See veebileht kasutab küpsiseid kasutaja sessiooni andmete hoidmiseks. Veebilehe kasutamisega nõustute ETISe kasutustingimustega. Loe rohkem
Olen nõus

Mait Metspalu

https://www.etis.ee/CV/Mait_Metspalu/est
24.08.1975
+3725283315
mait.metspalu@ut.ee
G-8671-2015
www.evolutsioon.ut.ee/MAIT

Teenistuskäik

Töökohad ja ametid
01.01.2021–...   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, genoomika instituut, evolutisoonilise genoomika professor (1,00)
01.03.2020–31.12.2020   
Tartu Ülikool, Tartu Ülikooli genoomika instituut, evolutisoonilise genoomika juhtivteadur (0,50)
01.06.2018–29.02.2020   
Tartu Ülikool, Tartu Ülikooli genoomika instituut, moodsa populatsioonigeneetika vanemteadur (0,50)
01.06.2018–31.12.2020   
Tartu Ülikool, Tartu Ülikooli genoomika instituut, direktor (0,50)
01.01.2018–31.05.2018   
Tartu Ülikool, Tartu Ülikooli genoomika instituut, asedirektor (1,00)
02.09.2014–31.12.2017   
Eesti Biokeskus, Direktor (0,50)
02.09.2014–31.12.2017   
Eesti Biokeskus, Vanemteadur (0,50)
2012–2013   
Kalifornia Ülikool, Berkeley, Külalisteadur (1,00)
03.05.2010–01.09.2014   
Eesti Biokeskus, Teadusdirektor (0,50)
03.05.2010–01.09.2014   
Eesti Biokeskus, Vanemteadur (0,50)
01.09.2009–31.12.2009   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Molekulaar- ja Rakubioloogia Instituut, teadur (0,50)
01.08.2007–31.08.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Molekulaar- ja rakubioloogia instituut, spetsialist (0,10)
01.01.2006–02.05.2010   
Eesti Biokeskus, Erakorraline vanemteadur (1,00)
01.07.2005–31.12.2005   
Eesti Biokeskus, Erakorraline teadur (1,00)
 
 
Haridustee
2001–2005   
TÜ doktoriõpe molekulaarbioloogia ja evolutsiooni erialal
1999–2001   
TÜ magistriõpe molekulaarbioloogia ja evolutsiooni erialal
1994–1999   
TÜ bakalaureuseõpe loodusgeograafia ja maastikuökoloogia erialal
 
 
Teadusorganisatsiooniline ja -administratiivne tegevus
2008−...   
Euroopa Inimesegeneetika ühingu liige
2000−...   
Eesti Inimesegeneetika ühingu liige
2014−2019   
IUT 24-1 Täisgenoomse ajastu koidik arheogeneetikas; põhitäitja
2013−2016   
FP7-PEOPLE-2012-IRSES NEFREX vastutav täitja
2012−2015   
EBK poolne vastutav täitja; Uudne melanoomi patogeneesi immuunogeneetiline iseloomustamine; TerVE; SLOTI12105T
2011−2014   
Vastutav täitja ETF8973 Euraasia populatsioonide geneetiline struktuur ja kohastumine lokaalses keskkonnas arktika populatsioonide näitel
2011−2015   
Koordinaator; Eesti Genoomikakeskus; Riikliku tähtsusega infrastruktuuri kaasajastamine SA Archimedes
2008−2011   
Administreerin EBK EU granti ECOGENE
2003−2006   
Administreerisin EBK EU granti GENERA
2001−2004   
Administreerisin EBK EU granti GENEMILL

Kvalifikatsioon

Teaduskraadid
Mait Metspalu, doktorikraad, 2005, (juh) Toomas Kivisild; Richard Villems, Through the course of prehostory in India: tracing the mtDNA trail, Tartu Ülikool, Bioloogia-geograafiateaduskond.
Mait Metspalu, magistrikraad (teaduskraad), 2001, (juh) Toomas Kivisild; Richard Villems, Common maternal legacy of Indian caste and tribal populations, Tartu Ülikool, Bioloogia-geograafiateaduskond.
 
 
Teaduspreemiad ja tunnustused
2017, Mait Metspalu, Riigi teaduspreemia "Inimkonna geneetilise varieeruvuse olemus ja kujunemine"
2000, Mait Metspalu, Bakalaureusetöö "Sümbiontne lämmastiku fikseerimine Alnus-Frankia sümbioosis". Juhendajad: Prof. Ülo Mander ja van. tead. Krista Lõhmus. pälvis Eesti Teaduste Akadeemia preemia.
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.3. Geneetika; CERCS KLASSIFIKAATOR: B220 Geneetika, tsütogeneetika
 
 
Lisainfo
Populatsioonigenetika, Evolutsiooniline genoomika, vana-DNA

Jooksvad projektid

Lõppenud projektid

Juhendamisel väitekirjad

Juhendatud väitekirjad

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2021
Sahakyan, Hovhannes; Margaryan, Ashot; Saag, Lauri; Karmin, Monika; Flores, Rodrigo; Haber, Marc; Kushniarevich, Alena; Khachatryan, Zaruhi; Bahmanimehr, Ardeshir; Parik, Jüri; Karafet, Tatiana; Yunusbayev, Bayazit; Reisberg, Tuuli; Solnik, Anu; Metspalu, Ene; Hovhannisyan, Anahit; Khusnutdinova, Elza K.; Behar, Doron M.; Metspalu, Mait; Yepiskoposyan, Levon ... (2021). Origin and diffusion of human Y chromosome haplogroup J1-M267. Scientific Reports, 11, 6659. DOI: 10.1038/s41598-021-85883-2.
1.1.
2020
Oras, Ester; Anderson, Jaanika; Tõrv, Mari; Vahur, Signe; Rammo, Riina; Remmer, Sünne; Mölder, Maarja; Malve, Martin; Saag, Lehti; Saage, Ragnar; Teearu-Ojakäär, Anu; Peets, Pilleriin; Tambets, Kristiina; Metspalu, Mait; Lees, David C.; Barclay, Maxwell V.L.; Hall, Martin J.R.; Ikram, Salima; Piombino-Mascali, Dario (2020). Multidisciplinary investigation of two Egyptian child mummies curated at the University of Tartu Art Museum, Estonia (Late/Graeco-Roman Periods). PLoS ONE, 15 (1), 1−27. DOI: 10.1371/journal.pone.0227446.
1.1.
2020
Pankratov, Vasili; Montinaro, Francesco; Kushniarevich, Alena; Hudjashov, Georgi; Jay, Flora; Saag, Lauri; Flores, Rodrigo; Marnetto, Davide; Seppel, Marten; Kals, Mart; Vosa, Urmo; Taccioli, Cristian; Mols, Mart; Milani, Lili; Aasa, Anto; Lawson, Daniel John; Esko, Tonu; Magi, Reedik; Pagani, Luca; Metspalu, Andres ... Metspalu, Mait (2020). Differences in local population history at the finest level: the case of the Estonian population. European Journal of Human Genetics, 28 (28, 11), 1580−1591. DOI: 10.1038/s41431-020-0699-4.
6.7.
2020
Saag, Lehti; Vasilyev, Sergey V.; Varul, Liivi; Kosorukova, Natalia V.; Gerasimov, Dmitri V.; Oshibkina, Svetlana V.; Griffith, Samuel J.; Solnik, Anu; Saag, Lauri; D'Atanasio, Eugenia; Metspalu, Ene; Reidla, Maere; Rootsi, Siiri; Kivisild; Toomas; Scheib, Christiana Lyn; Tambets, Kristiina; Kriiska Aivar; Metspalu Mait (2020). Genetic ancestry changes in Stone to Bronze Age transition in the East European plain. bioRxiv, 1−30. DOI: 10.1101/2020.07.02.184507.
1.1.
2019
Saag, Lehti; Laneman, Margot; Varul, Liivi; Malve, Martin; Valk, Heiki; Razzak, Maria A.; Shirobokov, Ivan G.; Khartanovich, Valeri I.; Mikhaylova, Elena R.; Kushniarevich, Alena; Scheib, Christiana Lyn; Solnik, Anu; Reisberg, Tuuli; Parik, Juri; Saag, Lauri; Metspalu, Ene; Rootsi, Siiri; Montinaro, Francesco; Remm, Maido; Magi, Reedik ... Tambets, Kristiina (2019). The Arrival of Siberian Ancestry Connecting the Eastern Baltic to Uralic Speakers further East. Current Biology, 29 (10), 1701−1728. DOI: 10.1016/j.cub.2019.04.026.
1.1.
2019
Yelmen, Burak; Mondal, Mayukh; Marnetto, Davide; Pathak, Ajai K.; Montinaro, Francesco; Romero, Irene Gallego; Kivisild, Toomas; Metspalu, Mait; Pagani, Luca (2019). Ancestry-Specific Analyses Reveal Differential Demographic Histories and Opposite Selective Pressures in Modern South Asian Populations. Molecular Biology and Evolution, 36 (8), 1628−1642. DOI: 10.1093/molbev/msz037.
1.1.
2019
Ongaro, Linda; Scliar, Marilia O; Flores, Rodrigo; Raveane, Alessandro; Marnetto, Davide; Sarno, Stefania; Gnecchi-Ruscone, Guido A; Alarcón-Riquelme, Marta E; Patin, Etienne; Wangkumhang, Pongsakorn; Hellenthal, Garrett; Gonzalez-Santos, Miguel; King, Roy J; Kouvatsi, Anastasia; Balanovsky, Oleg; Balanovska, Elena; Atramentova, Lubov; Turdikulova, Shahlo; Mastana, Sarabjit; Marjanovic, Damir ... Montinaro, Francesco (2019). The Genomic Impact of European Colonization of the Americas. Current Biology, 29 (23), 3974−3986.e4. DOI: 10.1016/j.cub.2019.09.076.
1.1.
2019
Tamm, Erika; Di Cristofaro, Julie; Mazieres, Stephane; Pennarun, Erwan; Kushniarevich, Alena; Raveane, Alessandro; Semino, Ornella; Chiaroni, Jacques; Pereira, Luisa; Metspalu, Mait; Montinaro, Francesco (2019). Genome-wide analysis of Corsican population reveals a close affinity with Northern and Central Italy. Scientific Reports, 9, ARTN 13581. DOI: 10.1038/s41598-019-49901-8.
1.1.
2019
Jacobs, Guy S.; Hudjashov, Georgi; Saag, Lauri; Kusuma, Pradiptajati; Darusallam, Chelzie C.; Lawson, Daniel J.; Mondal, Mayukh; Pagani, Luca; Ricaut, François-Xavier; Stoneking, Mark; Metspalu, Mait; Sudoyo, Herawati; Lansing, J. Stephen; Cox, Murray P. (2019). Multiple Deeply Divergent Denisovan Ancestries in Papuans. Cell, 177 (4), 1010−1054. DOI: 10.1016/j.cell.2019.02.035.
1.1.
2019
Yunusbaev, Ural; Valeev, Albert; Yunusbaeva, Milyausha; Kwon, Hyung Wook; Magi, Reedik; Metspalu, Mait; Yunusbayev, Bayazit (2019). Reconstructing recent population history while mapping rare variants using haplotypes. Scientific Reports, 9, ARTN 5849. DOI: 10.1038/s41598-019-42385-6.
1.1.
2019
Jeong, Choongwon; Balanovsky, Oleg; Lukianova, Elena; Kahbatkyzy, Nurzhibek; Flegontov, Pavel; Zaporozhchenko, Valery; Immel, Alexander; Wang, Chuan-Chao; Ixan, Olzhas; Khussainova, Elmira; Bekmanov, Bakhytzhan; Zaibert, Victor; Lavryashina, Maria; Pocheshkhova, Elvira; Yusupov, Yuldash; Agdzhoyan, Anastasiya; Koshel, Sergey; Bukin, Andrei; Nymadawa, Pagbajabyn; Turdikulova, Shahlo ... Krause, Johannes (2019). The genetic history of admixture across inner Eurasia. Nature Ecology & Evolution, 3 (6), 966−976. DOI: 10.1038/s41559-019-0878-2.
1.1.
2019
Raveane, A; Aneli, S; Montinaro, F; Athanasiadis, G; Barlera, S; Birolo, G; Boncoraglio, G; Di Blasio, A M; Di Gaetano, C; Pagani, L; Parolo, S; Paschou, P; Piazza, A; Stamatoyannopoulos, G; Angius, A; Brucato, N; Cucca, F; Hellenthal, G; Mulas, A; Peyret-Guzzon, M ... Capelli, C (2019). Population structure of modern-day Italians reveals patterns of ancient and archaic ancestries in Southern Europe. Science Advances, 5 (9), eaaw3492−eaaw3492. DOI: 10.1126/sciadv.aaw3492.
1.1.
2019
Järve, Mari; Saag, Lehti; Scheib, Christiana Lyn; Pathak, Ajai K; Montinaro, Francesco; Pagani, Luca; Flores, Rodrigo; Guellil, Meriam; Saag, Lauri; Tambets, Kristiina; Kushniarevich, Alena; Solnik, Anu; Varul, Liivi; Zadnikov, Stanislav; Petrauskas, Oleg; Avramenko, Maryana; Magomedov, Boris; Didenko, Serghii; Toshev, Gennadi; Bruyako, Igor ... Villems, Richard (2019). Shifts in the Genetic Landscape of the Western Eurasian Steppe Associated with the Beginning and End of the Scythian Dominance. Current Biology, 29 (14), 2430−2452. DOI: 10.1016/j.cub.2019.06.019.
6.8.
2019
Tätte, Kai; Pagani, Luca; Pathak, Ajai K; Kõks, Sulev; Ho Duy, Binh; Ho, Xuan Dung; Sultana, Gazi Nurun Nahar; Sharif, Mohd Istiaq; Asaduzzaman, Md; Behar, Doron M; Hadid, Yarin; Villems, Richard; Chaubey, Gyaneshwer; Kivisild, Toomas; Metspalu, Mait (2019). Author Correction: The genetic legacy of continental scale admixture in Indian Austroasiatic speakers. Scientific Reports, 9 (1), 6104−6104. DOI: 10.1038/s41598-019-42195-w.
1.1.
2018
Hudjashov, Georgi; Endicott, Phillip; Post, Helen; Nagle, Nano; Ho, Simon Y W; Lawson, Daniel J; Reidla, Maere; Karmin, Monika; Rootsi, Siiri; Metspalu, Ene; Saag, Lauri; Villems, Richard; Cox, Murray P; Mitchell, R John; Garcia-Bertrand, Ralph L; Metspalu, Mait; Herrera, Rene J (2018). Investigating the origins of eastern Polynesians using genome-wide data from the Leeward Society Isles. Scientific Reports, 8 (1), 1823−1823.10.1038/s41598-018-20026-8.
1.1.
2018
Metspalu, Mait; Mondal, Mayukh; Chaubey, Gyaneshwer (2018). The genetic makings of South Asia. 53, 128−133. DOI: 10.1016/j.gde.2018.09.003.
1.1.
2018
Tambets, Kristiina; Yunusbayev, Bayazit; Hudjashov, Georgi; Ilumäe, Anne-Mai; Rootsi, Siiri; Honkola, Terhi; Vesakoski, Outi; Atkinson, Quentin; Skoglund, Pontus; Kushniarevich, Alena; Litvinov, Sergey; Reidla, Maere; Metspalu, Ene; Saag, Lehti; Rantanen, Timo; Karmin, Monika; Parik, Jüri; Zhadanov, Sergey I; Gubina, Marina; Damba, Larisa D ... Metspalu, Mait (2018). Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations. Genome Biology, 19 (1), 139−139. DOI: 10.1186/s13059-018-1522-1.
1.1.
2018
Pathak, Ajai K; Kadian, Anurag; Kushniarevich, Alena; Montinaro, Francesco; Mondal, Mayukh; Ongaro, Linda; Singh, Manvendra; Kumar, Pramod; Rai, Niraj; Parik, Jüri; Metspalu, Ene; Rootsi, Siiri; Pagani, Luca; Kivisild, Toomas; Metspalu, Mait; Chaubey, Gyaneshwer; Villems, Richard (2018). The Genetic Ancestry of Modern Indus Valley Populations from Northwest India. The American Journal of Human Genetics, 103 (6), 918−929. DOI: 10.1016/j.ajhg.2018.10.022.
1.1.
2018
Scheib, C L; Li, Hongjie; Desai, Tariq; Link, Vivian; Kendall, Christopher; Dewar, Genevieve; Griffith, Peter William; Mörseburg, Alexander; Johnson, John R; Potter, Amiee; Kerr, Susan L; Endicott, Phillip; Lindo, John; Haber, Marc; Xue, Yali; Tyler-Smith, Chris; Sandhu, Manjinder S; Lorenz, Joseph G; Randall, Tori D; Faltyskova, Zuzana ... Kivisild, Toomas (2018). Ancient human parallel lineages within North America contributed to a coastal expansion. Science, 360 (6392), 1024−1027. DOI: 10.1126/science.aar6851.
1.1.
2018
Jagoda, Evelyn; Lawson, Daniel J.; Wall, Jeffrey D.; Lambert, David; Muller, Craig; Westaway, Michael; Leavesley, Matthew; Capellini, Terence D.; Lahr, Marta Mirazon; Gerbault, Pascale; Thomas, Mark G.; Migliano, Andrea Bamberg; Willerslev, Eske; Metspalu, Mait; Pagani, Luca (2018). Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans. Molecular Biology and Evolution, 35 (3), 623−630.10.1093/molbev/msx314.
6.3.
2018
Oras, E.; Anderson, J.; Rammo, R.; Tõrv, M.; Saag, L.; Vahur, S.; Rannamäe, E.; Teearu-Ojakäär, A.; Heikkilä, R. K.; Ehrlich, F.; Malve, M.; Metspalu, M.; Mölder, M.; Peets, P.; Remmer, S.; Saage, R.; Saarma, U.; Selin, A.; Tambets, K. (2018). Muumiapalavik Tartu Ülikoolis. Tutulus: Eesti arheoloogia aastakiri, 2018, 11−15.
6.3.
2018
Oras, Ester; Anderson, Jaanika; Rammo, Riina; Tõrv, Mari; Saag, Lehti; Vahur, Signe; Rannamäe, Eve; Teearu-Ojakäär, Anu; Heikkilä, Raija Katarina; Ehrlich, Freydis; Malve, Martin; Metspalu, Mait; Mölder, Maarja; Peets, Pilleriin; Remmer, Sünne; Saage, Ragnar; Saarma, Urmas; Selin, Argo; Tambets, Kristiina (2018). Muumiapalavik Tartu Ülikoolis. Tutulus: Eesti arheoloogia aastakiri, 7. aastakäik, 11−15.
6.4.
2018
Jääts, Indrek; Leete, Art; Arukask, Madis; Karm, Svetlana; Koosa, Piret; Kuznetsov, Nikolai; Metspalu, Mait; Tambets, Kristiina, Villems, Richard (2018). Uurali kaja: Soome-ugri ja samojeedi rahvad. Tartu: Eesti Rahva Muuseum.
1.1.
2017
Sahakyan, H; Kashani, BH; Tamang, R; Kushniarevich, A; Francis, A; Costa, MD; Pathak, AK; …Parik, J; …Metspalu, E; Pennarun, E; Karmin, M; Tamm, E; Tambets, K; …Reisberg, T; Reidla, M; Achilli, A; Olivieri, A; …Litvinov, S; Bermisheva, M; Khusnutdinova, E ... Villems, R. (2017). Origin and spread of human mitochondrial DNA haplogroup U7. Scientific Reports, 7, Article number: 46044. DOI: 10.1038/srep46044.
1.1.
2017
Saag, L.; Varul, L.; Scheib, CL.; Stenderup, J.; Allentoft, ME.; Saag, L.; Pagani, L.; Reidla, M.; Tambets, K.; Metspalu, E.; Kriiska, A.; Willerslev, E.; Kivisild, T.; Metspalu, M. (2017). Extensive farming in Estonia started through a sex-biased migration from the Steppe. Current Biology, 27 (14), 2187−2193. DOI: 10.1016/j.cub.2017.06.022.
1.1.
2017
Chaubey, Gyaneshwer; Ayub, Qasim; Rai, Niraj; Prakash, Satya; Mushrif-Tripathy, Veena; Mezzavilla, Massimo; Pathak, Ajai Kumar; Tamang, Rakesh; Firasat, Sadaf; Reidla, Maere; Karmin, Monika; Rani, Deepa Selvi; Reddy, Alla G; Parik, Jüri; Metspalu, Ene; Rootsi, Siiri; Dalal, Kurush; Khaliq, Shagufta; Mehdi, Syed Qasim; Singh, Lalji ... Thangaraj, Kumarasamy (2017). "Like sugar in milk": reconstructing the genetic history of the Parsi population. Genome Biology, 18 (1), 110−110.10.1186/s13059-017-1244-9.
1.1.
2017
Chaubey, G; Tamang, R; Pennarun, E; Dubey, P; Rai, N; Upadhyay, RK; Meena, RP; Patel, JR; van Driem, G; Thangaraj, K; Metspalu, M; Villems R. (2017). Reconstructing the population history of the largest tribe of India: the Dravidian speaking Gond. European Journal of Human Genetics, 25(4), 493−498.10.1038/ejhg.2016.198.
1.1.
2017
Behar, Doron M; Saag, Lauri; Karmin, Monika; Gover, Meir G; Wexler, Jeffrey D; Sanchez, Luisa Fernanda; Greenspan, Elliott; Kushniarevich, Alena; Davydenko, Oleg; Sahakyan, Hovhannes; Yepiskoposyan, Levon; Boattini, Alessio; Sarno, Stefania; Pagani, Luca; Carmi, Shai; Tzur, Shay; Metspalu, Ene; Bormans, Concetta; Skorecki, Karl; Metspalu, Mait ... Villems, Richard (2017). The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome. Scientific Reports, 7 (1), 14969−14969.10.1038/s41598-017-14761-7.
1.1.
2017
Eichstaedt, Christina A; Pagani, Luca; Antao, Tiago; Inchley, Charlotte E; Cardona, Alexia; Mörseburg, Alexander; Clemente, Florian J; Sluckin, Timothy J; Metspalu, Ene; Mitt, Mario; Mägi, Reedik; Hudjashov, Georgi; Metspalu, Mait; Mormina, Maru; Jacobs, Guy S; Kivisild, Toomas (2017). Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations. Scientific Reports, 7 (1), 13042−13042.10.1038/s41598-017-13382-4.
1.1.
2017
Bortolini, Eugenio; Pagani, Luca; Crema, Enrico R; Sarno, Stefania; Barbieri, Chiara; Boattini, Alessio; Sazzini, Marco; da Silva, Sara Graça; Martini, Gessica; Metspalu, Mait; Pettener, Davide; Luiselli, Donata; Tehrani, Jamshid J (2017). Inferring patterns of folktale diffusion using genomic data. Proceedings of the National Academy of Sciences, 114 (34), 9140−9145.10.1073/pnas.1614395114.
1.1.
2017
Bortolini, Eugenio; Pagani, Luca; Crema, Enrico R; Sarno, Stefania; Barbieri, Chiara; Boattini, Alessio; Sazzini, Marco; da Silva, Sara Graça; Martini, Gessica; Metspalu, Mait; Pettener, Davide; Luiselli, Donata; Tehrani, Jamshid J (2017). Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales. Proceedings of the National Academy of Sciences, 114 (41), E8556−E8556.10.1073/pnas.1715139114.
5.2.
2017
Varul, Liivi; Tõrv, Mari; Kriiska, Aivar; Saag, Lehti; Metspalu, Mait; Lõugas, Lembi (2017). A case study of a secondary burial from Corded Ware Culture in Estonia - problems and results. In: Jos Bazelmans and Klinkhamer Group (Ed.). Building Bridges: Abstract book of the 23rd Annual Meeting of the European Association of Archaeologists 2017 (397). Annual Meeting of the European Association of Archaeologists in Maastricht, 30.08-3.09.2017.
1.1.
2016
Pankratov, Vasili; Litvinov, Sergei; Kassian, Alexei; Shulhin, Dzmitry; Tchebotarev, Lieve; Yunusbayev, Bayazit; Möls, Märt; Sahakyan, Hovhannes; Yepiskoposyan, Levon; Rootsi, Siiri; Metspalu, Ene; Golubenko, Maria; Ekomasova, Natalia; Akhatova, Farida; Khusnutdinova, Elza; Heyer, Evelyne; Endicott, Phillip; Derenko, Miroslava; Malyarchuk, Boris; Metspalu, Mait ... Kushniarevich, Alena (2016). East Eurasian ancestry in the middle of Europe: genetic footprints of Steppe nomads in the genomes of Belarusian Lipka Tatars. Scientific Reports, 6, -−-. DOI: 10.1038/srep30197.
1.1.
2016
Malaspinas, Anna-Sapfo; Westaway, Michael C; Muller, Craig; Sousa, Vitor C; Lao, Oscar; Alves, Isabel; Bergström, Anders; Athanasiadis, Georgios; Cheng, Jade Y; Crawford, Jacob E; Heupink, Tim H; Macholdt, Enrico; Peischl, Stephan; Rasmussen, Simon; Schiffels, Stephan; Subramanian, Sankar; Wright, Joanne L; Albrechtsen, Anders; Barbieri, Chiara; Dupanloup, Isabelle ... Willerslev, Eske (2016). A genomic history of Aboriginal Australia. Nature, 538 (7624), 207−214. DOI: 10.1038/nature18299.
1.1.
2016
Inchley, Charlotte E; Larbey, Cynthia D A; Shwan, Nzar A A; Pagani, Luca; Saag, Lauri; Antão, Tiago; Jacobs, Guy; Hudjashov, Georgi; Metspalu, Ene; Mitt, Mario; Eichstaedt, Christina A; Malyarchuk, Boris; Derenko, Miroslava; Wee, Joseph; Abdullah, Syafiq; Ricaut, François-Xavier; Mormina, Maru; Mägi, Reedik; Villems, Richard; Metspalu, Mait ... Kivisild, Toomas (2016). Selective sweep on human amylase genes postdates the split with Neanderthals. Scientific Reports, 6, 37198−37198. DOI: 10.1038/srep37198.
1.1.
2016
Mallick, Swapan; Li, Heng; Lipson, Mark; Mathieson, Iain; Gymrek, Melissa; Racimo, Fernando; Zhao, Mengyao; Chennagiri, Niru; Nordenfelt, Susanne; Tandon, Arti; Skoglund, Pontus; Lazaridis, Iosif; Sankararaman, Sriram; Fu, Qiaomei; Rohland, Nadin; Renaud, Gabriel; Erlich, Yaniv; Willems, Thomas; Gallo, Carla; Spence, Jeffrey P ... Reich, David (2016). The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature, 538 (7624), 201−206. DOI: 10.1038/nature18964.
1.1.
2016
Mörseburg, Alexander; Pagani, Luca; Ricaut, Francois-Xavier; Yngvadottir, Bryndis; Harney, Eadaoin; Castillo, Cristina; Hoogervorst, Tom; Antao, Tiago; Kusuma, Pradiptajati; Brucato, Nicolas; Cardona, Alexia; Pierron, Denis; Letellier, Thierry; Wee, Joseph; Abdullah, Syafiq; Metspalu, Mait; Kivisild, Toomas (2016). Multi-layered population structure in Island Southeast Asians. European Journal of Human Genetics, 24 (11), 1605−1611. DOI: 10.1038/ejhg.2016.60.
1.1.
2015
Sudmant, P.H.; Mallick, S.; Nelson, B.J.; Hormozdiari, F.; Krumm, N.; Huddleston, J.; Coe, B.P.; Baker, C.; Nordenfelt, S.; Bamshad, M.; Jorde, L.B.; Posukh, O.L.; Sahakyan, H.; Watkins, W.S.; Yepiskoposyan, L.; Abdullah, M.S.; Bravi, C.M.; Capelli, C.; Hervig, T.; Wee, J.T. ... Eichler, E.E. (2015). Global diversity, population stratification, and selection of human copy number variation. Science, 349 (6253), 1181. DOI: 10.1126/science.aab3761.
1.1.
2015
Raghavan, M.; Steinrücken, M.; Harris, K.; Schiffels, S.; Rasmussen, S.; DeGiorgio, M.; Albrechtsen, A.; Valdiosera, C.; Ávila-Arcos, M.C.; Malaspinas, A.S.; Eriksson, A.; Moltke, I.; Metspalu, M.; Homburger, J.R.; Wall, J.; Cornejo, O.E.; Moreno-Mayar, J.V.; Korneliussen, T.S.; Pierre, T.; Rasmussen, M. ... Willerslev, E. (2015). Genomic evidence for the Pleistocene and recent population history of Native Americans. Science, 349 (6250), aab3884. DOI: 10.1126/science.aab3884.
1.1.
2015
Allentoft, M.E.; Sikora, M.; Sjögren, K.G.; Rasmussen, S.; Rasmussen, M.; Stenderup, J.; Damgaard, P.B.; Schroeder, H.; Ahlström, T.; Vinner, L.; Malaspinas, A.S.; Margaryan, A.; Higham, T.; Chivall, D.; Lynnerup, N.; Harvig, L.; Baron, J.; Della Casa, P.; Dąbrowski, P.; Duffy, P.R. ... Willerslev, E. (2015). Population genomics of Bronze Age Eurasia. Nature, 522 (7555), 167−72. DOI: 10.1038/nature14507.
1.1.
2015
Yunusbayev, B.; Metspalu, M.; Metspalu, E.; Valeev, A.; Litvinov, S.; Valiev, R.; Akhmetova, V.; Balanovska, E.; Balanovsky, O.; Turdikulova, S.; Dalimova, D.; Nymadawa, P.; Bahmanimehr, A.; Sahakyan, H.; Tambets, K.; Fedorova, S.; Barashkov, N.; Khidiatova, I.; Mihailov, E.; Khusainova, R. ... Villems, R. (2015). The Genetic Legacy of the Expansion of Turkic-Speaking Nomads Across Eurasia. PLoS Genetics, 11 (4), e1005068. DOI: 10.1371/journal.pgen.1005068.
1.1.
2015
Kushniarevich, A.; Utevska, O.; Chuhryaeva, M.; Agdzhoyan, A.; Dibirova, K.; Uktveryte, I.; Möls, M.; Mulahasanovic, L.; Pshenichnov, A.; Frolova, S.; Shanko, A.; Metspalu, E.; Reidla, M.; Tambets, K.; Tamm, E.; Koshel, S.; Zaporozhchenko, V.; Atramentova, L.; Kučinskas, V.; Davydenko, O. ... Balanovsky, O. (2015). Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. PLoS ONE, 10 (9), e0135820. DOI: 10.1371/journal.pone.0135820.
1.1.
2015
Rasmussen, Simon; Allentoft, Morten Erik; Nielsen, Kasper; Orlando, Ludovic; Sikora, Martin; Sjögren, Karl-Göran; Pedersen, Anders Gorm; Schubert, Mikkel; Van Dam, Alex; Kapel, Christian Moliin Outzen; Nielsen, Henrik Bjørn; Brunak, Søren; Avetisyan, Pavel; Epimakhov, Andrey; Khalyapin, Mikhail Viktorovich; Gnuni, Artak; Kriiska, Aivar; Lasak, Irena; Metspalu, Mait; Moiseyev, Vyacheslav ... Willerslev, Eske (2015). Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago. Cell, 163 (3), 571−582. DOI: 10.1016/j.cell.2015.10.009.
1.1.
2015
Karmin, Monika; Saag, Lauri; Vicente, Mário; Wilson Sayres, Melissa A; Järve, Mari; Talas, Ulvi Gerst; Rootsi, Siiri; Ilumäe, Anne-Mai; Mägi, Reedik; Mitt, Mario; Pagani, Luca; Puurand, Tarmo; Faltyskova, Zuzana; Clemente, Florian; Cardona, Alexia; Metspalu, Ene; Sahakyan, Hovhannes; Yunusbayev, Bayazit; Hudjashov, Georgi; DeGiorgio, Michael ... Kivisild, Toomas (2015). A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome Research, 25 (4), 459−466. DOI: 10.1101/gr.186684.114.
1.1.
2014
Raghavan, M.; DeGiorgio, M.; Albrechtsen, A.; Moltke, I.; Skoglund, P.; Korneliussen, T.S.; Grønnow, B.; Appelt, M.; Gulløv, H.C.; Friesen, T.M.; Fitzhugh, W.; Malmström, H.; Rasmussen, S.; Olsen, J.; Melchior, L.; Fuller, B.T.; Fahrni, S.M.; Stafford, T. Jr.; Grimes, V.; Renouf, M.A. ... Willerslev, E. (2014). The genetic prehistory of the New World Arctic. Science, 1255832.
1.1.
2014
Clemente, FJ.; Cardona, A.; Inchley, CE.; Peter, BM.; Jacobs, G.; Pagani, L.; Lawson, DJ.; Antao, T.; Vicente, M.; Mitt, M.; DeGiorgio, M.; Faltyskova, Z.; Xue, YL.; Ayub, Q.; Szpak, M.; Magi, R.; Eriksson, A.; Manica, A.; Raghavan, M.; Rasmussen, M. ... Kivisild, T. (2014). A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. The American Journal of Human Genetics, 95 (5), 584−589.10.1016/j.ajhg.2014.09.016.
1.1.
2014
Lazaridis, I.; Patterson, N.; Mittnik, A.; Renaud, G.; Mallick, S.; Kirsanow, K.; Sudmant, P.H.; Schraiber, J.G.; Castellano, S.; Lipson, M.; Berger, B.; Economou, C.; Bollongino, R.; Fu, Q.; Bos, K.I.; Nordenfelt, S.; Li, H.; de Filippo, C.; Prüfer, K.; Sawyer, S. ... Krause, J. (2014). Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature, 409−13.
1.1.
2014
Cardona, A; Pagani, L; Antao, T; Lawson, DJ; Eichstaedt, CA, Yngvadottir, B; Shwe, MT; Wee, J; Romero, IG; Raj, S; Metspalu, M; Villems, R; Willerslev, E; Tyler-Smith, C; Malyarchuk, BA; Derenko, MV; Kivisild, T. (2014). Genome-wide analysis of cold adaptation in indigenous siberian populations. PLoS ONE, 9 (5), e98076.10.1371/journal.pone.0098076.
1.1.
2014
Chaubey, G.; Singh, M.; Crivellaro, F.; Tamang, R.; Nandan, A.; Singh, K.; Sharma, V.K.; Pathak, A.K.; Shah, A.M.; Sharma, V.; Singh, V.K.; Selvi Rani, D.; Rai, N.; Kushniarevich, A.; Ilumäe, A.M.; Karmin, M.; Phillip, A.; Verma, A.; Prank, E.; Singh, V.K. ... Thangaraj, K. (2014). Unravelling the distinct strains of Tharu ancestry. European Journal of Human Genetics, 22 (12), 1404−1412.10.1038/ejhg.2014.36.
1.1.
2014
Rasmussen, M.; Anzick, S.L; Waters, M.R; Skoglund, P.; l DeGiorgio, M; Stafford, T.W. Jr; Rasmussen, S.; Moltke, I.; Albrechtsen, A.; Doyle, S.M.; Poznik, G.D.; Gudmundsdottir, V.; Yadav, R.; Malaspinas, A.-S.; Stockton White V, S.; Allentoft, M.E.; Cornejo, O.E.; Tambets, K.; Eriksson, A.; Heintzman, P.D. ... Willerslev, E. (2014). The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature, 225−29.
1.1.
2014
Raghavan, M.; Skoglund, P.; Graf, K.E.; Metspalu, M.; Albrechtsen, A.; Moltke, I.; Rasmussen, S.; Stafford, T.W. Jr.; Orlando, L.; Metspalu, E.; Karmin, M.; Tambets, K.; Rootsi, S.; Mägi, R.; Campos, P.F., Balanovska, E., Balanovsky, O., Khusnutdinova, E., Litvinov, S.; Osipova, L.P.; Fedorova, S.A.; Voevoda, M.I.; DeGiorgio, M.; Sicheritz-Ponten, T. ... Willerslev, E. (2014). Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature, 505 (7481), 87−91. DOI: 10.1038/nature12736.
1.1.
2013
Rootsi, S.; Behar, D.; Järve, M.; Lin, AA.; Myres, NM.; Passarelli, B.; Poznik, D.; Tzu, S.; Sahakyan, H.; Pathak, A.; Metspalu, M.; Grugni, V.; Semino, O.; Metspalu, E.; Skorecki, K.; Villems, R.; Kivisild, T.; Underhill, P. (2013). Phylogenetic applications of whole Y-chromosome sequences and the Near Eastern origin of Ashkenazi Levites. Nature Communications, 4, Article 2928.10.1038/ncomms3928.
1.1.
2013
Behar, DM.; Metspalu, M.; Baran, Y.; Kopelman, NM.; Yunusbayev, B.; Gladstein, A.; Tzur, S.; Sahakyan, H.; Bahmanimehr, A.; Yepiskoposyan, L.; Tambets, K.; Khusnutdinova, EK.; Kushniarevich, A.; Malanovsky, O.; Balanovska, E.; Kovacevic, L.; Marjanovic, D.; Mihailov, E.; Kouvatsi, A.; Traintaphyllidis, C. ... Rosenberg, N. (2013). No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews. Human Biology, 85 (6), 859−900.
1.1.
2013
Christofaro, J.; Pennarun, E.; Mazires, S.; Meyers, NM.; Lin, AA.; Temori, SA.; Metspalu, M.; Metspalu, E.; Witzel, M.; King, RJ.; Underhill, PA.; Villems, R.; Chiaroni, J. (2013). Afghan Kindu Kush where Eurasian sub-continent gene flows converge. PLoS ONE, 8 (10), e76748.10.1371/journal.pone.0076748.
1.1.
2013
Basu Mallick, C; Iliescu, FM; Möls, M, Hill; S, Tamang, R; Chaubey, G; Goto, R; Ho, SY; Gallego Romero, I; Crivellaro, F; Hudjashov, G; Rai, N; Metspalu, M; Mascie-Taylor, CG; Pitchappan, R; Singh, L; Mirazon-Lahr, M; Thangaraj, K; Villems, R; Kivisild, T. (2013). The Light Skin Allele of SLC24A5 in South Asians and Europeans Shares Identity by Descent. PLoS Genetics, 9 (11), e1003912. DOI: 10.1371/journal.pgen.1003912.
1.1.
2013
Migliano, A.; Romero, I.; Metspalu, M.; Leavesley, M.; Pagani, L.; Antao, T.; Huang, D.; Sherman, B.; Siddle, K.; Scoles, C.; Hudjashov, G.; Kaitokai, E.; Mandui, H.; Babalu, A.; Belatti, M.; Cagan, A.; Hopkinshow, B.; Show, C.; Tabbada, K.; Nelis, M. ... Kivisild, T. (2013). Evolution of the pygmy phenotype: evidence of positive selection from genome-wide scans in African, Asian and Melanesian pygmies. Human Biology, 85, 251−284.
1.1.
2013
Fedorova, Sardana; Reidla, Maere; Metspalu, Ene; Metspalu, Mait; Rootsi, Siiri; Tambets, Kristiina; Trofimova, Natalya; Zhadanov, Sergey; Hooshiar Kashani, Basharak; Olivieri, Anna; Osipova, Ludmila; Platonov, Fedor; Tomsky, Mikhail; Khusnutdinova, Elza; Torroni, Antonio; Villems, Richard (2013). Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia. BMC Evolutionary Biology, 127. DOI: 10.1186/1471-2148-13-127.
1.1.
2013
Esko, T; Mezzavilla, M; Nelis, M; Borel, C; Debniak, T; Jakkula, E; Julia, A; Karachanak, S; Khrunin, A; Kisfali, P; Krulisova, V; Aušrelé, Kučinskiené, Z; Rehnström, K; Traglia, M; Nikitina-Zake, L; Zimprich, F; Antonarakis, SE; Estivill, X; Glavač, D; Gut, I ... D'Adamo, P (2013). Genetic characterization of northeastern Italian population isolates in the context of broader European genetic diversity. European Journal of Human Genetics, 21 (6), 659−665. DOI: 10.1038/ejhg.2012.229.
1.1.
2012
Pennarun, E.; Kivisild, T.; Metspalu, E.; Metspalu, M.; Reisberg, T.; Behar, D.M.; Jones, S.; Villems, R. (2012). Divorcing the Late Upper Palaeolitic Demographic Histories of mtDNA Haplogroupa M1 and U6 in Africa. BMC Evolutionary Biology, 12, 234.10.1186/1471-2148-12-234.
1.1.
2012
Behar, D.M.; van Oven, M.; Rosset, S.; Metspalu, M.; Loogvali, E.L.; Silva, N.M.; Kivisild, T.; Torroni, A.; Villems, R. (2012). A "Copernican" Reassessment of the Human Mitochondrial DNA Tree from its Root. American Journal of Human Genetics, 90 (4), 675−84.
1.1.
2012
Yunusbayev, B.; Metspalu, M.; Järve, M.; Kutujev, I.; Rootsi, S.; Metspalu, E.; Behar, D. M.; Varendi, K.; Sahakyan, H.; Khusainova, R.; Yepiskoposyan, L.; Khusnutdinova, E. K.; Underhill, P. A.; Kivisild, T.; Villems, R. (2012). The Caucasus as an asymmetric semipermeable barrier to ancient human migrations. Molecular Biology and Evolution, 29(1), 359−65.
1.1.
2012
Gallego Romero, I; Basu Mallick, C; Liebert, A; Crivellaro, F; Chaubey, G; Itan, Y; Metspalu, M; Eaaswarkhanth, M; Pitchappan, R; Villems, R; Reich, D; Singh, L; Thangaraj, K; Thomas, MG; Swallow, DM; Mirazon Lahr, M; Kivisild, T. (2012). Herders of Indian and European Cattle Share Their Predominant Allele for Lactase Persistence. Molecular Biology and Evolution, 29(1), 249−60.
1.1.
2011
Metspalu, M.; Romero, IG.; Yunusbayev, B.; Chaubey, G.; Mallick, CB.; Hudjashov, G.; Nelis, M.; Mägi, R.; Metspalu, E.; Remm, M.; Pitchappan, R.; Singh, L.; Thangaraj, K.; Villems, R.; Kivisild, T. (2011). Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia. The American Journal of Human Genetics, 89 (6), 731−44. DOI: 10.1016/j.ajhg.2011.11.010.
1.1.
2011
Chaubey, Gyaneshwer; Metspalu, Mait; Choi, Ying; Mägi, Reedik; Gallego Romero, Irene; Soares, Pedro; van Oven, Mannis; Behar, Doron M; Rootsi, Siiri; Hudjashov, Georgi; Basu Mallick, Chandana; Karmin, Monika; Nelis, Mari; Parik, Jüri; Goverdhana Reddy, Alla; Metspalu, Ene; vanDriem, George; Xue, Yali; Tyler-Smith, Chris; Thangaraj, Kumarasamy ... Kivisild, Toomas. (2011). Population Genetic Structure in Indian Austroasiatic speakers: The Role of Landscape Barriers and Sex-specific Admixture. Molecular Biology and Evolution, 28(2), 1013−24.
1.1.
2011
Rasmussen, M.; Guo, X.; Wang, Y.; Lohmueller, K. E.; Rasmussen, S.; Albrechtsen, A.; Skotte, L.; Lindgreen, S.; Metspalu, M.; Jombart, T.; Kivisild, T.; Zhai, W.; Erikson, A.; Manica, A.; Orlando, L.; De La Vega, F.; Tridico, S.; Metspalu, E.; Nielsen, K.; Avila-Arcos, M.C. ... Willerslev, E. (2011). An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. Science, 334(6052), 94−8.
1.1.
2010
Behar, Doron M; Yunusbayev, Bayazit; Metspalu, Mait; Metspalu, Ene; Rosset, Saharon; Parik, Jüri; Rootsi, Siiri; Chaubey, Gyaneshwer; Kutuev, Ildus; Yudkovsky, Guennady; Khusnutdinova, K. Elza; Balanovsky, Oleg; Semino, Ornella; Pereira, Luisa; Comas, David; Gurwitz, David; Bonne-Tamir, Batsheva; Parfitt, Tudor; Hammer, Michael F.; Skorecki, Karl ... Villems, Richard. (2010). The genome-wide structure of the Jewish people. Nature, 238−42. DOI: 10.1038/nature09103.
1.1.
2010
Underhill, P.A.; Myres, N.M.; Rootsi, S.; Metspalu, M.; Zhivotovsky, L.A.; King, R.J.; Lin, A.A.; Chow, C.E.; Semino, O.; Battaglia, V.; Kutuev, I.; Järve, M.; Chaubey, G.; Ayub, Q.; Mohyuddin, A.; Mehdi, S.Q.; Sengupta, S.; Rogaev, E.I.; Khusnutdinova, E.K.; Pshenichnov, A. ... Kivisild, T. (2010). Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. European Journal of Human Genetics, 18 (4), 479−484. DOI: 10.1038/ejhg.2009.194.
1.1.
2010
Rasmussen, M.; Li, Y.; Lindgreen, S.; Pedersen, J.S.; Albrechtsen, A.; Moltke, I.; Metspalu, M.; Metspalu, E.; Kivisild, T.; Gupta, R.; Bertalan, M.; Nielsen, K.; Gilbert, M.T.; Wang, Y.; Raghavan, M.; Campos, P.F.; Kamp, H.M.; Wilson, A.S.; Gledhill, A.; Tridico, S. ... Willerslev, E. (2010). Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature, 757−762.10.1038/nature08835.
1.1.
2009
Petraglia, M; Clarkson, C; Boivin, N; Haslam, M; Korisettar, R; Chaubey, G; Ditchfield, P; Fuller, D; James, H; Jones, S; Kivisild, T; Koshy, J; LahrM, M; Metspalu, M; Roberts, R; ArnoldL, L. (2009). Population increase and environmental deterioration correspond with microlithic innovations in South Asia ca. 35,000 years ago. Proceedings of the National Academy of Sciences, 106 (30), 12261−12266. DOI: 10.1073/pnas.0810842106.
1.1.
2008
Chaubey, G.; Karmin, M.; Metspalu, E.; Metspalu, M.; Selvi-Rani, D.; Singh, V.K.; Parik, J.; Solnik, A.; Naidu, B.P.; Kumar, A.; Adarsh, N.; Mallick, C.B., Trivedi, B.; Prakash, S.; Reddy, R.; Shukla, P.; Bhagat, S.; Verma, S.; Vasnik, S.; Khan, I.; Barwa, A. ... Villems, R. (2008). Phylogeography of mtDNA haplogroup R7 in the Indian peninsula. BMC Evolutionary Biology, 8 (227), x−x. DOI: 10.1186/1471-2148-8-227.
1.1.
2008
Chaubey, G.; Metspalu, M.; Karmin, M.; Thangaraj, K.; Rootsi, S.; Parik, J.; Solnik, A.; Rani, D.S.; Singh, V.K.; Naidu, B.P.; Reddy, A.G.; Metspalu, E.; Singh, L.; Kivisild, T.; Villems, R. (2008). Language Shift by Indigenous Population: A Model Genetic Study in South Asia. International Journal of Human Genetics, 8, 41−50.
1.1.
2008
Gilbert, M.T.; Kivisild, T.; Grønnow, B.; Andersen, P.K.; Metspalu, E.; Reidla, M.; Tamm, E.; Axelsson, E.; Götherström, A.; Campos, P.F.; Rasmussen, M.; Metspalu, M.; Higham, T.F.; Schwenninger, J.L.; Nathan, R.; De, Hoog, C.J.; Koch, A.; Møller, L.N.; Andreasen, C.; Meldgaard, M. ... Willerslev, E. (2008). Paleo-Eskimo mtDNA Genome Reveals Matrilineal Discontinuity in Greenland. Science, 1787−1789.
1.1.
2008
Thangaraj, K; Chaubey, G; Kivisild, T; Selvi Rani, D; Singh, VK; Ismail, T; Carvalho-Silva, D; Metspalu, M; Bhaskar, LV; Reddy, AG; Chandra, S; Pande, V; Prathap Naidu, B; Adarsh, N; Verma, A; Jyothi, IA; Mallick, CB; Shrivastava, N; Devasena, R; Kumari, B ... Singh, L. (2008). Maternal Footprints of Southeast Asians in North India. Human Heredity, 66 (1), 1−9.
1.1.
2008
Barik, SS; Sahani, R; Prasad, BV; Endicott, P; Metspalu, M; Sarkar, BN; Bhattacharya, S; Annapoorna, PC; Sreenath, J; Sun, D; Sanchez, JJ; Ho, SY; Chandrasekar, A; Rao, VR. (2008). Detailed mtDNA genotypes permit a reassessment of the settlement and population structure of the Andaman Islands. American Journal of Physical Anthropology, 19−27.
1.1.
2007
Tamm, E.; , Kivisild, T.; Reidla, M.; Metspalu, M.; Smith, D.G.; Mulligan, C.J.; Bravi, C.M.; Rickards, O.; Martinez-Labarga, C.; Khusnutdinova, E.K.; Fedorova, S.A.; Golubenko, M.V.; Stepanov, V.A.; Gubina, M.A.; Zhadanov, S.I.; Ossipova, L.P.; Damba, L.; Voevoda, M.I.; Dipierri, J.E.; Villems, R. ... Malhi, R.S. (2007). Beringian standstill and spread of Native American founders. PLOS ONE, 9, e829.
1.1.
2007
Chaubey, G.; Metspalu, M.; Kivisild, T.; Villems, R. (2007). Peopling of South Asia: investigating the caste-tribe continuum in India. BioEssays, 29 (1), 91−100.
3.1.
2007
Endicott, P.; Metspalu, M.; Kivisild, T. (2007). Genetic evidence on modern human dispersals in South Asia: Y chromosome and mitochondrial DNA perspectives. In: Petraglia M.-D.; Allchin,B. (Ed.). The Evolution and History of Human Populations in South Asia (229−244).. Springer. (Vertebrate Paleobiology and Paleoanthropology).
3.3.
2007
Chaubey, G.; Metspalu, M.; Villems, R.; Kivisild, T. (2007). Reply to winters. BioEssays, 29 (5), 499.
1.1.
2006
Endicott, P.; Metspalu, M.; Stringer, C.; Macaulay, V.; Cooper, A.; Sanchez, J. (2006). Multiplexed SNP Typing of Ancient DNA Clarifies the Origin of Andaman mtDNA Haplogroups amongst South Asian Tribal Populations. PLoS ONE, 1 (1), e81. DOI: 10.1371/journal.pone.0000081.
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2006
Sahoo, S.; Singh, A.; Himabindu, G.; Banerjee, J.; Sitalaximi, T.; Gaikwad, S.; Trivedi, R.; Endicott, P.; Kivisild, T.; Metspalu, M.; Villems, R.; Kashyap, VK. (2006). A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios. Proceedings of the National Academy of Sciences of the United States of America, 103 (4), 843−848.
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2006
Metspalu, Mait; Kivisild, T; Bandelt, H-J; Richards, M; Villems, R (2006). The pioneer settlement of modern humans in Asia. In: Bandelt, H-J; Macaulay, V; Richards, M. (Ed.). Human mitochondrial DNA and the evolution of Homo sapiens (179−197).. Springer Heidelberg.
1.1.
2004
Metspalu, M.; Kivisild, T.; Metspalu, E.; Parik, J.; Hudjashov, G.; Kaldma, K.; Serk, P.; Karmin, M.; Behar, DM.; Gilbert, MTP.; Endicott, P.; Mastana, S.; Papiha, SS.; Skorecki, K.; Torroni, A.; Villems, R. (2004). Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genetics, 5, 26.
1.1.
2003
Kivisild, T.; Rootsi, S.; Metspalu, M.; Mastana, S.; Kaldma, K.; Parik, J.; Metspalu, E.; Adojaan, M.; Tolk, HV.; Stepanov, V.; Golge, M.; Usanga, E.; Papiha, SS.; Cinnioglu, C.; King, R.; Cavalli-Sforza, L.; Underhill, PA.; Villems, R. (2003). The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations. The American Journal of Human Genetics, 72 (2), 313−332.
3.2.
2003
Kivisild, T.; Rootsi, S.; Metspalu, M.; Metspalu, E.; Parik, J.; Usanga, E.; Papiha, S.; Mastana, S.; Villems, R. (2003). Genetics of the language and farming spread in India. In: P. Bellwood, C. Renfrew (Ed.). Examining the farming/language dispersal hypothesis (215−222).. Cambridge: Macdonald Institute for Archaeological Research.
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2000
Kivisild, T.; Papiha, S.; Rootsi, S.; Parik, J.; Kaldma, K.; Reidla, M.; Laos, S.; Metspalu, M.; Pielberg, G.; Adojaan, M.; Mastana, S.; Wang, Y.; Gölge, M.; Demitras, H.; Schnakenberg, E.; de Stefano, G.; Geberhiwot, T.; Claustres, M.; Villems, R. (2000). An Indian Ancestry: a key for understanding human diversity in Europe and beyond. In: Renfrew, C.; Boyle, K. (Ed.). Archaeogenetics: DNA and the population prehistory of Europe (267−276). . Cambridge University Press. (Series of Monographs of the McDonald Institute for Archaeological Resarch).
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1999
Kivisild, T.; Bamshad, MJ.; Kaldma, K.; Metspalu, M.; Metspalu, E.; Reidla, M.; Laos, S.; Parik, J.; Watkins, WS.; Dixon, ME.; Papiha, SS.; Mastana, SS.; Mir, MR.; Ferak, V.; Villems, R. (1999). Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages. Current Biology, 9 (22), 1331−1334.
3.1.
1999
Kivisild, T.; Kaldma, K.; Metspalu, M.; Parik, J.; Papiha, S.; Villems, R. (1999). The Place of the Indian mtDNA Variants in the Global Network of Maternal Lineages and the Peopling of the Old World. In: Genomic Diversity (135-152). . Kluwer Academic Publishers.
14.09.2021

Mait Metspalu

https://www.etis.ee/CV/Mait_Metspalu/eng
24.08.1975
+3725283315
mait.metspalu@ut.ee
G-8671-2015

Career

Institutions and positions
01.01.2021–...   
University of Tartu, Faculty of Science and Technology, Institute of Genomics, Professor of Evolutionary Genomics (1,00)
01.03.2020–31.12.2020   
University of Tartu, Institute of Genomics, Research Professor of Evolutionary Genomics (0,50)
01.06.2018–29.02.2020   
University of Tartu, Institute of Genomics, Senior Research Fellow of Modern Population Genetics (0,50)
01.06.2018–31.12.2020   
University of Tartu, Institute of Genomics, Director (0,50)
01.01.2018–31.05.2018   
University of Tartu, Institute of Genomics, Vice Director (1,00)
02.09.2014–31.12.2017   
Estonian Biocentre, Director (0,50)
02.09.2014–31.12.2017   
Estonian Biocentre, Senior Researcher (0,50)
2012–2013   
University of California, Berkeley, Visiting Researcher (1,00)
03.05.2010–01.09.2014   
Estonian Biocentre, Research Director (0,50)
03.05.2010–01.09.2014   
Estonian Biocentre, Senior Researcher (0,50)
01.09.2009–31.12.2009   
University of Tartu, Faculty of Science and Technology (old), Institute of Molecular and Cell Biology, University of Tartu, Research Fellow (0,50)
01.08.2007–31.08.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Molecular and Cell Biology, Specialist (0,10)
01.01.2006–02.05.2010   
Estonian Biocentre, Extraordinary Senior Researcher (1,00)
01.07.2005–31.12.2005   
Estonian Biocentre, Extraordinary Researcher (1,00)
 
 
Education
2001–2005   
PhD, Molecular Biology and Evolution, University of Tartu
1999–2001   
MSc, Molecular Biology and Evolution, University of Tartu
1994–1999   
BA, Landscape Ecology and Physical Geography, University of Tartu
 
 
R&D related managerial and administrative work
2008−...   
member of the European Society for Human Genetics
2000−...   
member of the Estonian Society for Human Genetics
2014−2019   
IUT 24-1 The dawn of whole genomic era in archaeogenetics
2013−2016   
FP7-PEOPLE-2012-IRSES NEFREX Principal investigator
2012−2015   
EBC PI for Uudne melanoomi patogeneesi immuunogeneetiline iseloomustamine; TerVE; SLOTI12105T
2011−2014   
Principal investigator ETF8973 The genetic structure of Eurasian populations and signals for local adaptations. A Case study of Circum Arctic populations
2011−2015   
Coordinator; Estonian Centre for Genomics;
2008−2011   
Project manager for EBC EU grant ECOGENE
2003−2006   
Project manager for EBC EU grant GENERA
2001−2004   
Project manager for EBC EU grant GENEMILL

Qualifications

Academic degrees
Mait Metspalu, Doctor's Degree, 2005, (sup) Toomas Kivisild; Richard Villems, Through the course of prehostory in India: tracing the mtDNA trail, University of Tartu, Faculty of Biology and Geography.
Mait Metspalu, Research Master's Degree, 2001, (sup) Toomas Kivisild; Richard Villems, Common maternal legacy of Indian caste and tribal populations (Common maternal legacy of Indian caste and tribal populations), University of Tartu, Faculty of Biology and Geography.
 
 
Honours & awards
2017, Mait Metspalu, State Science award The nature and genesis of the genetic variation in humans
2000, Mait Metspalu, BA in landscape ecology and physical geography, Tartu University. "Symbiotic nitrogen fixation in Alnus-Frankia symbiosis". supervisors: Prof. Ülo Mander and sen. sci. Krista Lõhmus. The work was awarded a prize by the Estonian Academy of Sciences.
 
 
Fields of research
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.3. Genetics; CERCS CLASSIFICATION: B220 Genetics, cytogenetics
 
 
Additional information
Population genetics, evolutionary genomics, ancient-DNA

Projects in progress

Completed projects

Dissertations under supervision

Supervised dissertations

Publications

Category
Year
Publication
 
1.1.
2021
Sahakyan, Hovhannes; Margaryan, Ashot; Saag, Lauri; Karmin, Monika; Flores, Rodrigo; Haber, Marc; Kushniarevich, Alena; Khachatryan, Zaruhi; Bahmanimehr, Ardeshir; Parik, Jüri; Karafet, Tatiana; Yunusbayev, Bayazit; Reisberg, Tuuli; Solnik, Anu; Metspalu, Ene; Hovhannisyan, Anahit; Khusnutdinova, Elza K.; Behar, Doron M.; Metspalu, Mait; Yepiskoposyan, Levon ... (2021). Origin and diffusion of human Y chromosome haplogroup J1-M267. Scientific Reports, 11, 6659. DOI: 10.1038/s41598-021-85883-2.
1.1.
2020
Oras, Ester; Anderson, Jaanika; Tõrv, Mari; Vahur, Signe; Rammo, Riina; Remmer, Sünne; Mölder, Maarja; Malve, Martin; Saag, Lehti; Saage, Ragnar; Teearu-Ojakäär, Anu; Peets, Pilleriin; Tambets, Kristiina; Metspalu, Mait; Lees, David C.; Barclay, Maxwell V.L.; Hall, Martin J.R.; Ikram, Salima; Piombino-Mascali, Dario (2020). Multidisciplinary investigation of two Egyptian child mummies curated at the University of Tartu Art Museum, Estonia (Late/Graeco-Roman Periods). PLoS ONE, 15 (1), 1−27. DOI: 10.1371/journal.pone.0227446.
1.1.
2020
Pankratov, Vasili; Montinaro, Francesco; Kushniarevich, Alena; Hudjashov, Georgi; Jay, Flora; Saag, Lauri; Flores, Rodrigo; Marnetto, Davide; Seppel, Marten; Kals, Mart; Vosa, Urmo; Taccioli, Cristian; Mols, Mart; Milani, Lili; Aasa, Anto; Lawson, Daniel John; Esko, Tonu; Magi, Reedik; Pagani, Luca; Metspalu, Andres ... Metspalu, Mait (2020). Differences in local population history at the finest level: the case of the Estonian population. European Journal of Human Genetics, 28 (28, 11), 1580−1591. DOI: 10.1038/s41431-020-0699-4.
6.7.
2020
Saag, Lehti; Vasilyev, Sergey V.; Varul, Liivi; Kosorukova, Natalia V.; Gerasimov, Dmitri V.; Oshibkina, Svetlana V.; Griffith, Samuel J.; Solnik, Anu; Saag, Lauri; D'Atanasio, Eugenia; Metspalu, Ene; Reidla, Maere; Rootsi, Siiri; Kivisild; Toomas; Scheib, Christiana Lyn; Tambets, Kristiina; Kriiska Aivar; Metspalu Mait (2020). Genetic ancestry changes in Stone to Bronze Age transition in the East European plain. bioRxiv, 1−30. DOI: 10.1101/2020.07.02.184507.
1.1.
2019
Saag, Lehti; Laneman, Margot; Varul, Liivi; Malve, Martin; Valk, Heiki; Razzak, Maria A.; Shirobokov, Ivan G.; Khartanovich, Valeri I.; Mikhaylova, Elena R.; Kushniarevich, Alena; Scheib, Christiana Lyn; Solnik, Anu; Reisberg, Tuuli; Parik, Juri; Saag, Lauri; Metspalu, Ene; Rootsi, Siiri; Montinaro, Francesco; Remm, Maido; Magi, Reedik ... Tambets, Kristiina (2019). The Arrival of Siberian Ancestry Connecting the Eastern Baltic to Uralic Speakers further East. Current Biology, 29 (10), 1701−1728. DOI: 10.1016/j.cub.2019.04.026.
1.1.
2019
Yelmen, Burak; Mondal, Mayukh; Marnetto, Davide; Pathak, Ajai K.; Montinaro, Francesco; Romero, Irene Gallego; Kivisild, Toomas; Metspalu, Mait; Pagani, Luca (2019). Ancestry-Specific Analyses Reveal Differential Demographic Histories and Opposite Selective Pressures in Modern South Asian Populations. Molecular Biology and Evolution, 36 (8), 1628−1642. DOI: 10.1093/molbev/msz037.
1.1.
2019
Ongaro, Linda; Scliar, Marilia O; Flores, Rodrigo; Raveane, Alessandro; Marnetto, Davide; Sarno, Stefania; Gnecchi-Ruscone, Guido A; Alarcón-Riquelme, Marta E; Patin, Etienne; Wangkumhang, Pongsakorn; Hellenthal, Garrett; Gonzalez-Santos, Miguel; King, Roy J; Kouvatsi, Anastasia; Balanovsky, Oleg; Balanovska, Elena; Atramentova, Lubov; Turdikulova, Shahlo; Mastana, Sarabjit; Marjanovic, Damir ... Montinaro, Francesco (2019). The Genomic Impact of European Colonization of the Americas. Current Biology, 29 (23), 3974−3986.e4. DOI: 10.1016/j.cub.2019.09.076.
1.1.
2019
Tamm, Erika; Di Cristofaro, Julie; Mazieres, Stephane; Pennarun, Erwan; Kushniarevich, Alena; Raveane, Alessandro; Semino, Ornella; Chiaroni, Jacques; Pereira, Luisa; Metspalu, Mait; Montinaro, Francesco (2019). Genome-wide analysis of Corsican population reveals a close affinity with Northern and Central Italy. Scientific Reports, 9, ARTN 13581. DOI: 10.1038/s41598-019-49901-8.
1.1.
2019
Jacobs, Guy S.; Hudjashov, Georgi; Saag, Lauri; Kusuma, Pradiptajati; Darusallam, Chelzie C.; Lawson, Daniel J.; Mondal, Mayukh; Pagani, Luca; Ricaut, François-Xavier; Stoneking, Mark; Metspalu, Mait; Sudoyo, Herawati; Lansing, J. Stephen; Cox, Murray P. (2019). Multiple Deeply Divergent Denisovan Ancestries in Papuans. Cell, 177 (4), 1010−1054. DOI: 10.1016/j.cell.2019.02.035.
1.1.
2019
Yunusbaev, Ural; Valeev, Albert; Yunusbaeva, Milyausha; Kwon, Hyung Wook; Magi, Reedik; Metspalu, Mait; Yunusbayev, Bayazit (2019). Reconstructing recent population history while mapping rare variants using haplotypes. Scientific Reports, 9, ARTN 5849. DOI: 10.1038/s41598-019-42385-6.
1.1.
2019
Jeong, Choongwon; Balanovsky, Oleg; Lukianova, Elena; Kahbatkyzy, Nurzhibek; Flegontov, Pavel; Zaporozhchenko, Valery; Immel, Alexander; Wang, Chuan-Chao; Ixan, Olzhas; Khussainova, Elmira; Bekmanov, Bakhytzhan; Zaibert, Victor; Lavryashina, Maria; Pocheshkhova, Elvira; Yusupov, Yuldash; Agdzhoyan, Anastasiya; Koshel, Sergey; Bukin, Andrei; Nymadawa, Pagbajabyn; Turdikulova, Shahlo ... Krause, Johannes (2019). The genetic history of admixture across inner Eurasia. Nature Ecology & Evolution, 3 (6), 966−976. DOI: 10.1038/s41559-019-0878-2.
1.1.
2019
Raveane, A; Aneli, S; Montinaro, F; Athanasiadis, G; Barlera, S; Birolo, G; Boncoraglio, G; Di Blasio, A M; Di Gaetano, C; Pagani, L; Parolo, S; Paschou, P; Piazza, A; Stamatoyannopoulos, G; Angius, A; Brucato, N; Cucca, F; Hellenthal, G; Mulas, A; Peyret-Guzzon, M ... Capelli, C (2019). Population structure of modern-day Italians reveals patterns of ancient and archaic ancestries in Southern Europe. Science Advances, 5 (9), eaaw3492−eaaw3492. DOI: 10.1126/sciadv.aaw3492.
1.1.
2019
Järve, Mari; Saag, Lehti; Scheib, Christiana Lyn; Pathak, Ajai K; Montinaro, Francesco; Pagani, Luca; Flores, Rodrigo; Guellil, Meriam; Saag, Lauri; Tambets, Kristiina; Kushniarevich, Alena; Solnik, Anu; Varul, Liivi; Zadnikov, Stanislav; Petrauskas, Oleg; Avramenko, Maryana; Magomedov, Boris; Didenko, Serghii; Toshev, Gennadi; Bruyako, Igor ... Villems, Richard (2019). Shifts in the Genetic Landscape of the Western Eurasian Steppe Associated with the Beginning and End of the Scythian Dominance. Current Biology, 29 (14), 2430−2452. DOI: 10.1016/j.cub.2019.06.019.
6.8.
2019
Tätte, Kai; Pagani, Luca; Pathak, Ajai K; Kõks, Sulev; Ho Duy, Binh; Ho, Xuan Dung; Sultana, Gazi Nurun Nahar; Sharif, Mohd Istiaq; Asaduzzaman, Md; Behar, Doron M; Hadid, Yarin; Villems, Richard; Chaubey, Gyaneshwer; Kivisild, Toomas; Metspalu, Mait (2019). Author Correction: The genetic legacy of continental scale admixture in Indian Austroasiatic speakers. Scientific Reports, 9 (1), 6104−6104. DOI: 10.1038/s41598-019-42195-w.
1.1.
2018
Hudjashov, Georgi; Endicott, Phillip; Post, Helen; Nagle, Nano; Ho, Simon Y W; Lawson, Daniel J; Reidla, Maere; Karmin, Monika; Rootsi, Siiri; Metspalu, Ene; Saag, Lauri; Villems, Richard; Cox, Murray P; Mitchell, R John; Garcia-Bertrand, Ralph L; Metspalu, Mait; Herrera, Rene J (2018). Investigating the origins of eastern Polynesians using genome-wide data from the Leeward Society Isles. Scientific Reports, 8 (1), 1823−1823.10.1038/s41598-018-20026-8.
1.1.
2018
Metspalu, Mait; Mondal, Mayukh; Chaubey, Gyaneshwer (2018). The genetic makings of South Asia. 53, 128−133. DOI: 10.1016/j.gde.2018.09.003.
1.1.
2018
Tambets, Kristiina; Yunusbayev, Bayazit; Hudjashov, Georgi; Ilumäe, Anne-Mai; Rootsi, Siiri; Honkola, Terhi; Vesakoski, Outi; Atkinson, Quentin; Skoglund, Pontus; Kushniarevich, Alena; Litvinov, Sergey; Reidla, Maere; Metspalu, Ene; Saag, Lehti; Rantanen, Timo; Karmin, Monika; Parik, Jüri; Zhadanov, Sergey I; Gubina, Marina; Damba, Larisa D ... Metspalu, Mait (2018). Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations. Genome Biology, 19 (1), 139−139. DOI: 10.1186/s13059-018-1522-1.
1.1.
2018
Pathak, Ajai K; Kadian, Anurag; Kushniarevich, Alena; Montinaro, Francesco; Mondal, Mayukh; Ongaro, Linda; Singh, Manvendra; Kumar, Pramod; Rai, Niraj; Parik, Jüri; Metspalu, Ene; Rootsi, Siiri; Pagani, Luca; Kivisild, Toomas; Metspalu, Mait; Chaubey, Gyaneshwer; Villems, Richard (2018). The Genetic Ancestry of Modern Indus Valley Populations from Northwest India. The American Journal of Human Genetics, 103 (6), 918−929. DOI: 10.1016/j.ajhg.2018.10.022.
1.1.
2018
Scheib, C L; Li, Hongjie; Desai, Tariq; Link, Vivian; Kendall, Christopher; Dewar, Genevieve; Griffith, Peter William; Mörseburg, Alexander; Johnson, John R; Potter, Amiee; Kerr, Susan L; Endicott, Phillip; Lindo, John; Haber, Marc; Xue, Yali; Tyler-Smith, Chris; Sandhu, Manjinder S; Lorenz, Joseph G; Randall, Tori D; Faltyskova, Zuzana ... Kivisild, Toomas (2018). Ancient human parallel lineages within North America contributed to a coastal expansion. Science, 360 (6392), 1024−1027. DOI: 10.1126/science.aar6851.
1.1.
2018
Jagoda, Evelyn; Lawson, Daniel J.; Wall, Jeffrey D.; Lambert, David; Muller, Craig; Westaway, Michael; Leavesley, Matthew; Capellini, Terence D.; Lahr, Marta Mirazon; Gerbault, Pascale; Thomas, Mark G.; Migliano, Andrea Bamberg; Willerslev, Eske; Metspalu, Mait; Pagani, Luca (2018). Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans. Molecular Biology and Evolution, 35 (3), 623−630.10.1093/molbev/msx314.
6.3.
2018
Oras, E.; Anderson, J.; Rammo, R.; Tõrv, M.; Saag, L.; Vahur, S.; Rannamäe, E.; Teearu-Ojakäär, A.; Heikkilä, R. K.; Ehrlich, F.; Malve, M.; Metspalu, M.; Mölder, M.; Peets, P.; Remmer, S.; Saage, R.; Saarma, U.; Selin, A.; Tambets, K. (2018). Muumiapalavik Tartu Ülikoolis. Tutulus: Eesti arheoloogia aastakiri, 2018, 11−15.
6.3.
2018
Oras, Ester; Anderson, Jaanika; Rammo, Riina; Tõrv, Mari; Saag, Lehti; Vahur, Signe; Rannamäe, Eve; Teearu-Ojakäär, Anu; Heikkilä, Raija Katarina; Ehrlich, Freydis; Malve, Martin; Metspalu, Mait; Mölder, Maarja; Peets, Pilleriin; Remmer, Sünne; Saage, Ragnar; Saarma, Urmas; Selin, Argo; Tambets, Kristiina (2018). Muumiapalavik Tartu Ülikoolis. Tutulus: Eesti arheoloogia aastakiri, 7. aastakäik, 11−15.
6.4.
2018
Jääts, Indrek; Leete, Art; Arukask, Madis; Karm, Svetlana; Koosa, Piret; Kuznetsov, Nikolai; Metspalu, Mait; Tambets, Kristiina, Villems, Richard (2018). Uurali kaja: Soome-ugri ja samojeedi rahvad. Tartu: Eesti Rahva Muuseum.
1.1.
2017
Sahakyan, H; Kashani, BH; Tamang, R; Kushniarevich, A; Francis, A; Costa, MD; Pathak, AK; …Parik, J; …Metspalu, E; Pennarun, E; Karmin, M; Tamm, E; Tambets, K; …Reisberg, T; Reidla, M; Achilli, A; Olivieri, A; …Litvinov, S; Bermisheva, M; Khusnutdinova, E ... Villems, R. (2017). Origin and spread of human mitochondrial DNA haplogroup U7. Scientific Reports, 7, Article number: 46044. DOI: 10.1038/srep46044.
1.1.
2017
Saag, L.; Varul, L.; Scheib, CL.; Stenderup, J.; Allentoft, ME.; Saag, L.; Pagani, L.; Reidla, M.; Tambets, K.; Metspalu, E.; Kriiska, A.; Willerslev, E.; Kivisild, T.; Metspalu, M. (2017). Extensive farming in Estonia started through a sex-biased migration from the Steppe. Current Biology, 27 (14), 2187−2193. DOI: 10.1016/j.cub.2017.06.022.
1.1.
2017
Chaubey, Gyaneshwer; Ayub, Qasim; Rai, Niraj; Prakash, Satya; Mushrif-Tripathy, Veena; Mezzavilla, Massimo; Pathak, Ajai Kumar; Tamang, Rakesh; Firasat, Sadaf; Reidla, Maere; Karmin, Monika; Rani, Deepa Selvi; Reddy, Alla G; Parik, Jüri; Metspalu, Ene; Rootsi, Siiri; Dalal, Kurush; Khaliq, Shagufta; Mehdi, Syed Qasim; Singh, Lalji ... Thangaraj, Kumarasamy (2017). "Like sugar in milk": reconstructing the genetic history of the Parsi population. Genome Biology, 18 (1), 110−110.10.1186/s13059-017-1244-9.
1.1.
2017
Chaubey, G; Tamang, R; Pennarun, E; Dubey, P; Rai, N; Upadhyay, RK; Meena, RP; Patel, JR; van Driem, G; Thangaraj, K; Metspalu, M; Villems R. (2017). Reconstructing the population history of the largest tribe of India: the Dravidian speaking Gond. European Journal of Human Genetics, 25(4), 493−498.10.1038/ejhg.2016.198.
1.1.
2017
Behar, Doron M; Saag, Lauri; Karmin, Monika; Gover, Meir G; Wexler, Jeffrey D; Sanchez, Luisa Fernanda; Greenspan, Elliott; Kushniarevich, Alena; Davydenko, Oleg; Sahakyan, Hovhannes; Yepiskoposyan, Levon; Boattini, Alessio; Sarno, Stefania; Pagani, Luca; Carmi, Shai; Tzur, Shay; Metspalu, Ene; Bormans, Concetta; Skorecki, Karl; Metspalu, Mait ... Villems, Richard (2017). The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome. Scientific Reports, 7 (1), 14969−14969.10.1038/s41598-017-14761-7.
1.1.
2017
Eichstaedt, Christina A; Pagani, Luca; Antao, Tiago; Inchley, Charlotte E; Cardona, Alexia; Mörseburg, Alexander; Clemente, Florian J; Sluckin, Timothy J; Metspalu, Ene; Mitt, Mario; Mägi, Reedik; Hudjashov, Georgi; Metspalu, Mait; Mormina, Maru; Jacobs, Guy S; Kivisild, Toomas (2017). Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations. Scientific Reports, 7 (1), 13042−13042.10.1038/s41598-017-13382-4.
1.1.
2017
Bortolini, Eugenio; Pagani, Luca; Crema, Enrico R; Sarno, Stefania; Barbieri, Chiara; Boattini, Alessio; Sazzini, Marco; da Silva, Sara Graça; Martini, Gessica; Metspalu, Mait; Pettener, Davide; Luiselli, Donata; Tehrani, Jamshid J (2017). Inferring patterns of folktale diffusion using genomic data. Proceedings of the National Academy of Sciences, 114 (34), 9140−9145.10.1073/pnas.1614395114.
1.1.
2017
Bortolini, Eugenio; Pagani, Luca; Crema, Enrico R; Sarno, Stefania; Barbieri, Chiara; Boattini, Alessio; Sazzini, Marco; da Silva, Sara Graça; Martini, Gessica; Metspalu, Mait; Pettener, Davide; Luiselli, Donata; Tehrani, Jamshid J (2017). Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales. Proceedings of the National Academy of Sciences, 114 (41), E8556−E8556.10.1073/pnas.1715139114.
5.2.
2017
Varul, Liivi; Tõrv, Mari; Kriiska, Aivar; Saag, Lehti; Metspalu, Mait; Lõugas, Lembi (2017). A case study of a secondary burial from Corded Ware Culture in Estonia - problems and results. In: Jos Bazelmans and Klinkhamer Group (Ed.). Building Bridges: Abstract book of the 23rd Annual Meeting of the European Association of Archaeologists 2017 (397). Annual Meeting of the European Association of Archaeologists in Maastricht, 30.08-3.09.2017.
1.1.
2016
Pankratov, Vasili; Litvinov, Sergei; Kassian, Alexei; Shulhin, Dzmitry; Tchebotarev, Lieve; Yunusbayev, Bayazit; Möls, Märt; Sahakyan, Hovhannes; Yepiskoposyan, Levon; Rootsi, Siiri; Metspalu, Ene; Golubenko, Maria; Ekomasova, Natalia; Akhatova, Farida; Khusnutdinova, Elza; Heyer, Evelyne; Endicott, Phillip; Derenko, Miroslava; Malyarchuk, Boris; Metspalu, Mait ... Kushniarevich, Alena (2016). East Eurasian ancestry in the middle of Europe: genetic footprints of Steppe nomads in the genomes of Belarusian Lipka Tatars. Scientific Reports, 6, -−-. DOI: 10.1038/srep30197.
1.1.
2016
Malaspinas, Anna-Sapfo; Westaway, Michael C; Muller, Craig; Sousa, Vitor C; Lao, Oscar; Alves, Isabel; Bergström, Anders; Athanasiadis, Georgios; Cheng, Jade Y; Crawford, Jacob E; Heupink, Tim H; Macholdt, Enrico; Peischl, Stephan; Rasmussen, Simon; Schiffels, Stephan; Subramanian, Sankar; Wright, Joanne L; Albrechtsen, Anders; Barbieri, Chiara; Dupanloup, Isabelle ... Willerslev, Eske (2016). A genomic history of Aboriginal Australia. Nature, 538 (7624), 207−214. DOI: 10.1038/nature18299.
1.1.
2016
Inchley, Charlotte E; Larbey, Cynthia D A; Shwan, Nzar A A; Pagani, Luca; Saag, Lauri; Antão, Tiago; Jacobs, Guy; Hudjashov, Georgi; Metspalu, Ene; Mitt, Mario; Eichstaedt, Christina A; Malyarchuk, Boris; Derenko, Miroslava; Wee, Joseph; Abdullah, Syafiq; Ricaut, François-Xavier; Mormina, Maru; Mägi, Reedik; Villems, Richard; Metspalu, Mait ... Kivisild, Toomas (2016). Selective sweep on human amylase genes postdates the split with Neanderthals. Scientific Reports, 6, 37198−37198. DOI: 10.1038/srep37198.
1.1.
2016
Mallick, Swapan; Li, Heng; Lipson, Mark; Mathieson, Iain; Gymrek, Melissa; Racimo, Fernando; Zhao, Mengyao; Chennagiri, Niru; Nordenfelt, Susanne; Tandon, Arti; Skoglund, Pontus; Lazaridis, Iosif; Sankararaman, Sriram; Fu, Qiaomei; Rohland, Nadin; Renaud, Gabriel; Erlich, Yaniv; Willems, Thomas; Gallo, Carla; Spence, Jeffrey P ... Reich, David (2016). The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature, 538 (7624), 201−206. DOI: 10.1038/nature18964.
1.1.
2016
Mörseburg, Alexander; Pagani, Luca; Ricaut, Francois-Xavier; Yngvadottir, Bryndis; Harney, Eadaoin; Castillo, Cristina; Hoogervorst, Tom; Antao, Tiago; Kusuma, Pradiptajati; Brucato, Nicolas; Cardona, Alexia; Pierron, Denis; Letellier, Thierry; Wee, Joseph; Abdullah, Syafiq; Metspalu, Mait; Kivisild, Toomas (2016). Multi-layered population structure in Island Southeast Asians. European Journal of Human Genetics, 24 (11), 1605−1611. DOI: 10.1038/ejhg.2016.60.
1.1.
2015
Sudmant, P.H.; Mallick, S.; Nelson, B.J.; Hormozdiari, F.; Krumm, N.; Huddleston, J.; Coe, B.P.; Baker, C.; Nordenfelt, S.; Bamshad, M.; Jorde, L.B.; Posukh, O.L.; Sahakyan, H.; Watkins, W.S.; Yepiskoposyan, L.; Abdullah, M.S.; Bravi, C.M.; Capelli, C.; Hervig, T.; Wee, J.T. ... Eichler, E.E. (2015). Global diversity, population stratification, and selection of human copy number variation. Science, 349 (6253), 1181. DOI: 10.1126/science.aab3761.
1.1.
2015
Raghavan, M.; Steinrücken, M.; Harris, K.; Schiffels, S.; Rasmussen, S.; DeGiorgio, M.; Albrechtsen, A.; Valdiosera, C.; Ávila-Arcos, M.C.; Malaspinas, A.S.; Eriksson, A.; Moltke, I.; Metspalu, M.; Homburger, J.R.; Wall, J.; Cornejo, O.E.; Moreno-Mayar, J.V.; Korneliussen, T.S.; Pierre, T.; Rasmussen, M. ... Willerslev, E. (2015). Genomic evidence for the Pleistocene and recent population history of Native Americans. Science, 349 (6250), aab3884. DOI: 10.1126/science.aab3884.
1.1.
2015
Allentoft, M.E.; Sikora, M.; Sjögren, K.G.; Rasmussen, S.; Rasmussen, M.; Stenderup, J.; Damgaard, P.B.; Schroeder, H.; Ahlström, T.; Vinner, L.; Malaspinas, A.S.; Margaryan, A.; Higham, T.; Chivall, D.; Lynnerup, N.; Harvig, L.; Baron, J.; Della Casa, P.; Dąbrowski, P.; Duffy, P.R. ... Willerslev, E. (2015). Population genomics of Bronze Age Eurasia. Nature, 522 (7555), 167−72. DOI: 10.1038/nature14507.
1.1.
2015
Yunusbayev, B.; Metspalu, M.; Metspalu, E.; Valeev, A.; Litvinov, S.; Valiev, R.; Akhmetova, V.; Balanovska, E.; Balanovsky, O.; Turdikulova, S.; Dalimova, D.; Nymadawa, P.; Bahmanimehr, A.; Sahakyan, H.; Tambets, K.; Fedorova, S.; Barashkov, N.; Khidiatova, I.; Mihailov, E.; Khusainova, R. ... Villems, R. (2015). The Genetic Legacy of the Expansion of Turkic-Speaking Nomads Across Eurasia. PLoS Genetics, 11 (4), e1005068. DOI: 10.1371/journal.pgen.1005068.
1.1.
2015
Kushniarevich, A.; Utevska, O.; Chuhryaeva, M.; Agdzhoyan, A.; Dibirova, K.; Uktveryte, I.; Möls, M.; Mulahasanovic, L.; Pshenichnov, A.; Frolova, S.; Shanko, A.; Metspalu, E.; Reidla, M.; Tambets, K.; Tamm, E.; Koshel, S.; Zaporozhchenko, V.; Atramentova, L.; Kučinskas, V.; Davydenko, O. ... Balanovsky, O. (2015). Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. PLoS ONE, 10 (9), e0135820. DOI: 10.1371/journal.pone.0135820.
1.1.
2015
Rasmussen, Simon; Allentoft, Morten Erik; Nielsen, Kasper; Orlando, Ludovic; Sikora, Martin; Sjögren, Karl-Göran; Pedersen, Anders Gorm; Schubert, Mikkel; Van Dam, Alex; Kapel, Christian Moliin Outzen; Nielsen, Henrik Bjørn; Brunak, Søren; Avetisyan, Pavel; Epimakhov, Andrey; Khalyapin, Mikhail Viktorovich; Gnuni, Artak; Kriiska, Aivar; Lasak, Irena; Metspalu, Mait; Moiseyev, Vyacheslav ... Willerslev, Eske (2015). Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago. Cell, 163 (3), 571−582. DOI: 10.1016/j.cell.2015.10.009.
1.1.
2015
Karmin, Monika; Saag, Lauri; Vicente, Mário; Wilson Sayres, Melissa A; Järve, Mari; Talas, Ulvi Gerst; Rootsi, Siiri; Ilumäe, Anne-Mai; Mägi, Reedik; Mitt, Mario; Pagani, Luca; Puurand, Tarmo; Faltyskova, Zuzana; Clemente, Florian; Cardona, Alexia; Metspalu, Ene; Sahakyan, Hovhannes; Yunusbayev, Bayazit; Hudjashov, Georgi; DeGiorgio, Michael ... Kivisild, Toomas (2015). A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome Research, 25 (4), 459−466. DOI: 10.1101/gr.186684.114.
1.1.
2014
Raghavan, M.; DeGiorgio, M.; Albrechtsen, A.; Moltke, I.; Skoglund, P.; Korneliussen, T.S.; Grønnow, B.; Appelt, M.; Gulløv, H.C.; Friesen, T.M.; Fitzhugh, W.; Malmström, H.; Rasmussen, S.; Olsen, J.; Melchior, L.; Fuller, B.T.; Fahrni, S.M.; Stafford, T. Jr.; Grimes, V.; Renouf, M.A. ... Willerslev, E. (2014). The genetic prehistory of the New World Arctic. Science, 1255832.
1.1.
2014
Clemente, FJ.; Cardona, A.; Inchley, CE.; Peter, BM.; Jacobs, G.; Pagani, L.; Lawson, DJ.; Antao, T.; Vicente, M.; Mitt, M.; DeGiorgio, M.; Faltyskova, Z.; Xue, YL.; Ayub, Q.; Szpak, M.; Magi, R.; Eriksson, A.; Manica, A.; Raghavan, M.; Rasmussen, M. ... Kivisild, T. (2014). A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. The American Journal of Human Genetics, 95 (5), 584−589.10.1016/j.ajhg.2014.09.016.
1.1.
2014
Lazaridis, I.; Patterson, N.; Mittnik, A.; Renaud, G.; Mallick, S.; Kirsanow, K.; Sudmant, P.H.; Schraiber, J.G.; Castellano, S.; Lipson, M.; Berger, B.; Economou, C.; Bollongino, R.; Fu, Q.; Bos, K.I.; Nordenfelt, S.; Li, H.; de Filippo, C.; Prüfer, K.; Sawyer, S. ... Krause, J. (2014). Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature, 409−13.
1.1.
2014
Cardona, A; Pagani, L; Antao, T; Lawson, DJ; Eichstaedt, CA, Yngvadottir, B; Shwe, MT; Wee, J; Romero, IG; Raj, S; Metspalu, M; Villems, R; Willerslev, E; Tyler-Smith, C; Malyarchuk, BA; Derenko, MV; Kivisild, T. (2014). Genome-wide analysis of cold adaptation in indigenous siberian populations. PLoS ONE, 9 (5), e98076.10.1371/journal.pone.0098076.
1.1.
2014
Chaubey, G.; Singh, M.; Crivellaro, F.; Tamang, R.; Nandan, A.; Singh, K.; Sharma, V.K.; Pathak, A.K.; Shah, A.M.; Sharma, V.; Singh, V.K.; Selvi Rani, D.; Rai, N.; Kushniarevich, A.; Ilumäe, A.M.; Karmin, M.; Phillip, A.; Verma, A.; Prank, E.; Singh, V.K. ... Thangaraj, K. (2014). Unravelling the distinct strains of Tharu ancestry. European Journal of Human Genetics, 22 (12), 1404−1412.10.1038/ejhg.2014.36.
1.1.
2014
Rasmussen, M.; Anzick, S.L; Waters, M.R; Skoglund, P.; l DeGiorgio, M; Stafford, T.W. Jr; Rasmussen, S.; Moltke, I.; Albrechtsen, A.; Doyle, S.M.; Poznik, G.D.; Gudmundsdottir, V.; Yadav, R.; Malaspinas, A.-S.; Stockton White V, S.; Allentoft, M.E.; Cornejo, O.E.; Tambets, K.; Eriksson, A.; Heintzman, P.D. ... Willerslev, E. (2014). The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature, 225−29.
1.1.
2014
Raghavan, M.; Skoglund, P.; Graf, K.E.; Metspalu, M.; Albrechtsen, A.; Moltke, I.; Rasmussen, S.; Stafford, T.W. Jr.; Orlando, L.; Metspalu, E.; Karmin, M.; Tambets, K.; Rootsi, S.; Mägi, R.; Campos, P.F., Balanovska, E., Balanovsky, O., Khusnutdinova, E., Litvinov, S.; Osipova, L.P.; Fedorova, S.A.; Voevoda, M.I.; DeGiorgio, M.; Sicheritz-Ponten, T. ... Willerslev, E. (2014). Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature, 505 (7481), 87−91. DOI: 10.1038/nature12736.
1.1.
2013
Rootsi, S.; Behar, D.; Järve, M.; Lin, AA.; Myres, NM.; Passarelli, B.; Poznik, D.; Tzu, S.; Sahakyan, H.; Pathak, A.; Metspalu, M.; Grugni, V.; Semino, O.; Metspalu, E.; Skorecki, K.; Villems, R.; Kivisild, T.; Underhill, P. (2013). Phylogenetic applications of whole Y-chromosome sequences and the Near Eastern origin of Ashkenazi Levites. Nature Communications, 4, Article 2928.10.1038/ncomms3928.
1.1.
2013
Behar, DM.; Metspalu, M.; Baran, Y.; Kopelman, NM.; Yunusbayev, B.; Gladstein, A.; Tzur, S.; Sahakyan, H.; Bahmanimehr, A.; Yepiskoposyan, L.; Tambets, K.; Khusnutdinova, EK.; Kushniarevich, A.; Malanovsky, O.; Balanovska, E.; Kovacevic, L.; Marjanovic, D.; Mihailov, E.; Kouvatsi, A.; Traintaphyllidis, C. ... Rosenberg, N. (2013). No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews. Human Biology, 85 (6), 859−900.
1.1.
2013
Christofaro, J.; Pennarun, E.; Mazires, S.; Meyers, NM.; Lin, AA.; Temori, SA.; Metspalu, M.; Metspalu, E.; Witzel, M.; King, RJ.; Underhill, PA.; Villems, R.; Chiaroni, J. (2013). Afghan Kindu Kush where Eurasian sub-continent gene flows converge. PLoS ONE, 8 (10), e76748.10.1371/journal.pone.0076748.
1.1.
2013
Basu Mallick, C; Iliescu, FM; Möls, M, Hill; S, Tamang, R; Chaubey, G; Goto, R; Ho, SY; Gallego Romero, I; Crivellaro, F; Hudjashov, G; Rai, N; Metspalu, M; Mascie-Taylor, CG; Pitchappan, R; Singh, L; Mirazon-Lahr, M; Thangaraj, K; Villems, R; Kivisild, T. (2013). The Light Skin Allele of SLC24A5 in South Asians and Europeans Shares Identity by Descent. PLoS Genetics, 9 (11), e1003912. DOI: 10.1371/journal.pgen.1003912.
1.1.
2013
Migliano, A.; Romero, I.; Metspalu, M.; Leavesley, M.; Pagani, L.; Antao, T.; Huang, D.; Sherman, B.; Siddle, K.; Scoles, C.; Hudjashov, G.; Kaitokai, E.; Mandui, H.; Babalu, A.; Belatti, M.; Cagan, A.; Hopkinshow, B.; Show, C.; Tabbada, K.; Nelis, M. ... Kivisild, T. (2013). Evolution of the pygmy phenotype: evidence of positive selection from genome-wide scans in African, Asian and Melanesian pygmies. Human Biology, 85, 251−284.
1.1.
2013
Fedorova, Sardana; Reidla, Maere; Metspalu, Ene; Metspalu, Mait; Rootsi, Siiri; Tambets, Kristiina; Trofimova, Natalya; Zhadanov, Sergey; Hooshiar Kashani, Basharak; Olivieri, Anna; Osipova, Ludmila; Platonov, Fedor; Tomsky, Mikhail; Khusnutdinova, Elza; Torroni, Antonio; Villems, Richard (2013). Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia. BMC Evolutionary Biology, 127. DOI: 10.1186/1471-2148-13-127.
1.1.
2013
Esko, T; Mezzavilla, M; Nelis, M; Borel, C; Debniak, T; Jakkula, E; Julia, A; Karachanak, S; Khrunin, A; Kisfali, P; Krulisova, V; Aušrelé, Kučinskiené, Z; Rehnström, K; Traglia, M; Nikitina-Zake, L; Zimprich, F; Antonarakis, SE; Estivill, X; Glavač, D; Gut, I ... D'Adamo, P (2013). Genetic characterization of northeastern Italian population isolates in the context of broader European genetic diversity. European Journal of Human Genetics, 21 (6), 659−665. DOI: 10.1038/ejhg.2012.229.
1.1.
2012
Pennarun, E.; Kivisild, T.; Metspalu, E.; Metspalu, M.; Reisberg, T.; Behar, D.M.; Jones, S.; Villems, R. (2012). Divorcing the Late Upper Palaeolitic Demographic Histories of mtDNA Haplogroupa M1 and U6 in Africa. BMC Evolutionary Biology, 12, 234.10.1186/1471-2148-12-234.
1.1.
2012
Behar, D.M.; van Oven, M.; Rosset, S.; Metspalu, M.; Loogvali, E.L.; Silva, N.M.; Kivisild, T.; Torroni, A.; Villems, R. (2012). A "Copernican" Reassessment of the Human Mitochondrial DNA Tree from its Root. American Journal of Human Genetics, 90 (4), 675−84.
1.1.
2012
Yunusbayev, B.; Metspalu, M.; Järve, M.; Kutujev, I.; Rootsi, S.; Metspalu, E.; Behar, D. M.; Varendi, K.; Sahakyan, H.; Khusainova, R.; Yepiskoposyan, L.; Khusnutdinova, E. K.; Underhill, P. A.; Kivisild, T.; Villems, R. (2012). The Caucasus as an asymmetric semipermeable barrier to ancient human migrations. Molecular Biology and Evolution, 29(1), 359−65.
1.1.
2012
Gallego Romero, I; Basu Mallick, C; Liebert, A; Crivellaro, F; Chaubey, G; Itan, Y; Metspalu, M; Eaaswarkhanth, M; Pitchappan, R; Villems, R; Reich, D; Singh, L; Thangaraj, K; Thomas, MG; Swallow, DM; Mirazon Lahr, M; Kivisild, T. (2012). Herders of Indian and European Cattle Share Their Predominant Allele for Lactase Persistence. Molecular Biology and Evolution, 29(1), 249−60.
1.1.
2011
Metspalu, M.; Romero, IG.; Yunusbayev, B.; Chaubey, G.; Mallick, CB.; Hudjashov, G.; Nelis, M.; Mägi, R.; Metspalu, E.; Remm, M.; Pitchappan, R.; Singh, L.; Thangaraj, K.; Villems, R.; Kivisild, T. (2011). Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia. The American Journal of Human Genetics, 89 (6), 731−44. DOI: 10.1016/j.ajhg.2011.11.010.
1.1.
2011
Chaubey, Gyaneshwer; Metspalu, Mait; Choi, Ying; Mägi, Reedik; Gallego Romero, Irene; Soares, Pedro; van Oven, Mannis; Behar, Doron M; Rootsi, Siiri; Hudjashov, Georgi; Basu Mallick, Chandana; Karmin, Monika; Nelis, Mari; Parik, Jüri; Goverdhana Reddy, Alla; Metspalu, Ene; vanDriem, George; Xue, Yali; Tyler-Smith, Chris; Thangaraj, Kumarasamy ... Kivisild, Toomas. (2011). Population Genetic Structure in Indian Austroasiatic speakers: The Role of Landscape Barriers and Sex-specific Admixture. Molecular Biology and Evolution, 28(2), 1013−24.
1.1.
2011
Rasmussen, M.; Guo, X.; Wang, Y.; Lohmueller, K. E.; Rasmussen, S.; Albrechtsen, A.; Skotte, L.; Lindgreen, S.; Metspalu, M.; Jombart, T.; Kivisild, T.; Zhai, W.; Erikson, A.; Manica, A.; Orlando, L.; De La Vega, F.; Tridico, S.; Metspalu, E.; Nielsen, K.; Avila-Arcos, M.C. ... Willerslev, E. (2011). An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. Science, 334(6052), 94−8.
1.1.
2010
Behar, Doron M; Yunusbayev, Bayazit; Metspalu, Mait; Metspalu, Ene; Rosset, Saharon; Parik, Jüri; Rootsi, Siiri; Chaubey, Gyaneshwer; Kutuev, Ildus; Yudkovsky, Guennady; Khusnutdinova, K. Elza; Balanovsky, Oleg; Semino, Ornella; Pereira, Luisa; Comas, David; Gurwitz, David; Bonne-Tamir, Batsheva; Parfitt, Tudor; Hammer, Michael F.; Skorecki, Karl ... Villems, Richard. (2010). The genome-wide structure of the Jewish people. Nature, 238−42. DOI: 10.1038/nature09103.
1.1.
2010
Underhill, P.A.; Myres, N.M.; Rootsi, S.; Metspalu, M.; Zhivotovsky, L.A.; King, R.J.; Lin, A.A.; Chow, C.E.; Semino, O.; Battaglia, V.; Kutuev, I.; Järve, M.; Chaubey, G.; Ayub, Q.; Mohyuddin, A.; Mehdi, S.Q.; Sengupta, S.; Rogaev, E.I.; Khusnutdinova, E.K.; Pshenichnov, A. ... Kivisild, T. (2010). Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. European Journal of Human Genetics, 18 (4), 479−484. DOI: 10.1038/ejhg.2009.194.
1.1.
2010
Rasmussen, M.; Li, Y.; Lindgreen, S.; Pedersen, J.S.; Albrechtsen, A.; Moltke, I.; Metspalu, M.; Metspalu, E.; Kivisild, T.; Gupta, R.; Bertalan, M.; Nielsen, K.; Gilbert, M.T.; Wang, Y.; Raghavan, M.; Campos, P.F.; Kamp, H.M.; Wilson, A.S.; Gledhill, A.; Tridico, S. ... Willerslev, E. (2010). Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature, 757−762.10.1038/nature08835.
1.1.
2009
Petraglia, M; Clarkson, C; Boivin, N; Haslam, M; Korisettar, R; Chaubey, G; Ditchfield, P; Fuller, D; James, H; Jones, S; Kivisild, T; Koshy, J; LahrM, M; Metspalu, M; Roberts, R; ArnoldL, L. (2009). Population increase and environmental deterioration correspond with microlithic innovations in South Asia ca. 35,000 years ago. Proceedings of the National Academy of Sciences, 106 (30), 12261−12266. DOI: 10.1073/pnas.0810842106.
1.1.
2008
Chaubey, G.; Karmin, M.; Metspalu, E.; Metspalu, M.; Selvi-Rani, D.; Singh, V.K.; Parik, J.; Solnik, A.; Naidu, B.P.; Kumar, A.; Adarsh, N.; Mallick, C.B., Trivedi, B.; Prakash, S.; Reddy, R.; Shukla, P.; Bhagat, S.; Verma, S.; Vasnik, S.; Khan, I.; Barwa, A. ... Villems, R. (2008). Phylogeography of mtDNA haplogroup R7 in the Indian peninsula. BMC Evolutionary Biology, 8 (227), x−x. DOI: 10.1186/1471-2148-8-227.
1.1.
2008
Chaubey, G.; Metspalu, M.; Karmin, M.; Thangaraj, K.; Rootsi, S.; Parik, J.; Solnik, A.; Rani, D.S.; Singh, V.K.; Naidu, B.P.; Reddy, A.G.; Metspalu, E.; Singh, L.; Kivisild, T.; Villems, R. (2008). Language Shift by Indigenous Population: A Model Genetic Study in South Asia. International Journal of Human Genetics, 8, 41−50.
1.1.
2008
Gilbert, M.T.; Kivisild, T.; Grønnow, B.; Andersen, P.K.; Metspalu, E.; Reidla, M.; Tamm, E.; Axelsson, E.; Götherström, A.; Campos, P.F.; Rasmussen, M.; Metspalu, M.; Higham, T.F.; Schwenninger, J.L.; Nathan, R.; De, Hoog, C.J.; Koch, A.; Møller, L.N.; Andreasen, C.; Meldgaard, M. ... Willerslev, E. (2008). Paleo-Eskimo mtDNA Genome Reveals Matrilineal Discontinuity in Greenland. Science, 1787−1789.
1.1.
2008
Thangaraj, K; Chaubey, G; Kivisild, T; Selvi Rani, D; Singh, VK; Ismail, T; Carvalho-Silva, D; Metspalu, M; Bhaskar, LV; Reddy, AG; Chandra, S; Pande, V; Prathap Naidu, B; Adarsh, N; Verma, A; Jyothi, IA; Mallick, CB; Shrivastava, N; Devasena, R; Kumari, B ... Singh, L. (2008). Maternal Footprints of Southeast Asians in North India. Human Heredity, 66 (1), 1−9.
1.1.
2008
Barik, SS; Sahani, R; Prasad, BV; Endicott, P; Metspalu, M; Sarkar, BN; Bhattacharya, S; Annapoorna, PC; Sreenath, J; Sun, D; Sanchez, JJ; Ho, SY; Chandrasekar, A; Rao, VR. (2008). Detailed mtDNA genotypes permit a reassessment of the settlement and population structure of the Andaman Islands. American Journal of Physical Anthropology, 19−27.
1.1.
2007
Tamm, E.; , Kivisild, T.; Reidla, M.; Metspalu, M.; Smith, D.G.; Mulligan, C.J.; Bravi, C.M.; Rickards, O.; Martinez-Labarga, C.; Khusnutdinova, E.K.; Fedorova, S.A.; Golubenko, M.V.; Stepanov, V.A.; Gubina, M.A.; Zhadanov, S.I.; Ossipova, L.P.; Damba, L.; Voevoda, M.I.; Dipierri, J.E.; Villems, R. ... Malhi, R.S. (2007). Beringian standstill and spread of Native American founders. PLOS ONE, 9, e829.
1.1.
2007
Chaubey, G.; Metspalu, M.; Kivisild, T.; Villems, R. (2007). Peopling of South Asia: investigating the caste-tribe continuum in India. BioEssays, 29 (1), 91−100.
3.1.
2007
Endicott, P.; Metspalu, M.; Kivisild, T. (2007). Genetic evidence on modern human dispersals in South Asia: Y chromosome and mitochondrial DNA perspectives. In: Petraglia M.-D.; Allchin,B. (Ed.). The Evolution and History of Human Populations in South Asia (229−244).. Springer. (Vertebrate Paleobiology and Paleoanthropology).
3.3.
2007
Chaubey, G.; Metspalu, M.; Villems, R.; Kivisild, T. (2007). Reply to winters. BioEssays, 29 (5), 499.
1.1.
2006
Endicott, P.; Metspalu, M.; Stringer, C.; Macaulay, V.; Cooper, A.; Sanchez, J. (2006). Multiplexed SNP Typing of Ancient DNA Clarifies the Origin of Andaman mtDNA Haplogroups amongst South Asian Tribal Populations. PLoS ONE, 1 (1), e81. DOI: 10.1371/journal.pone.0000081.
1.1.
2006
Sahoo, S.; Singh, A.; Himabindu, G.; Banerjee, J.; Sitalaximi, T.; Gaikwad, S.; Trivedi, R.; Endicott, P.; Kivisild, T.; Metspalu, M.; Villems, R.; Kashyap, VK. (2006). A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios. Proceedings of the National Academy of Sciences of the United States of America, 103 (4), 843−848.
3.1.
2006
Metspalu, Mait; Kivisild, T; Bandelt, H-J; Richards, M; Villems, R (2006). The pioneer settlement of modern humans in Asia. In: Bandelt, H-J; Macaulay, V; Richards, M. (Ed.). Human mitochondrial DNA and the evolution of Homo sapiens (179−197).. Springer Heidelberg.
1.1.
2004
Metspalu, M.; Kivisild, T.; Metspalu, E.; Parik, J.; Hudjashov, G.; Kaldma, K.; Serk, P.; Karmin, M.; Behar, DM.; Gilbert, MTP.; Endicott, P.; Mastana, S.; Papiha, SS.; Skorecki, K.; Torroni, A.; Villems, R. (2004). Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genetics, 5, 26.
1.1.
2003
Kivisild, T.; Rootsi, S.; Metspalu, M.; Mastana, S.; Kaldma, K.; Parik, J.; Metspalu, E.; Adojaan, M.; Tolk, HV.; Stepanov, V.; Golge, M.; Usanga, E.; Papiha, SS.; Cinnioglu, C.; King, R.; Cavalli-Sforza, L.; Underhill, PA.; Villems, R. (2003). The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations. The American Journal of Human Genetics, 72 (2), 313−332.
3.2.
2003
Kivisild, T.; Rootsi, S.; Metspalu, M.; Metspalu, E.; Parik, J.; Usanga, E.; Papiha, S.; Mastana, S.; Villems, R. (2003). Genetics of the language and farming spread in India. In: P. Bellwood, C. Renfrew (Ed.). Examining the farming/language dispersal hypothesis (215−222).. Cambridge: Macdonald Institute for Archaeological Research.
3.1.
2000
Kivisild, T.; Papiha, S.; Rootsi, S.; Parik, J.; Kaldma, K.; Reidla, M.; Laos, S.; Metspalu, M.; Pielberg, G.; Adojaan, M.; Mastana, S.; Wang, Y.; Gölge, M.; Demitras, H.; Schnakenberg, E.; de Stefano, G.; Geberhiwot, T.; Claustres, M.; Villems, R. (2000). An Indian Ancestry: a key for understanding human diversity in Europe and beyond. In: Renfrew, C.; Boyle, K. (Ed.). Archaeogenetics: DNA and the population prehistory of Europe (267−276). . Cambridge University Press. (Series of Monographs of the McDonald Institute for Archaeological Resarch).
1.1.
1999
Kivisild, T.; Bamshad, MJ.; Kaldma, K.; Metspalu, M.; Metspalu, E.; Reidla, M.; Laos, S.; Parik, J.; Watkins, WS.; Dixon, ME.; Papiha, SS.; Mastana, SS.; Mir, MR.; Ferak, V.; Villems, R. (1999). Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages. Current Biology, 9 (22), 1331−1334.
3.1.
1999
Kivisild, T.; Kaldma, K.; Metspalu, M.; Parik, J.; Papiha, S.; Villems, R. (1999). The Place of the Indian mtDNA Variants in the Global Network of Maternal Lineages and the Peopling of the Old World. In: Genomic Diversity (135-152). . Kluwer Academic Publishers.
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ProgrammLiikNumberNimiProjekti algusProjekti lõppVastutav täitjaAsutusFinantseerijapoolne rahastamine
1.1.7.1.SMVPT20243COVID-19 aktiivne seire23.04.202031.12.2020Mikk JürissonTartu Ülikool, Meditsiiniteaduste valdkond, peremeditsiini ja rahvatervishoiu instituut1 800 000,00 EUR
1.1.7.1.SMVPT20599COVID-19 AKTIIVNE SEIRE-211.11.202030.04.2021Mikk JürissonTartu Ülikool, Meditsiiniteaduste valdkond, peremeditsiini ja rahvatervishoiu instituut1 643 160,00 EUR
MOBTTMOBTT53Eesti genoome harutades: tervik on suurem kui tema osade summa01.05.201730.04.2021Luca PaganiTartu Ülikool, Tartu Ülikooli genoomika instituut570 915,50 EUR
MUU3.2.0304.11-0312Eesti Genoomikakeskus01.04.201131.12.2015Mait MetspaluEesti Biokeskus1 064 702,00 EUR
1.1.5.3.4.1.2.SP1GI16442TEesti Genoomikakeskus II01.01.201631.08.2022Andres MetspaluEesti Biokeskus; Tartu Ülikool, Tartu Ülikooli genoomika instituut636 001,79 EUR
1.1.5.3.4.1.2.SP1GI16431TEluteaduste andmete teadustaristu01.03.201631.08.2022Jaak ViloEesti Biokeskus; Tartu Ülikool, Tartu Ülikooli genoomika instituut93 395,45 EUR
ETFETF8973Euraasia populatsioonide geneetiline struktuur ja kohastumine lokaalses keskkonnas arktika populatsioonide näitel.01.01.201131.12.2014Mait MetspaluEesti Biokeskus48 000,00 EUR
SFSF0182474As03Genoomi polümorfism ja inimkonna bioloogiline ajalugu01.01.200331.12.2007Richard VillemsEesti Biokeskus471 731,87 EUR
TKSLTMR16142T (TK142)Genoomika ja Siirdemeditsiini Tippkeskus (TK142)01.01.201601.03.2023Andres MetspaluTartu Ülikool, Tartu Ülikooli Eesti Geenivaramu4 474 349,50 EUR
1.2.3.4.MP1GI18418R (810645)Genoomika, Evolutsiooni ja Meditsiini Keskus01.09.201831.08.2023Mait MetspaluTartu Ülikool, Tartu Ülikooli genoomika instituut1 835 000,00 EUR
1.2.3.4.MMVCM18418R (810645)Genoomika, Evolutsiooni ja Meditsiini Keskus01.09.201831.08.2023Mait MetspaluTartu Ülikool665 000,00 EUR
SFSF0270177As08Inimpopulatsioonide globaalne struktureerumine: ränded, triiv ja valik01.01.200831.12.2013Richard VillemsEesti Biokeskus883 924,10 EUR
TAPTAP42-1Järgmise põlvkonna DNA sekvenaatori (Oxford Nanopore) soetamine01.11.201131.12.2013Mait MetspaluEesti Biokeskus234 600,00 EUR
TAPTAP28-1Jätkusuutlik genoomika laiale tarbijaskonnale01.10.201101.10.2012Mait MetspaluEesti Biokeskus198 770,21 EUR
PRGPRG243Looduslik valik ja migratsioonid inimese geneetilise varieeruvuse kujunemisel Ida Euroopa lauskmaal. Vana-DNA uurimus01.01.201831.12.2022Mait MetspaluTartu Ülikool, Tartu Ülikooli genoomika instituut914 112,50 EUR
1.1.5.3.4.1.3.3.SP1GY19493T (MOBEIT004)Mobilitas Pluss EIT projekti toetamise tegevuskava MOBEIT004 EIT- Health Mobilitas- 201.04.201931.10.2022Taivo RaudTartu Ülikool, Tugiüksused, grandikeskus200 000,00 EUR
MUUPIRSES-GA-2012-318979NEFREX01.01.201331.12.2016Mait MetspaluEesti Biokeskus37 800,00 EUR
1.2.5.MP1GI18407 (GRANT #HJ3-182R-18)Reconstructing the genomic history of Bangladesh: a genetic 'white spot'01.02.201831.12.2019Mait MetspaluTartu Ülikool, Tartu Ülikooli genoomika instituut27 901,36 EUR
TAPTAP42-2Suuremahuliste genoomiandmete analüüsivõimekuse tõstmine01.09.201231.12.2013Mait MetspaluEesti Biokeskus232 740,00 EUR
IUTIUT24-1Täisgenoomse ajastu koidik arheogeneetikas 01.01.201431.12.2019Richard VillemsEesti Biokeskus; Tartu Ülikool, Tartu Ülikooli genoomika instituut1 386 400,00 EUR
1.1.5.3.4.1.1.SP1GI17941T (2014-2020.4.01.16-0030)Ultrasensitiivne biomolekulide labor ja moodne populatsioonigeneetika01.01.201631.08.2022Mait MetspaluEesti Biokeskus; Tartu Ülikool, Tartu Ülikooli genoomika instituut998 389,98 EUR
MUU3.2.1001.11-0021Uudne melanoomi patogeneesi immuunogeneetiline iseloomustamine01.04.201231.08.2015Mait MetspaluEesti Biokeskus171 000,00 EUR
1.1.5.2.1.37.SLOTI12105TUudne melanoomi patogeneesi immuunogeneetiline iseloomustamine01.05.201230.09.2015Mart UstavTartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Tehnoloogiainstituut277 037,10 EUR
ETFETF5574Volga-Uurali ja Siberi rahvaste Y kromosoomi fülogenees01.01.200331.12.2006Toomas KivisildEesti Biokeskus31 647,55 EUR