hiiesalu, Indrek; Lutter, Reimo; Rosenvald, Raul; Rähn, Elisabeth; Adamson, Kalev; Drenkhan, Tiia; Tullus, Hardi; Jürimaa, Katrin; Sibul, Ivar ... Abarenkov, Kessy (2020). Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe. Frontiers in Microbiology, 11, ARTN 1953. DOI: 10.3389/fmicb.2020.01953.
1.1.
2020
Schigel, Dmitry; Andersson, Anders; Bissett, Andrew; Finstad, Anders; Fossøy, Frode; Grosjean, Marie; Hope, Michael; Kõljalg, Urmas; Lundin, Daniel; Nilsson, R. Henrik; Prager, Maria; Jeppesen, Thomas; Svenningsen, Cecilie (2020). Mapping and Publishing Sequence-Derived Data through Biodiversity Data Platforms. Biodiversity Information Science and Standards, 4. DOI: 10.3897/biss.4.59212.
1.1.
2019
Nilsson, R.H.; Larsson, K-H.; Taylor, A.F.S.; Bengtsson-Palme, J.; Jeppesen, T.S.; Schigel, D.; Kennedy, P.; Picard, K.; Glöckner, F.O.; Tedersoo, L.; Saar, I.; Kõljalg, U.; Abarenkov, K. (2019). The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acid Research, 47 (Database issue), D259−D264. DOI: 10.1093/nar/gky1022.
1.1.
2019
Saar, I.; Oja, J.; Põldmaa, K.; Pärtel, K.; Zettur, I.; Kõljalg, U. (2019). Red List of Estonian Fungi - 2019 update. Folia Cryptogamica Estonica, 56, 117−126. DOI: 10.12697/fce.2019.56.12.
1.1.
2019
Syantesson, Sten; Larsson, Karl-Henrik; Kõljalg, Urmas; May, Tom W.; Cangrenu, Patrik; Nilsson, R. Henrik; Larsson, Ellen (2019). Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) - a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys, 50, 1−77. DOI: 10.3897/mycokeys.50.32432.
1.1.
2019
Larsson, Karl-Henrik; Svantesson, Sten; Miscevic, Diana; Kõljalg, Urmas; Larsson, Ellen (2019). Reassessment of the generic limits for Hydnellum and Sarcodon (Thelephorales, Basidiomycota). MycoKeys, 54, 31−47. DOI: 10.3897/mycokeys.54.35386.
1.1.
2019
Põldmaa, Kadri; Spirin, Viacheslav; Miettinen, Otto; Runnel, Kadri; Savchenko, Anton; Pärtel, Kadri; Kõljalg, Urmas (2019). Fungi from Soomaa National Park: rarities and species new for Estonia. Folia Cryptogamica Estonica, 56, 127−136. DOI: 10.12697/fce.2019.56.13.
1.1.
2018
Nilsson, R. Henrik; Taylor, Andy F. S.; Adams, Rachel I.; Baschien, Christiane; Bengtsson-Palme, Johan; Cangren, Patrik; Coleine, Claudia; Daniel, Heide-Marie; Glassman, Sydney I.; Hirooka, Yuuri; Irinyi, Laszlo; Irsenaite, Reda; Martin-Sanchez, Pedro M.; Meyer, Wieland; Oh, Seung-Yoon; Sampaio, Jose Paulo; Seifert, Keith A.; Sklenar, Frantisek; Stubbe, Dirk; Suh, Sung-Oui ... Abarenkov, Kessy (2018). Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys, 28, 65−82. DOI: 10.3897/mycokeys.28.20887.
1.1.
2018
Zamora, Juan Carlos; Svensson, Mans; Kirschner, Roland; Olariaga, Ibai; Ryman, Svengunnar; Alberto Parra, Luis; Geml, Jozsef; Rosling, Anna; Adamcik, Slavomir; Ahti, Teuvo; Aime, M. Catherine; Ainsworth, A. Martyn; Albert, Laszlo; Alberto, Edgardo; Garcia, Alberto Altes; Ageev, Dmitry; Agerer, Reinhard; Aguirre-Hudson, Begona; Ammirati, Joe; Andersson, Harry ... Ekmani, Stefan (2018). Considerations and consequences of allowing DNA sequence data as types of fungal taxa. IMA Fungus, 9 (1), 167−175. DOI: 10.5598/imafungus.2018.09.01.10.
1.1.
2018
Wetzel, FT.; Bingham, HC.; Groom, Q.; Haase, P.; Kõljalg, U.; Kuhlmann, M.; Martin, CS.; Penev, L.; Robertson, T.; Saarenmaa, H.; Schmeller, DS.; Stoll, S.; Tonkin, JD.; Häuser, CL. (2018). Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe. Biological Conservation, 221, 78−85. DOI: 10.1016/j.biocon.2017.12.024.
6.3.
2018
Voitk, A.; Saar, I.; Trudell, S.; Spirin, V.; Beug, M.; Kõljalg, U. (2018). Maria’s mushroom. Omphalina, IX (4), 9−18.
1.1.
2017
Oja, Jane; Vahtra, Johanna; Bahram, Mohammad; Kohout, Petr; Kull, Tiiu; Rannap, Riinu; Kõljalg, Urmas; Tedersoo, Leho (2017). Local-scale spatial structure and community composition of orchid mycorrhizal fungi in semi-natural grasslands. Mycorrhiza, 27 (4), 355−367. DOI: 10.1007/s00572-016-0755-7.
1.1.
2017
Grube, Martin; Gaya, Ester; Kauserud, Havard; Smith, Adrian M.; Avery, Simon V.; Fernstad, Sara J.; Muggia, Lucia; Martin, Michael D.; Eivindsen, Tove; Koljalg, Urmas; Bendiksby, Mika (2017). The next generation fungal diversity researcher. Fungal Biology Reviews, 31 (3), 124−130.10.1016/j.fbr.2017.02.001.
1.1.
2017
Johansson V.; Bahram, M; Tedersoo, L.; Kõljalg, U.; Eriksson O. (2017). Specificity of fungal associations of Pyroleae and Monotropa hypopitys during germination and seedling development. Molecular Ecology, 26 (9), 2591−2604. DOI: 10.1111/mec.14050.
1.1.
2017
Voitk, A.; Saar, I.; Trudell, S.; Spirin, V.; Beug, M.; Kõljalg, U. (2017). Polyozellus multiplex (Thelephorales) is a species complex containing four new species. Mycologia, 109, 6, 975−992.10.1080/00275514.2017.1416246.
3.1.
2017
Põlme, S.; Bahram, M.; Kõljalg, U.; Tedersoo, L. (2017). Biogeography and specificity of ectomycorrhizal fungi of Coccoloba uvifera. Ecological Studies, 230, 345−359. DOI: 10.1007/978-3-319-56363-3_16.
1.1.
2016
Abarenkov, K.; Adams, R.I.; Irinyi, L.; Agan, A.; Ambrosio, E.; Antonelli, A.; Bahram, M.; Bengtsson-Palme, J.; Bok, G.; Cangren, P.; Coimbra, V.; Coleine, C.; Gustafsson, C.; He, J.; Hofmann, T.; Kristiansson, E.; Larsson, E.; Larsson, T.; Liu, Y.; Martinsson, S. ... Nilsson, R.H. (2016). Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys, 16, 1−15. DOI: 10.3897/mycokeys.16.10000.
1.1.
2016
Hibbett D, Abarenkov K, Kõljalg U, Öpik M, Chai B, Cole JR, Wang Q, Crous PW, Robert VARG, Helgason T, Herr J, Kirk P, Lueschow S, O’Donnell K, Nilsson H, Oono R, Schoch CL, Smyth C, Walker D, Porras-Alfaro A, Taylor JW, Geiser DM. (2016). Sequence-based classification and identification of Fungi. Mycologia, 108 (6), 1049−1068. DOI: 10.3852/16-130.
1.1.
2016
Põlme, Sergei; Öpik, Maarja; Moora, Mari; Zobel, Martin; Kohout, Petr; Oja, Jane; Kõljalg, Urmas; Tedersoo, Leho (2016). Arbuscular mycorrhizal fungi associating with roots of Alnus and Rubus in Europe and the Middle East. Fungal Ecology, 24A, 27−34.
1.1.
2016
Tedersoo, L., Liiv, I., Kivistik, P.A., Anslan, S., Kõljalg, U., Bahram, M. (2016). Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruitbody and ectomycorrhiza specimens. MycoKeys, 13, 1−20. DOI: 10.3897/mycokeys.13.8140.
6.8.
2016
Kõljalg, U.; Tedersoo, L.; Nilsson, R.H.; Abarenkov, K. (2016). Digital identifiers for fungal species. Science, 352, 1182−1183. DOI: 10.1126/science.aaf7115.
1.1.
2015
Oja, J.; Kohout, P.; Tedersoo, L.; Kull, T.; Kõljalg, U. (2015). Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing. New Phytologist, 205 (4), 1608−1618. DOI: 10.1111/nph.13223.
1.1.
2015
Nilsson, R.H.; Tedersoo, L.; Ryberg, M.; Kristiansson, E.; Hartmann, M.; Unterseher, M.; Porter, T.M.; Bengtsson-Palme, J.; Walker, D.M.; De Sousa, F.; Gamper, H.A.; Larsson, E.; Larsson, K.-H.; Kõljalg, U.; Edgar, R.C.; Abarenkov, K. (2015). A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts. Microbes and Environments, 30 (2), 145−150. DOI: 10.1264%2Fjsme2.ME14121.
1.1.
2015
Tedersoo, Leho; Anslan, Sten; Bahram, Mohammad; Põlme, Sergei; Riit, Taavi; Liiv, Ingrid; Kõljalg, Urmas; Kisand, Veljo; Nilsson, R. Henrik; Hildebrand, Falk; Bork, Peer; Abarenkov, Kessy (2015). Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys, 10, 1−43. DOI: 10.3897/mycokeys.10.4852.
6.8.
2015
Tedersoo, Leho; Ramirez, Kelly S.; Nilsson, R Henrik; Kaljuvee, Aivi; Kõljalg, Urmas; Abarenkov, Kessy (2015). Standardizing metadata and taxonomic identification in metabarcoding studies. GigaScience, 4 (34), 1−4. DOI: 10.1186/s13742-015-0074-5.
6.8.
2015
Tedersoo, L.; Bahram, M.; Põlme, S.; Anslan, S.; Riit, T.; Kõljalg, U.; Nilsson, R.H.; Hildebrand, F.; Abvarenkov, K. (2015). Response to comment on “Global diversity and geography of soil fungi”: Analytical biases in microbial diversity studies. Science, 349 (6251), 936−936. DOI: 10.1126/science.aaa5594.
1.1.
2014
Tedersoo, L.; Bahram, M.; Põlme, S.; Kõljalg, U.; Yorou, N.S.; Wijesundera, R.; Villarreal-Ruiz, L.; Vasco-Palacios, A.; Quang Thu, P.; Suija, A.; Smith, M.E.; Sharp, C.; Saluveer, E.; Saitta, A.; Ratkowsky, D.; Pritsch, K.; Riit, T.; Põldmaa, K.; Piepenbring, M.; Phosri, C. ... Abarenkov, K. (2014). Global diversity and geography of soil fungi. Science, 346 (6213), 1078. DOI: 10.1126/science.1256688.
1.1.
2014
Nilsson, R. Henrik; Hyde, Kevin D.; Pawłowska, Julia; Ryberg, Martin; Tedersoo, Leho; Aas, Anders Bjørnsgard; Alias, Siti A.; Alves, Artur; Anderson, Cajsa Lisa; Antonelli, Alexandre; Arnold, A. Elizabeth; Bahnmann, Barbara; Bahram, Mohammad; Bengtsson-Palme, Johan; Berlin, Anna; Branco, Sara; Chomnunti, Putarak; Dissanayake, Asha; Drenkhan, Rein; Friberg, Hanna ... Abarenkov, Kessy (2014). Improving ITS sequence data for identification of plant pathogenic fungi. Fungal Diversity, 67 (1), 11−19. DOI: 10.1007/s13225-014-0291-8.
1.1.
2014
Tedersoo, L.; Bahram, M.; Ryberg, M.; Otsing, E.; Kõljalg, U.; Abarenkov, K. (2014). Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetics analyses. Molecular Ecology, 23 (16), 4168−4183. DOI: 10.1111/mec.12849.
1.1.
2014
Schoch, C.L.; Robbertse, B.; Robert, V.; Vu, D.; Cardinali, G.; Irinyi, L.; Kõljalg, U.; Tedersoo, L.; Federnse, S. (2014). Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database, bau061. DOI: 10.1093/database/bau061.
1.1.
2014
Tedersoo, L.; Harend, H.; Buegger, F.; Pritsch, K.; Saar, I.; Kõljalg, U. (2014). Stable isotope analysis, field observations and synthesis experiments suggest that Odontia is a non-mycorrhizal sister genus of Tomentella and Thelephora. Fungal Ecology, 11, 80−90. DOI: 10.1016/j.funeco.2014.04.006.
1.1.
2014
Põlme, Sergei; Bahram, Mohammad; Kõljalg, Urmas; Tedersoo, Leho (2014). Global biogeography of Alnus associated Frankia actonibacteria. New Phytologist, 204 (4), 979−988. DOI: 10.1111/nph.12962.
1.1.
2013
Bahram, M.; Kõljalg, U.; Courty, P.; Diédhiou, AG.; Kjøller, R.; Põlme, S.; Ryberg, M.; Veldre, V.; Tedersoo, L. (2013). The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales. Journal of Ecology, 101 (5), 1335−1344. DOI: 10.1111/1365-2745.12120.
1.1.
2013
Kõljalg, Urmas; Nilsson, Henrik; Abarenkov, Kessy; Tedersoo, Leho; Taylor, Andy; Bahram, Mohammad; Bates, Scott; Bruns, Thomas; Bengtsson-Palme, Johan; O'Callaghan, Tony; Douglas, Brian; Drenkhan, Tiia; Eberhardt, Ursula; Dueñas, Margarita; Grebenc, Tine; Griffith, Gareth; Hartmann, Martin; Kirk, Paul; Kohout, Petr; Larsson, Ellen ... Larsson, Karl-Henrik (2013). Towards a unified paradigm for sequence-based identification of Fungi. Molecular Ecology, 22 (21), 5271−5277. DOI: 10.1111/mec.12481.
1.1.
2013
Veldre, V.; Abarenkov, K.; Bahram, M.; Martos, F.; Selosse, M.-A.; Tamm, H.; Kõljalg, U.; Tedersoo, L. (2013). Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences. Fungal Ecology, 6 (4), 256−268. DOI: 10.1016/j.funeco.2013.03.004.
1.1.
2013
Põlme, S.; Bahram, M.; Yamanaka, T.; Nara, K.; Dai, Y. C.; Grebenc, T.; Kraigher, H.; Toivonen, M.; Wang, P.; Matsuda, Y.; Naadel, T.; Kennedy, P.; Kõljalg, U.; Tedersoo, L. (2013). Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale. New Phytologist, 198 (4), 1239−1249. DOI: 10.1111/nph.12170.
1.1.
2013
Lindahl, Björn D.; Nilsson, R. Henrik; Tedersoo, Leho; Abarenkov, Kessy; Carlsen, Tor; Kjøller, Rasmus; Kõljalg, Urmas; Pennanen, Taina; Rosendahl, Søren; Stenlid, Jan; Kauserud, Håvard (2013). Fungal community analysis by high-throughput sequencing of amplified markers – a user's guide. New Phytologist, 199 (1), 288−299. DOI: 10.1111/nph.12243.
1.1.
2013
Zhou, Li-Wei; Kõljalg, Urmas (2013). A new species of Lenzitopsis (Thelephorales, Basidiomycota) and its phylogenetic placement. Mycoscience, 54 (1), 87−92.10.1016/j.myc.2012.06.002.
1.1.
2012
Phosri, Cherdchai; Põlme, Sergei; Taylor, Andy F. S.; Kõljalg, Urmas; Suwannasai, Nuttika; Tedersoo, Leho (2012). Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21 (9), 2287−2298. DOI: 10.1007/s10531-012-0250-1.
1.1.
2012
Tedersoo, L.; Naadel, T.; Bahram, M.; Pritsch, K.; Buegger, F.; Leal, M.; Kõljalg, U.; Põldmaa, K. (2012). Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest. New Phytologist, 195 (4), 832−843. DOI: 10.1111/j.1469-8137.2012.04217.x.
1.1.
2012
Tedersoo, L.; Bahram, M.; Toots, M.; Diédhiou, A.G.; Henkel, T.W.; Kjøller, R.; Morris, M.H.; Nara, K.; Nouhra, E.; Peay, K.G.; Põlme, S.; Ryberg, M.; Smith, M.E.; Kõljalg, U. (2012). Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Molecular Ecology, 21 (17), 4160−4170. DOI: 10.1111/j.1365-294X.2012.05602.x.
1.1.
2012
Schoch, C.L.; Seifert, K.A.; Huhndorf, S.; Robert, V.; Spouge, J.L.; Levesque, C.A.; Chen, W.; Bolchacova, E.; Voigt, K.; Crous, P.W.; Miller, A.N.; Wingfield, M.J.; Kõljalg, U.; Tedersoo, L. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, 109 (16), 6241−6246. DOI: 10.1073/pnas.1117018109.
1.1.
2012
Bahram M, Kõljalg U, Kohout P, Mirshahvaladi S, Tedersoo L. (2012). Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa. Mycorrhiza, DOI: 10.1007/s00572-012-0445-z.
1.1.
2012
Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Zarre, Shahin; Tedersoo, Leho (2012). Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran. New Phytologist, 193 (2), 465−473.
1.2.
2012
Nilsson, R.H.; Tedersoo, L.; Abarenkov, K.; Ryberg, M.; Kristiansson, E.; Hartmann, M.; Schoch, C.L.; Nylander, J.A.A.; Bergsten, J.; Porter, T.M.; Jumpponen, A.; Vaishampayan, P.; Ovaskainen, O.; Hallenberg, N.; Bengtsson-Palme, J.; Eriksson, K.M.; Larsson, K.-H.; Larsson, E.; Kõljalg, U. (2012). Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences. MycoKeys, 4, 37−62. DOI: 10.3897/mycokeys.4.3606.
6.6.
2012
Helm, A; Zobel, M; Pärtel, M; Trass, H; Kõljalg, U. (2012). Seaduse musklid või avalik huvi. .
1.1.
2011
Tedersoo, L.; Bahram, M.; Jairus, T.; Bechem, E.; Chinoya, S.; Mpumba, R.; Leal, M.l; Randrianjohany, E.; Razafimandimbison, S.; Sadam, A.; Naadel, T.; Kõljalg, U. (2011). Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar. Molecular Ecology, 20 (14), 3071−3080.
1.1.
2011
Nilsson, R.H.; Tedersoo, L.; Lindahl, B.; Kjoller, R.; Carlsen, T.; Quince, C.; Abarenkov, K.; Pennanen, T.; Stenlid, J.; Bruns, T.; Larsson, K.-H.; Kõljalg, U.; Kauserud, H. (2011). Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytologist, 191 (2), 314−318.
1.1.
2011
Bahram, M; Põlme, S; Kõljalg, U; Tedersoo, L (2011). A single European aspen (Populus tremula) tree individual may potentially harbour dozens of Cenococcum geophilum ITS genotypes and hundreds of species of ectomycorrhizal fungi. FEMS Microbiology Ecology, 75 (2), 313−320. DOI: 10.1111/j.1574-6941.2010.01000.x.
1.1.
2011
Nilsson, RH; Veldre, V; Wang, Z; Eckart, M; Branco, S; Hartmann, M; Quince, C; Godhe, A; Bertrand, Y; Alfredsson, JF; Larsson, K-H; Kõljalg, U; Abarenkov, K. (2011). A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation. Mycoscience, 52 (4), 278−282. DOI: 10.1007/s10267-010-0086-z.
1.1.
2011
Tedersoo, L; Abarenkov, K; Nilsson, RH; Schüβler, A; Grelet, G-A; Kohout, P; Oja, J; Bonito, GM; Veldre, V; Jairus, T; Ryberg, M; Larsson, K-H; Kõljalg, U. (2011). Tidying up International Nucleotide Sequence Databases: ecological, geographical and sequence quality annotation of ITS sequences of mycorrhizal fungi. PLoS ONE, 6 (9), e24940. DOI: 10.1371/journal.pone.0024940.
3.2.
2011
Saar, I.; Suija, A.; Kõljalg, U. (2011). Uutest seeneliikidest Eestis. Kull, T.; Liira, J.; Sammul, M. (Toim.). Eesti Looduseuurijate Seltsi aastaraamat (188−195). . Eesti Looduseuurijate Selts.
6.3.
2011
Kõljalg, Urmas; Abarenkov, Kessy (2011). Elurikkuse informaatika. Parmasto, Erast; Laisk, Agu; Kaljo, Dimitri. (Toim.). Teadusmõte Eestis. Elu ja Maateadused (17−26). . Tallinn: Eesti Teaduste Akadeemia: Eesti Teaduste Akadeemia Toimetised.
1.1.
2010
Abarenkov, K; Tedersoo, L; Nilsson, RH; Vellak, K; Saar, I; Veldre, V; Parmasto, E; Prous, M; Aan, A; Ots, M; Kurina, O; Ostonen, I; Jõgeva, J; Halapuu, S; Põldmaa, K; Toots, M; Truu, J; Larsson, K-H; Kõljalg, U (2010). PlutoF – a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evolutionary Bioinformatics, 189−196. DOI: 10.4137/EBO.S6271.
1.1.
2010
Tedersoo, L.; Nilsson, R.H.; Abarenkov, K.; Jairus, T.; Sadam, A.; Saar, I.; Bahram, M.; Bechem, E.; Chuyong, G.; Kõljalg, U. (2010). 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist, 188 (1), 291−301. DOI: 10.1111/j.1469-8137.2010.03373.x.
1.1.
2010
Abarenkov, Kessy; Nilsson, R. Henrik; Larsson, Karl-Henrik; Alexander, Ian J.; Eberhardt, Ursula; Erland, Susanne; Høiland, Klaus; Kjøller, Rasmus; Larsson, Ellen; Pennanen, Taina; Sen, Robin; Taylor, Andy F. S.; Tedersoo, Leho; Ursing, Björn M.; Vrålstad, Trude; Liimatainen, Kare; Peintner, Ursula; Kõljalg, Urmas (2010). The UNITE database for molecular identification of fungi – recent updates and future perspectives. New Phytologist, 186 (2), 281−285. DOI: 10.1111/j.1469-8137.2009.03160.x.
1.1.
2010
Barrett, Craig F.; Freudenstein, John V.; Taylor, D. Lee; Kõljalg, Urmas (2010). Rangewide analysis of fungal associations in the fully mycoheterotrophic Corallorhiza striata complex (Orchidaceae) reveals extreme specificity on ectomycorrhizal Tomentella (Thelephoraceae) across North America. American Journal of Botany, 97 (4), 628−643.10.3732/ajb.0900230.
1.1.
2010
Suvi, T.; Tedersoo, L.; Abarenkov, K.; Beaver, K.; Gerlach, J.; Kõljalg, U. (2010). Mycorrhizal symbionts of Pisonia grandis and P. sechellarum in Seychelles: identification of mycorrhizal fungi and description of new Tomentella species. Mycologia, 102 (3), 522−533. DOI: 10.3852/09-147.
1.1.
2009
Tedersoo, L.; Gates, G.; Dunk, C.; Lebel, T.; May, T.W.; Kõljalg, U.; Jairus, T. (2009). Establishment of ectomycorrhizal fungal community on isolated Nothofagus cunninghamii seedlings regenerating on dead wood in Australian wet temperate forests: does fruit-body type matter. Mycorrhiza, 19 (6), 403−416. DOI: 10.1007/s00572-009-0244-3.
1.1.
2009
Kõljalg, U.; Bernicchia, A.; Saar, I.. (2009). Tomentellopsis pulchella sp. nov. from St. Vitale Pine Forest (Ravenna, Italy). Mycotaxon, 107, 53−60.
1.1.
2009
Saar, I.; Põldmaa, K.; Kõljalg, U. (2009). The phylogeny and taxonomy of genera Cystoderma and Cystodermella (Agaricales) based on nuclear ITS and LSU sequences. Mycological Progress, 8 (1), 59−73. DOI: 10.1007/s11557-008-0578-9.
1.1.
2008
Bidartondo, MI.; Bruns, TD.; Blackwell, M.; Edwards, I.; Taylor, AFS.; Horton, T.; Zhang, N.; Kõljalg, U.; May, G.; Kuyper, TW. (2008). Preserving accuracy in GenBank. Science, 319 (5870), 1616. DOI: 10.1126/science.319.5870.1616a.
1.1.
2008
Vincenot, L.; Tedersoo, L.; Richard, F.; Horcine, H.; Kõljalg, U.; Selosse, MA. (2008). Fungal associates of Pyrola rotundifolia, a mixotrophic Ericaceae, from two Estonian boreal forests. Mycorrhiza, 19 (1), 1−11. DOI: 10.1007/s00572-008-0199-9.
1.1.
2008
Tedersoo, L.; Jairus, T.; Horton, B.M.; Abarenkov, A.; Suvi, T.; Saar, I.; Kõljalg, U. (2008). Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytologist, 180 (2), 479−490. DOI: 10.1111/j.1469-8137.2008.02561.x.
1.1.
2008
Tedersoo, L.; Suvi, T.; Jairus, T.; Kõljalg, U. (2008). Forest microsite effects on community composition of ectomycorrhizal fungi on seedlings of Picea abies and Betula pendula. Environmental Microbiology, 10 (5), 1189−1201. DOI: 10.1111/j.1462-2920.2007.01535.x.
2.2.
2008
Ernits, Enn; Hints, Olle; Hints, Rutt; Isakar, Mare; Kaljo, Dimitri; Kiipus, Merike; Kurina, Olavi; Kõljalg, Urmas; Lõugas, Lembi; Noorhani, Piret; Ots, Mirja; Parmasto, Erast; Pärtel, Meelis; Reier, Ülle; Tamla, Ülle; Toomsalu, Maie; Truu, Jaak; Viikberg, Jüri; Västrik, Ergo-Hart (2008). Eesti humanitaar- ja loodusteaduslikud kogud. Seisund, kasutamine, andmebaasid. Tartu: Tartu Ülikooli Kirjastus.
3.2.
2008
Hints, O.; Kõljalg, U. (2008). Ülevaade loodusteaduslikest kogudest. Parmasto, E., Viikberg, J.. Eesti humanitaar- ja loodusteaduslikud kogud. Seisund, kasutamine, andmebaasid (139−152). . Tartu: Tartu Ülikooli Kirjastus.
3.3.
2008
Abarenkov, Kessy; Kõljalg, Urmas; Parmasto, Erast; Kuslapuu, Aavo (2008). PlutoF 1.0. Veebi-töölaud andmete sisestamiseks, toimetamiseks ja vaatamiseks (vaatlused, kollektsioonid, liigid jt. taksonid, DNA-andmed jm). Kasutusjuhend looduseuurijale. Tartu: Tartu Ülikooli Kirjastus.
1.1.
2007
Teder, T.; Moora, M.; Roosaluste, E.; Zobel, K.; Pärtel, M.; Kõljalg, U.;Zobel, M. (2007). Monitoring of biological diversity: a common-ground approach. Conservation Biology, 21 (2), 313−317.
1.1.
2007
Miettinen, O.; Kõljalg, U. (2007). Amaurodon sumatranus (Thelephorales, Basidiomycota), a new species from Indonesia. Mycotaxon, 100, 51−59.
1.1.
2007
Di Marino, E.; Kõljalg, U.; Agerer, R. (2007). The ectomycorrhizae of Pseudotomentella humicola on Picea abies. Nova Hedwigia, 84, 429−440.
1.1.
2007
Tedersoo, L.; Suvi, T.; Beaver, K.; Kõljalg, U. (2007). Ectomycorrhizal fungi of the Seychelles: diversity patterns and host shifts from the native Vateriopsis seychellarum (Dipterocarpaceae) and Intsia bijuga (Caesalpiniaceae) to the introduced Eucalyptus robusta (Myrtaceae), but not Pinus caribea (Pinaceae). New Phytologist, 175 (2), 321−333.
1.1.
2007
Hibbett, D.S.; Binder, M.; Bischoff, J.F.; Blackwell, M.; Cannon, P.F.; Eriksson, O.E.; Huhndorf, S.; James, T.; Kirk, P.M.; Lücking, R.; Thorsten Lumbusch, H.; Lutzoni, F.; Matheny, P.B.; Mclaughlin, D.J.; Powell, M.J.; Redhead, S.; Schoch, C.L.; Spatafora, J.W.; Stalpers, J.A.; Vilgalys, R. ... Zhang, N. (2007). A higher-level phylogenetic classification of the Fungi. Mycological Research, 111, 509−547.
1.1.
2007
Yorou, N.S.; Kõljalg, U.; Sinsin, B.; Agerer, R. (2007). Studies in African thelephoroid fungi: 1. Tomentella capitata and Tomentella brunneocystidia, two new species from Benin (West Africa) with capitate cystidia. Mycological Progress, 7−18. DOI: 10.1007/s11557-006-0519-4.
1.1.
2007
Tedersoo, L.; Pellet, P.; Kõljalg, U.; Selosse, M.-A. (2007). Parallel evolutionary paths to mycoheterotrophy in understorey Ericaceae and Orchidaceae: ecological evidence for mixotrophy in Pyroleae. Oecologia, 151 (2), 206−217. DOI: 10.1007/s00442-006-0581-2.
1.1.
2006
Tedersoo, L.; Suvi, T.; Larsson, E.; Kõljalg, U. (2006). Diversity and community structure of ectomycorrhizal fungi in a wooded meadow. Mycological Research, 110, 734−748.
1.1.
2006
Nilsson, R.H.; Larsson, K.-H.; Larsson, E.; Kõljalg, U. (2006). Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota). Mycological Research, 110 (12), 1426−1432.
1.2.
2006
Nilsson, R.H.; Ryberg, M.; Kristiansson, E.; Abarenkov, K.; Larsson, K.-H.; Kõljalg, U. (2006). Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS ONE, 1 (1), e59 . DOI: 10.1371/journal.pone.0000059.
3.1.
2006
Starast, M.; Kõljalg, U.; Karp, K.; Vool, E.; Noormets, M.; Paal, T. (2006). Mycorrhizal colonization of half-high blueberry cultivars influenced by cultural practices. In: Lopes da Fonseca, L.; Romero Muñoz, F. (Ed.). Proceedings of the VIII International Symposium on Vaccinium Culture (449−454). . Leuven, Belgium: ISHS. (Acta Horticulturae; 715).
5.2.
2006
Tedersoo, L.; Pellet, P.; Kõljalg, U.; Selosse, M-A. (2006). Mixotrophy in understorey subshrubs: isotopic evidence. Abstracts of IMC8: International Mycological Congress VIII; August 2006; Cairns, Austraalia. Cairns, Austraalia.
1.1.
2005
Koljalg, U.; Larsson, KH.; Abarenkov, K.; Nilsson, RH.; Alexander, IJ.; Eberhardt, U.; Erland, S.; Hoiland, K.; Kjoller, R.; Larsson, E.; Pennanen, T.; Sen, R.; Taylor, AFS.; Tedersoo, L.; Vralstad, T.; Ursing, BM. (2005). UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist, 166 (3), 1063−1068.
1.1.
2004
Larsson, KH.; Larsson, E.; Kõljalg, U. (2004). High phylogenetic diversity among corticioid homobasidiomycetes. Mycological Research, 108, 983−1002.
1.1.
2003
Tedersoo, L.; Koljalg, U.; Hallenberg, N.; Larsson, KH. (2003). Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in a mixed forest. New Phytologist, 159 (1), 153−165.
1.1.
2003
Opik, M.; Moora, M.; Liira, J.; Koljalg, U.; Zobel, M.; Sen, R. (2003). Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils. New Phytologist, 160 (3), 581−593.
3.5.
2003
Zobel, M.; Kõljalg, U.; Mänd, R.; Teder, T.; Zobel, K. (2003). Bioloogilise mitmekesisuse seire - kas me vajame üldist süsteemi? Kaasaegse ökoloogia probleemid (Eesti IX Ökoloogiakonverentsi lühiartiklid, Tartu, 11-12. aprill, 2003). Toim. Frey, T. Tartu: Tartu Ülikooli Kirjastus, 351−355.
1.2.
2002
Kõljalg, U.; Tammi, H.; Timonen, S.; Agerer, R.; Sen, R. (2002). ITS rDNA sequence-based positioning of Pink-type ectomycorrhizas and Tomentellopsis species from boreal and temperate forests. Mycological Progress, 1 (1), 81−92.
1.3.
2002
Kõljalg, U. (2002). Kirjatükk Eesti Rahvusliku Loodusmuuseumi vajalikkusest. Akadeemia, 8, 1681−1689.
1.2.
2001
Kõljalg, U.; Dunstan, W. (2001). Pseudotomentella larsenii sp. nov. (Thelephorales), a common ectomycorrhiza former in dry eucalypt woodland and forests of Western Australia. Harvard Papers in Botany, 6 (1), 123−130.
3.2.
2001
Kõljalg, U.; Jakucs, E; Boka, K.; Agerer, R. (2001). Three ectomycorrhiza with cystidia formed by different Tomentella species as revealed by rDNA ITS sequences and anatomical characteristics. In: Folia cryptogamica estonica (27−39).. Tartu: Estonian Naturalists' Society.
1.1.
2000
Koljalg, U.; Dahlberg, A.; Taylor, AFS.; Larsson, E.; Hallenberg, N.; Stenlid, J.; Larsson, KH.; Fransson, PM.; Jonsson, L. (2000). Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests. Molecular Ecology, 9 (12), 1985−1996.
1.2.
2000
Kõljalg, U.; Renvall, P (2000). Hydnellum gracilipes ­ a link between stipitate and resupinate Hymenomycetes. Karstenia, 40, 71−77.
3.2.
2000
Kõljalg, U. (2000). Kas mükoloogial on tulevikku? Engelbrecht, J.; Ergma, E. (Toim.). Noored teaduses (20−23).. Tallinn: Eesti Teaduste Akadeemia Kirjastus.
6.2.
2000
Alamäe, T.; Kull, K.; Kõljalg, U.; Masso, R.; Ustav, M. (2000). Biologija dlja gimnazii, 2 tšast. Eesti Loodusfoto.
6.2.
2000
Alamäe, T.; Kull, K.; Kõljalg, U.; Masso, R.; Ustav, M. (2000). Bioloogia gümnaasiumile 2. osa. Hein, K. (Toim.). Bioloogia gümnaasiumile 2. osa (35−50). . Tartu: Eesti Loodusfoto.
1.1.
1999
Poldmaa, K.; Larsson, E.; Koljalg, U. (1999). Phylogenetic relationships in Hypomyces and allied genera, with emphasis on species growing on wood-decaying homobasidiomycetes. Canadian Journal of Botany-Revue Canadienne de Botanique, 77 (12), 1756−1768.
3.2.
1999
Salkinoja-Salonen, MS.; Andersson, M.; Mikkola, R.; Paananen, A.; Peltola, J.; Mussalo-Rauhamaa, H.; Vuorio, R.; Saris, N-E.; Grigorjev, P.; Helin, J.; Kõljalg, U.; Timonen, T. (1999). Toxigenic microbes in indoor environment: identification, structure and biological effects of the aerosolizing toxins. In: Johanning, E. (Ed.). Bioaerosols, Fungi & Mycotoxins: Health Effects, Assessment, Prevention and Control (359−374).. Albany New York, USA: Eastern New York Occupational and Environmental Health Center.
5.2.
1999
Kõljalg, U. (1999). Molecular phylogeny of Thelephorales. 25 Years of Mycology in Tübingen. Book of abstracts. University of Tübingen, 16−17.
3.2.
1998
Kõljalg, U.; Larsson, E. (1998). Pseudotomentella ochracea sp. nov., based on morphological and molecular data. In: Kõljalg, U.; Vaasma, M. (Ed.). Taxonomy and phylogeny of homobasidomycetes : papers dedicated to Elmar E. Leppik and Erast Parmasto (53−56). . Tartu. (Folia cryptogamica Estonica; 33).
4.2.
1998
Kõljalg, U.; Vaasma, M. (Eds.) (1998). Taxonomy and phylogeny of Homobasidiomycetes. Tartu: Estonian Naturalists' Society.
1.1.
1997
Koljalg, U.; Ryvarden, L. (1997). A new species of Amaurodon (Basidiomycota, Aphyllophorales). Mycotaxon, 65, 107−111.
1.1.
1997
Andersson, MA.; Nikulin, M.; Koljalg, U.; Rainey, F.; Reijula, K.; Hintikka, EL.; SalkinojaSalonen, M. (1997). Bacteria, molds, and toxins in water-damaged building materials. Applied and Environmental Microbiology, 63 (2), 387−393.
1.2.
1996
Langer, E.; Hallenberg, N.; Knudsen, H.; Kõljalg, U.; Langer, G.; Larsson, K.-H.; Oberwinkler, F.; Parmasto, E.; Ryvarden, L.; Vesterholt, J. (1996). Proposal to reject the names Xylodon and Schizopora in favour of Hyphodontia, nom. cons. (Fungi, Corticiaceae). Taxon, 45, 685−686.
2.2.
1996
Kõljalg, U. (1996). Tomentella and related genera in Temperate Eurasia. Oslo: Fungiflora.
1.1.
1992
Kõljalg, U. (1992). Mycorrhiza formed by basidiospores of Tomentella crinalis on Pinus sylvestris. Mycological Research, 96, 215−220.
1.2.
1992
Kõljalg, U.; Mukhamedshin, R. (1992). Tomentelloid fungi in the Caucasus. Mikol. I fitopat, 26 (1), 20−22.
3.2.
1989
Kõljalg, U. (1989). Tomentelloid fungi new for the Soviet Union. In: Folia cryptogamica estonica (123−23).. Tartu: Estonian Naturalists' Society.
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  • Found 37 results
ProgramTypeNumberNameProject startProject endPrincipal investigatorInstitutionFinancing
EMPEMP265Biodiversity in the dark: High-throughput sequence analyses of arctic fungal communities (BioFun)03.09.201331.08.2016Leho TedersooUniversity of Tartu, Faculty of Science and Technology (old)270 000,00 EUR
MUUSP2RT14010DataCite Estonia01.01.201401.03.2015Liisi LembinenUniversity of Tartu; University of Tartu, Tartu University Library247 117,00 EUR
MUUSBGOM07196Training program for the Estonian curators working with natural history collections (6-9 Nov 2007, Swedish Natural History Museum).01.11.200725.11.2007Urmas KõljalgUniversity of Tartu5 560,31 EUR
MUUSP6LM20374T (2014-2020.4.01.20-0283)Estonia´s Participation in the Distributed Systems of Scientific Collections01.07.202030.06.2023Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden698 725,00 EUR
MUULLTOM21327Assessment of threat status of fungal species in Estonia 202128.05.202122.11.2021Irja SaarUniversity of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences26 282,00 EUR
MUUVBGBO04012Identification of ectomycorrhizal fungi in Nordic forests.01.01.200431.12.2006Urmas KõljalgUniversity of Tartu23 827,48 EUR
ETFETF8235Coevolution of selected taxa of ectomycorrhizal fungi and their plant hosts01.01.201031.12.2013Urmas KõljalgUniversity of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University67 492,28 EUR
1.2.3.4.MP6LM21171R (101007492)Biodiversity Community Integrated Knowledge Library01.05.202130.04.2024Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden196 068,75 EUR
1.2.3.4.MLTAT19389R EOSC-Nordic01.09.201931.08.2022Ilja LivensonUniversity of Tartu, Faculty of Science and Technology, Institute of Computer Science508 750,00 EUR
MUUMP1LM12220REU-BON - Building the European Biodiversity Observation Network01.12.201231.05.2017Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden, Museums of Tartu University, Museum of Nature221 080,00 EUR
TKSLTOM16131T (TK131)Ecology of global change: natural and managed ecosystems (TK131)01.01.201601.03.2023Martin ZobelUniversity of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences3 198 027,47 EUR
1.2.3.4.MP6LM20156R (871043)Distributed System of Scientific Collections - Preparatory Phase Project01.02.202031.01.2023Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden, Museums of Tartu University, Museum of Nature70 749,00 EUR
HLKHLK04-16Herbaarium (TAA(M)*) seente DNA taksonoomia ja ökoloogia varamuna01.01.200431.12.2008Bellis KullmanEstonian University of Life Sciences, Institute of Agricultural and Environmental Sciences76 203,51 EUR
MUULP1LM15106Analyses of the monitoring schema of protected fungal taxa27.07.201515.11.2015Urmas KõljalgUniversity of Tartu; University of Tartu, University of Tartu Natural History Museum and Botanical Garden3 240,00 EUR
SFSF0182536As03Taxonomy, molecular phylogenetic and ecological studies of basidio- and ascomycetes (including lichenized fungi)01.01.200331.12.2007Urmas KõljalgUniversity of Tartu, Faculty of Biology and Geography283 256,43 EUR
SFSF_0182536As03Systematics and molecular phylogenetic studies of selected taxa of basidio- and ascomycetes (including lichenized fungi), and autecology of fungal taxa important in agriculture.01.01.200331.12.2007Urmas KõljalgUniversity of Tartu, Faculty of Biology and Geography0,00 EUR
ETFETF8583Diversity of multitaxon assemblages associated with fruitbodies of basidiomycetes01.01.201131.12.2014Kadri PõldmaaUniversity of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University40 800,00 EUR
ETFETF6606Biogeography and autecology of Thelephorales (Basidiomycota, Fungi).01.01.200631.12.2009Urmas KõljalgUniversity of Tartu; University of Tartu, Faculty of Science and Technology (old)62 294,25 EUR
MUUVP1UM10179Ligipääs andmebaasi platvormile PlutoF01.09.201031.12.2011Urmas KõljalgUniversity of Tartu; University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University23 520,00 EUR
PRGPRG1170Discovering and communicating species01.01.202131.12.2025Urmas KõljalgUniversity of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences514 250,00 EUR
MUULLTOM19130 (hange 202812)Assessment of threat status of selected fungal species in Estonia08.03.201901.04.2019Irja SaarUniversity of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences18 163,40 EUR
MUUSP1LM11186TNatural history archives and information network (NATARC)01.01.201131.12.2015Urmas KõljalgUniversity of Tartu; University of Tartu, University of Tartu Natural History Museum and Botanical Garden2 243 298,65 EUR
HLKHLK06-4Loodusteaduslike kogude veebipõhine andmebaas01.01.200631.12.2008Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden, Museums of Tartu University47 509,23 EUR
TTTT14Natural History Archives and Information Network01.04.202131.12.2024Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden241 000,00 EUR
IUTIUT20-53Natural History Archives and Information network01.01.201431.12.2019Urmas KõljalgUniversity of Tartu, University of Tartu Natural History Museum and Botanical Garden295 076,76 EUR