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Jonne Kotta

https://www.etis.ee/CV/Jonne_Kotta/eng
7.06.1972
671 8935
+372505 6583
jonne@sea.ee

Career

Institutions and positions
15.02.2021–...   
Tallinn University of Technology , Estonian Maritime Academy, Senior Researcher (0,80)
01.01.2021–...   
University of Tartu, Faculty of Science and Technology, Estonian Marine Institute, Professor in Marine Ecology (1,00)
01.11.2019–30.01.2020   
Southern University of Chile, Visiting professor (1,00)
01.11.2018–31.12.2020   
University of Tartu, Faculty of Science and Technology, Estonian Marine Institute, Research Professor in Marine Ecology (1,00)
01.02.2018–31.10.2018   
University of Tartu, Faculty of Science and Technology, Estonian Marine Institute, Research Professor in Marine Ecology (1,00)
01.01.2018–28.02.2018   
Southern University of Chile, Visiting Professor (1,00)
01.01.2016–31.01.2018   
University of Tartu, Faculty of Science and Technology, Estonian Marine Institute, Lead Research Fellow (1,00)
01.01.2014–31.12.2015   
Southern University of Chile, lead research scientist
01.03.2013–31.12.2015   
University of Tartu, Faculty of Science and Technology (old), Estonian Marine Institute, University of Tartu, Lead Research Fellow (1,00)
19.03.2011–28.02.2013   
University of Tartu, Faculty of Science and Technology (old), Estonian Marine Institute, University of Tartu, Senior Research Fellow in Marine Biology (1,00)
01.01.2008–31.12.2014   
University of Western Australia, guest scientist, productivity of coral and macroalgae, suspension feeding of corals, sabathical leave of a few months
01.01.2008–18.03.2011   
University of Tartu, Faculty of Science and Technology (old), Estonian Marine Institute, University of Tartu, Senior Research Fellow (1,00)
19.03.2006–31.12.2007   
University of Tartu, Faculty of Science and Technology (old), Estonian Marine Institute, University of Tartu, Senior Research Fellow (1,00)
01.01.2002–31.12.2003   
Eurouniversity, lector
19.03.2001–18.03.2006   
University of Tartu, Faculty of Science and Technology (old), Estonian Marine Institute, University of Tartu, Senior Research Fellow (1,00)
01.01.2001–31.12.2001   
Tallinn Pedagogical University, lector
01.01.2001–31.12.2001   
Helsingi University, Finland, guest scientist, interspecific interactions
01.01.2001–31.12.2006   
University of Tartu, Estonian Marine Institute, University of Tartu, senior researcher
01.01.2000–31.12.2000   
Helsingi University, Finland, guest scientist, invasion ecology
01.01.1999–31.12.1999   
West Estonian Biosphere Reserve Area, specialist in marine ecosystems
01.01.1999–31.12.1999   
Natural History Museum in Paris, France, guest scientist, ecology of freeliving marine nematodes in tropical seas
01.01.1999–31.12.1999   
Stockholm University, Sweden, guest scientist, invasion ecology
01.01.1997–31.12.1999   
University of Turku, Finland, guest scientist, 4 months, relationships between benthic and pelagic systems
01.01.1996–31.12.2000   
Estonian Marine Institute, scientist
01.01.1996–31.12.1996   
National Environmental Research Institute, Denmark, guest scientist, suspension feeding of bivalves
01.01.1995–31.12.1995   
Other staff
01.01.1994–31.12.1996   
Estonian Marine Institute, junior scientist
01.01.1993–31.12.1993   
Estonian Marine Institute, technician
 
 
Education
1996–2000   
PhD, University of Tartu
1993–1996   
MSc, University of Tartu
1989–1993   
BSc, University of Tartu
 
 
R&D related managerial and administrative work
2018−...   
Estonian representative of ICES Science Committee
2018−...   
Vice Director of the Estonian Marine Institute, University of Tartu
2017−...   
Advising the Ministry of Finance of the Republic of Estonia in maritime spatial planning issues
2017−...   
Representative of developmental plan and aquaculture related working groups at the Estonian Ministry of Rural Affairs
2015−...   
Proceedings of the Estonian Academy of Sciences, editor
2014−...   
Editor of Hydrobiologia
2002−...   
HELCOM Benthic Ecology Working Group representative, ICES Cumulative Impact Assessment Working Group representative, ICES Nonindigeneous Species Working Group representative, ICES SGPROD representative, member of Estonian Malacological Society, a selected member of the council of Estonian Marine Institute

Qualifications

Academic degrees
Jonne Kotta, Doctor's Degree, 2000, (sup) Toomas Saat, Impact of eutrophication and biological invasions on the structure and functions of benthic macrofauna, University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Chair of Hydrobiology.
 
 
Honours & awards
2021, Jonne Kotta, The Estonian National Science Award in bio- and geosciences on a work cycle related to the environmental effects of climate change
 
 
Fields of research
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B260 Hydrobiology, marine biology, aquatic ecology, limnology ; SPECIFICATION: Patterns of spatial and temporal variation in marine ecosystems
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B260 Hydrobiology, marine biology, aquatic ecology, limnology ; SPECIFICATION: Process studies
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B260 Hydrobiology, marine biology, aquatic ecology, limnology ; SPECIFICATION: Invasion ecology
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B260 Hydrobiology, marine biology, aquatic ecology, limnology ; SPECIFICATION: Climate change
 
 

Projects in progress

Completed projects

Dissertations under supervision

Supervised dissertations

Supervision of postdoctoral researchers

  • 01.02.2017−01.01.2019    Kiran Liversage  "Otsides võõrliikide massrännetest tingitud režiiminihete põhjuseid ja võimalikke lahendusi Läänemere keskkonnas" (University of Tartu)

Publications

Category
Year
Publication
 
1.1.
2021
Heckwolf, M.J.; Peterson, A.; Jänes, H.; Horne, P.; Künne, J.; Liversage, K.; Sajeva, M.; Reusch, T.B.H.; Kotta, J. (2021). From ecosystems to socio-economic benefits: a systematic review of coastal ecosystem services in the Baltic Sea. The Science of The Total Environment, 755. DOI: 10.1016/j.scitotenv.2020.142565 [forthcoming].
1.1.
2021
Kotta, J.; Fetissov, M.; Szava-Kovats, R.; Aps, R.; Martin, G. (2021). Online tool to integrate evidence-based knowledge into cumulative effects assessments: Linking human pressures to multiple nature assets. Environmental Advances, xx−xx [forthcoming].
1.1.
2021
Rotter, A.; Barbier, M.; Bertoni, F.; Bones, A.M.; Cancela, M.L.; Carlsson, J.; Carvalho, M.F.; Cegłowska, M.; Chirivella-Martorell, J.; Conk Dalay, M.; Cueto, M.; Dailianis, T.; Deniz, I.; Díaz-Marrero, A.R.; Drakulovic, D.; Dubnika, A.; Edwards, C.; Einarsson, H.; Erdogan, A.; Eroldogan, O.T. ... Vasquez, M.I. (2021). The marine environment, a treasure trove for biotechnology. Frontiers in Marine Science, xx−xx [forthcoming].
1.1.
2021
Kovalenko, K.E.; Pelicice, F.M.; Kats, L.B.; Kotta, J.; Thomaz, S.M. (2021). Aquatic invasive species: Introduction to the Special Issue and dynamics of public interest. Hydrobiologia, xx−xx [forthcoming].
1.1.
2021
Depellegrin, D.; Hansen, H.S.; Schrøder, L.; Bergström, L.; Romagnoni, G.; Steenbeek, J.; Gonçalves, M.; Carneiro, G.; Hammar, L.; Pålsson, J.; Schmidtbauer Crona, J.; Hume, D.; Kotta, J.; Fetissov, M.; Miloš, A.; Kaitairanta, J.; Menegon, S. (2021). Current status, advancements and development needs of geospatial decision support tools for marine spatial planning in European Seas. Ocean & Coastal Management, xx−xx [forthcoming].
1.1.
2021
Kotta, J.; Torn, K.; Paalme, T.; Rätsep, M.; Kaljurand, K.; Teeveer, M.; Kotta, I. (2021). Scale-specific patterns of the production of the charophyte Chara aspera in the brackish Baltic Sea: linking individual and community production and biomass growth. Frontiers in Marine Science, xx−xx [forthcoming].
1.1.
2021
Kreitsberg, R.; Raudna-Kristoffersen, M.; Heinlaan, M.; Ward, R.; Visnapuu, M.; Kisand, V.; Meitern, R.; Kotta, J.; Tuvikene, A. (2021). Seagrass beds reveal high abundance of microplastic in sediments: a case study in the Baltic Sea. Marine Pollution Bulletin, 168, xx−xx. DOI: 10.1016/j.marpolbul.2021.112417.
1.1.
2021
Ojaveer, H.; Kotta, J.; Outinen, O.; Einberg, H.; Zaiko, A.; Lehtiniemi, M. (2021). Meta-analysis on the ecological impacts of widely spread non-indigenous species in the Baltic Sea. The Science of The Total Environment, xx−xx [forthcoming].
1.1.
2021
Liversage, K.; Kotta, J.; Kuprijanov, I.; Rätsep, M.; Nõomaa, K. (2021). A trophic cascade facilitates native habitat providers within assemblages of multiple invasive marine species. Ecosphere, xx−xx [forthcoming].
1.1.
2021
Valdivia, N.; López, D.N.; Fica, E.; Catalán, A.M.; Aguilera, M.A.; Araya, M.;, Betancourtt, C.; Burgos-Andrade, K.; Carvajal-Baldeon, T.; Escares, V.; Gartenstein, S.; Grossmann, M.; Gutiérrez, B.; Kotta, J.; Morales-Torres, D.F.; Riedemann-Saldivia, B.; Rodríguez, S.M.; Velasco-Charpentier, C.; Villalobos, V.I.; Broitman, B.R. (2021). Stability of rocky intertidal communities in response to species removal varies across spatial scales. Oikos, xx−xx [forthcoming].
1.1.
2021
Galparsoro, I.; Pınarbaşı, K.; Gissi, E.; Culhane, F.; Gacutan, J.; Kotta, J.; Cabana, D.; Wanke, S.; Aps, R.; Bazzucchi, D.; Cozzolino, G.; Custodio, M.; Fetissov, M.; Inácio, M.; Jernberg, S.; Piazzi, A.; Paudel, K.P.; Ziemba, A.; Depellegrin, D. (2021). Operationalisation of ecosystem services in support of ecosystem-based marine spatial planning: insights into needs and recommendations. Marine Policy, xx−xx [forthcoming].
1.1.
2021
Fetissov, Mihhail; Aps, Robert; Goerlandt, Floris; Jänes, Holger; Kotta, Jonne; Kujala, Pentti; Szava-Kovats, Robert (2021). Next-Generation Smart Response Web (NG-SRW): An Operational Spatial Decision Support System for Maritime Oil Spill Emergency Response in the Gulf of Finland (Baltic Sea). Sustainability, 13 (12), 1−11. DOI: 10.3390/su13126585.
1.1.
2021
Vahtmäe, E.; Kotta, J.; Lõugas, L.; Kutser, T. (2021). Mapping spatial distribution, percent cover and biomass of benthic vegetation in optically complex coastal waters using hyperspectral CASI and multispectral Sentinel-2 sensors. International Journal of Applied Earth Observation and Geoinformation. DOI: 10.1016/j.jag.2021.102444 [forthcoming].
1.1.
2021
Rudovica, V.; Rotter, A.; Gaudêncio, S. P.; Novoveská, L.; Akgül, F.; Akslen-Hoel, L. K.; Alexandrino, D. A. M.; Anne, O.; Arbidans, L.; Atanassova, M.; Bełdowska, M.; Bełdowski, J.; Bhatnagar, A.; Bikovens, O.; Bisters, V.; Carvalho, M. F.; Catalá, T. S.; Dubnika, A.; Erdoğan, A.; Ferrans, L. ... Burlakovs, J. (2021). Valorization of marine waste: exploitation of industrial by-products and beach wrack towards the production of high added-value products. Frontiers in Marine Science, xx−xx. DOI: 10.3389/fmars.2021.723333 [forthcoming].
1.1.
2021
Fraschetti, S.; McOwen, C.; Papa, L.; Papadopoulou, N.; Bilan, M.; Boström, C.; Capdevila, P.; Carreiro-Silva, M.; Carugati, L.; Cebrian, E.; Coll, M.; Dailianis, T.; Roberto, D.; De Leo, F.; Fiorentino, D.; Gagnon, K.; Gambi, C.; Garrabou, J.; Gerovasileiou, V.; Hereu, B. ... Guarnieri, G. (2021). Where is more important than how in coastal and marine ecosystems restoration. Frontiers in Marine Science, xx−xx [forthcoming].
1.1.
2020
Pajusalu, L.; Albert, G.; Fachon, E.; Hepburn, D.C.; Kotta, J.; Liversage, K.; Paalme, T.; Peterson, A.; Pritchard, W.D.; Põllumäe, A.; Torn, K.; Martin, G. (2020). Ocean acidification may threaten a unique seaweed community and associated industry in the Baltic Sea. Journal of Applied Phycology, 32 (4), 2469−2478. DOI: 10.1007/s10811-019-01935-1.
1.1.
2020
Liversage, Kiran; Kotta, Jonne; Fraser, Clarissa M. K.; Figueira, Will F.; Coleman, Ross A. (2020). The overlooked role of taphonomy in ecology: post-mortem processes can outweigh recruitment effects on community functions. Oikos, 129 (3), 420−432. DOI: 10.1111/oik.06780.
1.1.
2020
Kotta, J.; Futter, M.; Kaasik, A.; Liversage, K.; Rätsep, M.; Barboza, F.R.; Bergström, L.; Bergström, P.; Bobsien, I.; Díaz, E.; Herkül, K.; Jonsson, P.R.; Korpinen, S.; Kraufvelin, P.; Krost, P.; Lindahl, O.; Lindegarth, M.; Lyngsgaard, M.M.; Mühl, M.; Sandman, A.N. ... Virtanen, E. (2020). Cleaning up seas using blue growth initiatives: mussel farming for eutrophication control in the Baltic Sea. The Science of The Total Environment, 709. DOI: 10.1016/j.scitotenv.2019.136144.
1.1.
2020
Bekkby, T.; Papadopoulou, N.; Fiorentino, D.; McOwen, C.J.; Rinde, E.; Boström, C.; Carreiro-Silva, M.; Linares, C.; Andersen, G.S.; Bengil, E.G.T.; Bilan, M.; Cebrian, E.; Cerrano, C.; Fagerli, C.W.; Fraschetti, S.; Gagnon, K.; Gambi, C.; Gundersen, H.; Kipson, S.; Kotta, J. ... Smith, C.J. (2020). Habitat features and their influence on the restoration potential of marine habitats in Europe. Frontiers in Marine Science, xx−xx.
1.1.
2020
Rotter, A.; Bacu, A.; Barbier, M.; Bertoni, F.; Bones, A.M.; Leonor Cancela, M.; Carlsson, J.; Carvalho, M.F.; Cegłowska, M.; Dalay, M.C.; Dailianis, T.; Deniz, I.; Drakulovic, D.; Dubnika, A.; Einarsson, H.; Erdoğan, A.; Eroldoğan, O.T.; Ezra, D.; Fazi, S.; FitzGerald, R.J. ... Vasquez, M.I. (2020). A new network for the advancement of marine biotechnology in Europe and beyond. Frontiers in Marine Science, xx−xx.
1.1.
2020
Toming, Kaire; Kotta, Jonne; Uuemaa, Evelyn; Sobek, Sebastian; Kutser, Tiit; Tranvik, Lars J. (2020). Predicting lake dissolved organic carbon at a global scale. Scientific Reports, xx−xx.
1.1.
2020
Wenne, R.; Zbawicka, M.; Bach, L.; Strelkov, P.; Gantsevich, M.; Kukliński, P.; Kijewski, T.; McDonald, J.H.; Sundsaasen, K.K.; Árnyasi, M.; Lien, S.; Kaasik, A.; Herkül, K.; Kotta, J. (2020). Trans-Atlantic distribution and introgression as inferred from single nucleotide polymorphism: mussels Mytilus and environmental factors. Genes, 11 (5), xx−xx. DOI: 10.3390/genes11050530.
1.1.
2020
Liversage, K.; Kotta, J.; Pajusalu, L. (2020). Effectiveness of common benthic macrofaunal sampling methodology in boulder and cobble reefs. Journal of Experimental Marine Biology and Ecology, 530−531. DOI: 10.1016/j.jembe.2020.151413.
1.1.
2020
Lõugas, Laura; Kutser, Tiit; Kotta, Jonne; Vahtmäe, Ele (2020). Detecting Long Time Changes in Benthic Macroalgal Cover Using Landsat Image Archive. Remote Sensing, 12 (11). DOI: 10.3390/rs12111901.
1.1.
2020
Skov, H.; Rasmussen, E.K.; Kotta, J.; Middelboe, A.L.; Uhrenholdt, T.; Žydelis, R. (2020). Food web responses to eutrophication control in a coastal area of the Baltic Sea. Ecological Modelling, xx−xx. DOI: 10.1016/j.ecolmodel.2020.109249.
1.1.
2020
Sajeva, M.; Maidell, M.; Kotta, J.; Peterson, A. (2020). An Eco-GAME meta-evaluation of existing methods for the appreciation of ecosystem services. Sustainability, xx−xx.
1.1.
2020
Sajeva, M.; Maidell, M.; Kotta, J. (2020). A participatory geo-spatial toolkit for science integration and knowledge transfer informing SDGs based governance and decision making. Sustainability, 12 (19), xx−xx. DOI: 10.3390/su12198088.
6.8.
2020
Kotta, J.; Futter, M.; Kaasik, A.; Liversage, K.; Rätsep, M.; Barboza, F.R.; Bergström, L.; Bergström, P.; Bobsien, I.; Díaz, E.; Herkül, K.; Jonsson, P.R.; Korpinen, S.; Kraufvelin, P.; Krost, P.; Lindahl, O.; Lindegarth, M.; Lyngsgaard, M.M.; Mühl, M.; Sandman, A.N. ... Virtanen, E. (2020). Response to a letter to editor regarding Kotta et al. 2020: Cleaning up seas using blue growth initiatives: Mussel farming for eutrophication control in the Baltic Sea. The Science of The Total Environment, xx−xx.
1.1.
2019
Kijewski, T.; Zbawicka, M.; Strand, J.; Kautsky, H.; Kotta, J.; Rätsep, M.; Wenne, R. (2019). Random forest assessment of correlation between environmental factors and genetic differentiation of marine populations: a case of the mussels Mytilus. Oceanologia, 61 (1), 131−142. DOI: 10.1016/j.oceano.2018.08.002.
1.1.
2019
Minchin, D.; Arbačiauskas, K.; Daunys, D.; Ezhova, E.; Grudule, N.; Kotta, J.; Molchanova, N.; Olenin, S.; Višinskienė, G.; Strake, S. (2019). Rapid expansion and facilitating factors of the Ponto-Caspian invader Dikerogammarus villosus within the eastern Baltic Sea. Aquatic Invasions, xx−xx. DOI: 10.3391/ai.2019.14.2.02.
1.1.
2019
Liversage, Kiran; Kotta, Jonne (2019). A rare example of non-native chitons: broad intertidal habitat range and large densities of Sypharochiton pelliserpentis show no evidence of habitat engineering effect in South Australia. Aquatic Invasions, 14 (2), 267−279. DOI: 10.3391/ai.2019.14.2.07.
1.1.
2019
Kotta, Jonne; Vanhatalo, Jarno; Janes, Holger; Orav-Kotta, Helen; Rugiu, Luca; Jormalainen, Veijo; Bobsien, Ivo; Viitasalo, Markku; Virtanen, Elina; Sandman, Antonia Nystrom; Isaeus, Martin; Leidenberger, Sonja; Jonsson, Per R.; Johannesson, Kerstin (2019). Integrating experimental and distribution data to predict future species patterns. Scientific Reports, 9, ARTN 1821. DOI: 10.1038/s41598-018-38416-3.
1.1.
2019
Gerovasileiou, V.; Smith, C.J.; Sevastou, K.; Papadopoulou, N.; Dailianis, T.; Bekkby, T.; Fiorentino, D.; McOwen, C.J.; Amaro, T.; Bengil, E.G.T.; Bilan, M.; Boström, C.; Carreiro-Silva, M.; Cebrian, E.; Cerrano, C.; Danovaro, R.; Fraschetti, S.; Gagnon, K.; Gambi, C.; Grehan, A. ... Scrimgeour, R. (2019). Habitat mapping in the European Seas - is it fit for purpose in the marine restoration agenda? Marine Policy, 106, 103521. DOI: 10.1016/j.marpol.2019.103521.
1.1.
2019
Liversage, K.; Kotta, J.; Aps, R.; Fetissov, M.; Nurkse, K.; Orav-Kotta, H.; Rätsep, M.; Forsström, T.; Fowler, A.; Lehtiniemi, M.; Normant-Saremba, M.; Puntila-Dodd, R.; Arula, T.; Hubel, K.; Ojaveer, H. (2019). Knowledge to decision in dynamic seas: Methods to incorporate non-indigenous species into cumulative impact assessments for Maritime Spatial Planning. The Science of The Total Environment, 658, 1452−1464. DOI: 10.1016/j.scitotenv.2018.12.123.
1.1.
2019
Barboza, Francisco R.; Kotta, Jonne; Weinberger, Florian; Jormalainen, Veijo; Kraufvelin, Patrik; Molis, Markus; Schubert, Hendrik; Pavia, Henrik; Nylund, Göran M.; Kautsky, Lena; Schagerström, Ellen; Rickert, Esther; Saha, Mahasweta; Fredriksen, Stein; Martin, Georg; Torn, Kaire; Ruuskanen, Ari; Wahl, Martin (2019). Geographic variation in fitness‐related traits of the bladderwrack Fucus vesiculosus along the Baltic Sea‐North Sea salinity gradient. Ecology and Evolution, 1−14. DOI: 10.1002/ece3.5470.
1.1.
2019
Renaud, Paul E.; Wallhead, Phil; Kotta, Jonne; Wtodarska-Kowalczuk, Maria; Bellerby, Richard G. J.; Rätsep, Merli; Slagstad, Dag; Kuklinski, Piotr (2019). Arctic Sensitivity? Suitable Habitat for Benthic Taxa Is Surprisingly Robust to Climate Change. Frontiers in Marine Science, 6, UNSP 538. DOI: 10.3389/fmars.2019.00538.
1.1.
2019
Holmes, M.; Persson, A.; Sahlin, U.; Kotta, J. (2019). Marine protected areas modulate habitat suitability of the invasive round goby (Neogobius melanostomus) in the Baltic Sea. Estuarine Coastal and Shelf Science, 229, 106380. DOI: 10.1016/j.ecss.2019.106380.
2.5.
2019
Pajusalu, L; Bakran-Petricioli, T; Boström, C; Carugati, L; Christie, H; Da Ros, Z; Danovaro, R; Gagnon, K; Gambi, C; Govers, L; Gräfnings, M; Kaljurand, K; Kipson, S; Kotta, J; Martire, M.L; Rinde, E; van der Heide, T; van de Koppel, J; Martin, G. (2019). Restoration results in the case study sites. In: Merces project D2.2 report (1−53).
2.5.
2019
Nõmmela, Kaidi; Kotta, Jonne; Piirimäe, Kristjan (2019). Merekeskkonna ressursside kasutamisest saadava majandusliku kasu mudeli täiendamine ökosüsteemiteenustega.
1.1.
2018
Lokko, K.; Kotta, J.; Orav-Kotta, H.; Nurkse, K.; Pärnoja, M. (2018). Introduction of a functionally novel consumer to a low diversity system: effects of the mud crab Rhithropanopeus harrisii on meiobenthos. Estuarine Coastal and Shelf Science, x−x. DOI: 10.1016/j.ecss.2015.11.017.
1.1.
2018
Vahtmäe, E.; Kotta, J.; Orav-Kotta, H.; Kotta, I.; Pärnoja, M.; Kutser, T. (2018). Predicting macroalgal pigments (chlorophyll a, chlorophyll b, chlorophyll a+b, carotenoids) in various environmental conditions using high resolution hyperspectral spectroradiometers. International Journal of Remote Sensing, 39 (17), xx−xx. DOI: 10.1080/01431161.2017.1399481.
1.1.
2018
Nurkse, K.; Kotta, J.; Rätsep, M.; Kotta, I.; Kreitsberg, R. (2018). Experimental evaluation of the effects of the novel predators, round goby and mud crab on benthic invertebrates in the Gulf of Riga, the Baltic Sea. Journal of the Marine Biological Association of the United Kingdom, 98 (1), 25−31. DOI: 10.1017/S0025315417001965.
1.1.
2018
Guy-Haim, T.; Lyons, D. A.; Kotta, J.; Ojaveer, H.; Queirós, A. M.; Chatzinikolaou, E.; Arvanitidis, C.; Como, S.; Magni, P.; Blight, A. J.; Orav-Kotta, H.; Somerfield, P.J.; Crowe, T. P.; Rilov, G. (2018). Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions – a global review and meta-analysis. Global Change Biology, 24 (3), 906−924. DOI: 10.1111/gcb.14007.
1.1.
2018
Kotta, J.; Wernberg, T.; Jänes, H.; Kotta, I.; Nurkse, K.; Pärnoja, M.; Orav-Kotta, H. (2018). Novel crab predator causes marine ecosystem regime shift. Scientific Reports, 8, xx−xx. DOI: 10.1038/s41598-018-23282-w.
1.1.
2018
Aps, Robert; Herkül, Kristjan; Kotta, Jonne; Cormier, Roland; Kostamo, Kirsi; Laamanen, Leena; Lappalainen, Juho; Lokko, Külli; Peterson, Anneliis; Varjopuro, Riku (2018). Marine environmental vulnerability and cumulative risk profiles to support ecosystem-based adaptive maritime spatial planning. ICES Journal of Marine Science, 75 (7), 2488−2500. DOI: 10.1093/icesjms/fsy101.
1.1.
2018
Kotta, J.; Valdivia, N.; Kutser, T.; Toming, K.; Rätsep, M.; Orav-Kotta, H. (2018). Predicting the cover and richness of intertidal macroalgae in remote areas: a case study in the Antarctic Peninsula. Ecology and Evolution, 8 (17), 9086−9094. DOI: 10.1002/ece3.4463.
1.1.
2018
Liversage, K.; Kotta, J. (2018). Unveiling commonalities in understudied habitats of boulder-reefs: life-history traits of the widespread invertebrate and algal inhabitants. Marine Biology Research, 14 (7), 655−671. DOI: 10.1080/17451000.2018.1510180.
1.1.
2018
Dailianis, T.; Smith, C.J.; Papadopoulou, N.; Gerovasileiou, V.; Sevastou, K.; Bekkby, T.; Bilan, M.; Billett, D.; Boström, C.; Danovaro, R.; Fraschetti, S.; Gagnon, K.; Gambi, C.; Grehan, A.; Kipson, S.; Kotta, J.; McOwen, C.J.; Morato, T.; Ojaveer, H.; Pham, C.K. ... Scrimgeour, R. (2018). Human activities and resultant pressures on key European marine habitats: an analysis of mapped resources. Marine Policy, 98, 1−10. DOI: 10.1016/j.marpol.2018.08.038.
1.1.
2018
Bick, Andreas; Bastrop, Ralf; Kotta, Jonne; Meissner, Karin; Meyer, Maria; Syomin, Vitaly (2018). Description of a new species of Sabellidae (Polychaeta, Annelida) from fresh and brackish waters in Europe, with some remarks on the branchial crown of Laonome. Zootaxa, 4483 (2), 349−364. DOI: 10.11646/zootaxa.4483.2.7.
1.1.
2018
Kotta, J.; Herkül, K.; Jaagus, J.; Kaasik, A.; Raudsepp, U.; Alari, V.; Arula, T.; Haberman, J.; Järvet, A.; Kangur, K.; Kont, A.; Kull, A.; Laanemets, J.; Maljutenko, I.; Männik, A.; Nõges, P.; Nõges, T.; Ojaveer, H.; Peterson, A.; Reihan, A. ... Tõnisson, H. (2018). Linking atmospheric, terrestrial and aquatic environments in high latitude: Regime shifts in the Estonian regional climate system for the past 50 years. PLoS ONE, 13 (12), ARTN e0209568−20. DOI: 10.1371/journal.pone.0209568.
1.1.
2018
Jonsson, Per R.; Kotta, Jonne; Andersson, Helen C.; Herkul, Kristjan; Virtanen, Elina; Sandman, Antonia Nystrom; Johannesson, Kerstin (2018). High climate velocity and population fragmentation may constrain climate-driven range shift of the key habitat former Fucus vesiculosus. Diversity and Distributions, 24 (7), 892−905. DOI: 10.1111/ddi.12733.
1.1.
2017
Lokko, K.; Virro, T.; Kotta, J. (2017). Seasonal variability in the structure and functional diversity of psammic rotifer communities: role of environmental parameters. Hydrobiologia, 796 (1), 287−307. DOI: 10.1007/s10750-016-2923-3.
1.1.
2017
Kotta, J.; Orav-Kotta, H.; Jänes, H.; Hummel, H.; Arvanitidis, C.; van Avesaath, P.; Bachelet, G.; Benedetti-Cecchi, L.; Bojanic, N.; Como, S.; Coppa, S.; Coughlan, J.; Crowe, T.; Dal Bello, M.; Degraer, S.; Juanes de la Pena, J. A.; Fernandes de Matos, V. K.; Espinosa, F.; Faulwetter, S.; Frost, M. ... Weslawski, J. M. (2017). Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 525−538. DOI: 10.1017/S0025315416001351.
1.1.
2017
Jänes, H.; Kotta, J.; Pärnoja, M.; Crowe, T.; Rindi, F.; Orav-Kotta, H. (2017). Functional traits of marine macrophytes predict primary production. Functional Ecology, 31 (4), 975−986. DOI: 10.1111/1365-2435.12798.
1.1.
2017
Dal Bello, M.; Leclerc, J.-C.; Benedetti-Cecchi, L.; Arvanitidis, C.; van Avesaath, P.; Bachelet, G.; Bojanic, N.; Como, S.; Coppa, S.; Coughlan, J.; Crowe, T.; Degraer, S.; Espinosa, F.; Faulwetter, S.; Frost, M.; Guinda, X.; Jankowska, E.; Jourde, J.; Kerckhof, F.; Kotta, J. ... Hummel, H. (2017). Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 539−547. DOI: 10.1017/S0025315416001491.
1.1.
2017
Oganjan, K.; Lauringson, V.; Kotta, J.; Rostin, L.; Martin, G. (2017). Factors affecting the recruitment of Amphibalanus improvisus and Dreissena polymorpha in a highly eutrophic brackish bay. Estuarine Coastal and Shelf Science, 184, 37−45. DOI: 10.1016/j.ecss.2016.10.042.
1.1.
2017
Griffiths, J.R.; Kadin, M.; Nascimento, F.J.A.; Tamelander, T.; Törnroos, A.; Bonaglia, S.; Bonsdorff, E.; Brüchert, V.; Gårdmark, A.; Järnström, M.; Kotta, J.; Lindegren, M.; Nordström, M.C.; Norkko, A.; Olsson, J.; Weigel, B.; Žydelis, R.; Blenckner, T.; Niiranen, S.; Winder, M. (2017). The importance of benthic-pelagic coupling for marine ecosystem functioning in a changing world. GCB Bioenergy, 23 (6), 2179−2196. DOI: 10.1111/gcb.13642.
1.1.
2017
Dias, P. Joana; Fotedar, Seema; Munoz, Julieta; Hewitt, Matthew J.; Lukehurst, Sherralee; Hourston, Mathew; Wellington, Claire; Duggan, Roger; Bridgwood, Samantha; Massam, Marion; Aitken, Victoria; de Lestang, Paul; McKirdy, Simon; Willan, Richard; Kirkendale, Lisa; Giannetta, Jennifer; Corsini-Foka, Maria; Pothoven, Steve; Gower, Fiona; Viard, Frédérique ... Snow, Michael (2017). Establishment of a taxonomic and molecular reference collection to support the identification of species regulated by the Western Australian Prevention List for Introduced Marine Pests. Management of Biological Invasions, 8 (2), 215−225. DOI: 10.3391/mbi.2017.8.2.09.
1.1.
2017
Puente, A.; Guinda, X.; Juanes, J.A.; Ramos, E.; Echavarri-Erasun, B.; de la Hoz, C.F.; Degraer, S.; Kerckhof, F.; Bojanic, N.; Rousou, M.; Orav-Kotta, H.; Kotta, J.; Jourde, J.; Pedrotti, M.L.; Leclerc, J.-C.; Simon, N.; Bachelet, G.; Lavesque, N.; Arvanitidis, C.; Pavloudi, C. ... van Avesaath, P. (2017). The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 549−560. DOI: 10.1017/S0025315416001673.
1.1.
2017
Jänes, Holger; Herkül, Kristjan; Kotta, Jonne (2017). Environmental niche separation between native and non-native benthic invertebrate species: Case study of the northern Baltic Sea. Marine Environmental Research, 131, 123−133. DOI: 10.1016/j.marenvres.2017.08.001.
1.1.
2017
Leppänen, J.J.; Kotta, J.; Daneliya, M.; Salo, E. (2017). First record of Chelicorophium curvispinum (G.O. Sars, 1895) from Lake Mälaren, SE Sweden. BioInvasions Records, 6 (4), 345−349. DOI: 10.3391/bir.2017.6.4.07.
1.1.
2017
Möller, T.; Kotta, J. (2017). Rangia cuneata (G. B. Sowerby I, 1831) continues its invasion in the Baltic Sea: the first record in Pärnu Bay, Estonia. BioInvasions Records, 6 (2), 167−172. DOI: 10.3391/bir.2017.6.2.13.
1.1.
2017
Kuprijanov, Ivan; Herkül, Kristjan; Kotta, Jonne (2017). Ecological niche differentiation between native and non-native shrimps in the northern Baltic Sea. Aquatic Ecology, 51 (3), 389−404. DOI: 10.1007/s10452-017-9624-5.
1.1.
2017
Liversage, Kiran; Nurke, Kristiina; Kotta, Jonne; Järv, Leili (2017). Environmental heterogeneity associated with European perch (Perca fluviatilis) predation on invasive round goby (Neogobius melanostomus). Marine Environmental Research, 132, 132−139. DOI: 10.1016/j.marenvres.2017.10.017.
3.1.
2017
Radziejewska, T.; Kotta, J.; Kotwicki, L. (2017). Sandy coasts. In: Biological Oceanography of the Baltic Sea (457−482). Springer. DOI: 10.1007/978-94-007-0668-2_12.
3.1.
2017
Hummel, H.; van Avesaath, P.; Wijnhoven, S.; Kleine-Schaars, L.; Degraer, S.; Kerckhof, F.; Bojanic, N.; Skejic, S.; Vidjak, O.; Rousou, M.; Orav-Kotta, H.; Kotta, J.; Jourde, J.; Pedrotti, M. L.; Leclerc, J-C.; Simon, N.; Rigaut-Jalabert, F.; Bachelet, G.; Lavesque, N.; Arvanitidis, C. ... Rilov, G. (2017). Geographic patterns of biodiversity in European coastal marine benthos. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 507−523. DOI: 10.1017/S0025315416001119.
1.1.
2016
Gogina, M.; Zettler, M.L.; Nygård, H.; Blomqvist, M.; Daunys, D.; Josefson, A.B.; Kotta, J.; Maximov, A.; Warzocha, J.; Yermakov, V.; Gräwe, U. (2016). The Baltic Sea scale inventory of benthic faunal communities. ICES Journal of Marine Science, xx−xx.
1.1.
2016
Kotta, J.; Nurkse, K.; Puntila, R.; Ojaveer, H. (2016). Shipping and natural environmental conditions determine the distribution of the invasive non-indigenous round goby Neogobius melanostomus in a regional sea. Estuarine Coastal and Shelf Science, 169, 15−24.
1.1.
2016
Schiele, K.; Darr, A.; Zettler, M. L.; Berg, T.; Blomqvist, M.; Daunys, D.; Jermakovs, V.; Korpinen, S.; Kotta, J.; Nygård, H.; von Weber, M.; Voss, J.; Warzocha, J. (2016). Rating species sensitivity throughout gradient systems - a consistent approach for the Baltic Sea. Ecological Indicators, 61 (2), 447−455.
1.1.
2016
Herkül, Kristjan; Lauringson, Velda; Kotta, Jonne (2016). Specialization among amphipods: the invasive Gammarus tigrinus has narrower niche space compared to native gammarids. Ecosphere, 7 (6), 1−16. DOI: 10.1002/ecs2.1306.
1.1.
2016
Reisalu, G.; Kotta, J.; Herkül, K.; Kotta, I. (2016). The invasive amphipod Gammarus tigrinus Sexton, 1939 displaces native gammarid amphipods from sheltered macrophyte habitats of the Gulf of Riga. Aquatic Invasions, 11 (1), 45−54. DOI: 10.3391/ai.2016.11.1.05.
1.1.
2016
Lyons, D.; Arvanitidis, C.; Blight, A.; Chatzinikolaou, E.; Guy-Haim, T.; Kotta, J.; Queirós, A.; Rilov, G.; Somerfield, P.; Crowe, T. (2016). There are no whole truths in meta-analyses: all their truths are half truths. Global Change Biology, 22, 968−971. DOI: 10.1111/gcb.12989.
1.1.
2016
Lauringson, V.; Kotta J. (2016). Mussels of a marginal population affect the patterns of ambient macrofauna: A case study from the Baltic Sea. Marine Environmental Research, 116, 10−17. DOI: 10.1016/j.marenvres.2016.02.010.
1.1.
2016
Holopainen, R.; Lehtiniemi, M.; Meier, M.H.E.; Albertsson, J.; Gorokhova, E.; Kotta, J.; Viitasalo, M. (2016). Impacts of changing climate on the non-indigenous invertebrates in the northern Baltic Sea by end of the twenty-first century. Biological Invasions, xx−xx. DOI: 10.1007/s10530-016-1197-z.
1.1.
2016
Nurkse, K.; Kotta, J.; Orav-Kotta, H.; Ojaveer, H. (2016). A successful non-native predator, round goby, in the Baltic Sea: generalist feeding strategy, diverse diet and high prey consumption. Hydrobiologia, x−x. DOI: 10.1007/s10750-016-2795-6.
1.1.
2016
Lennuk, L.; Kotta, J.; Taits, K.; Lauringson, V.; Jänes, H. (2016). Which environmental scales and factors matter for mesozooplankton communities in a shallow brackish water ecosystem? Journal of Plankton Research, 38 (1), 139−153. DOI: 10.1093/plankt/fbv111.
3.2.
2016
Kotta, Jonne; Korpinen, Samuli; Orlova, Marina; Pärnoja, Merli (2016). Deep bottoms. Shallow and littoral zones. In: Raateoja, M. & Setälä, O. (eds.). The Gulf of Finland assessment. Reports of the Finnish Environmental Institute, 27, 208−2011.
3.2.
2016
Lehtiniemi, Maiju; Antsulevich, Alexander; Kotta, Jonne; Maximov, Alexey; Ojaveer, Henn; Orlova, Marina (2016). Non-indigenous species. In: Raateoja, M. & Setälä, O. (eds.). The Gulf of Finland assessment. Reports of the Finnish Environmental Institute, 27, 264−273.
3.4.
2016
Kuprijanov,I; Kotta, J.; Herkül, K. (2016). Ecological niche differentiation between native and alien caridean shrimps in the northern Baltic Sea. 51-st European Marine Biology Symposium, Rhodes, 29.09.2016. University of Athens, 75.
1.1.
2015
Jänes, H.; Kotta, J.; Herkül, K. (2015). High fecundity and predation pressure of the invasive Gammarus tigrinus cause decline of indigenous gammarids. Estuarine Coastal and Shelf Science, 165, 185−189. DOI: 10.1016/j.ecss.2015.05.014.
1.1.
2015
Kotta, J.; Oganjan, K.; Lauringson, V.; Pärnoja, M.; Kaasik, A.; Rohtla, L.; Kotta, I.; Orav-Kotta, H. (2015). Establishing functional relationships between abiotic environment, macrophyte coverage, resource gradients and the distribution of Mytilus trossulus in a brackish non-tidal environment. PLoS ONE, 10 (8), e0136949. DOI: 10.1371/journal.pone.0136949.
1.1.
2015
Nurkse, K.; Kotta, J.; Orav-Kotta, H.; Pärnoja, M.; Kuprijanov, I. (2015). Laboratory experiment on the habitat occupancy of the crab Rhithropanopeus harrisii (Gould) in an invaded ecosystem: The north-eastern Baltic Sea. Estuarine Coastal and Shelf Science, 154, 152−157. DOI: 10.1016/j.ecss.2014.12.046.
1.1.
2015
Kuprijanov, Ivan; Kotta, Jonne; Lauringson, Velda; Herkül, Kristjan (2015). Trophic interactions between native and alien palaemonid prawns and an alien gammarid in a brackish water ecosystem. Proceedings of the Estonian Academy of Sciences, 64 (4), 518−524. DOI: 10.3176/proc.2015.4.06.
1.1.
2015
Ojaveer, H.; Kotta, J. (2015). Ecosystem impacts of the widespread non-indigenous species in the Baltic Sea: literature survey evidences major limitations in knowledge. Hydrobiologia, 750 (1), 171−185. DOI: 10.1007/s10750-014-2080-5.
1.1.
2015
Kotta, J.; Kotta, I.; Bick, A.; Bastrop, R.; Väinölä, R. (2015). Modelling habitat range and seasonality of a new, non-indigenous, polychaete Laonome sp. (Sabellida, Sabellidae) in Pärnu Bay, the north-eastern Baltic Sea. Aquatic Invasions, 10 (3), 275−285. DOI: 10.3391/ai.2015.10.3.03.
1.1.
2015
Cusson, M.; Crowe, T. P.; Araújo, R.; Arenas, F.; Aspen, R.; Bulleri, F.; Davoult, D.; Dyson, K.; Fraschetti, S.; Herkül, K.; Hubas, C.; Jenkins, S.; Kotta, J.; Kraufvelin, P.; Migné, A.; Molis, M.; Mulholland, O.; Noel, M.-L. J. L.; Paterson, D. M.; Saunders, J. ... Benedetti-Cecchi, L. (2015). Relationships between biodiversity and the stability of marine ecosystems: comparisons at a European scale using meta-analysis. Journal of Sea Research, 68, 5−14. DOI: 10.1016/j.seares.2014.08.004.
1.1.
2015
Lennuk, L.; Kotta, J.; Teeveer, K.; Taits, K. (2015). The short-term effects of crude oil on the survival of different size-classes of cladoceran Daphnia magna (Straus, 1820). Oceanologia, 57 (1), 71−77. DOI: 10.1016/j.oceano.2014.10.003.
1.1.
2015
Maggi, E.; Benedetti-Cecchi, L.; Castelli, A.; Chatzinikolaou, E.; Crowe, T.; Ghedini, G.; Kotta, J.; Lyons, D.; Ravaglioli, C.; Rilov, G.; Rindi, L.; Bulleri, F. (2015). Ecological impacts of invading seaweeds: a meta-analysis of their effects at different trophic levels. Diversity and Distributions, 21 (1), 1−12. DOI: 10.1111/ddi.12264.
1.1.
2015
Liversage, Kiran; Kotta, Jonne (2015). Disturbance-related patterns on unstable rocky benthos of the eastern Baltic coast. Proceedings of the Estonian Academy of Sciences, 64, 53−61. DOI: 10.3176/proc.2015.1.07.
2.5.
2015
Raudsepp, Urmas; Jaagus, Jaak; Alari, Victor; Arula, Timo; Järvet, Arvo; Kont, Are; Kotta, Jonne; Kull, Ain; Laanemets, Jaan; Maljutenko, Ilja; Männik, Aarne; Reihan, Alvina; Rõõm, Rein; Sepp, Mait; Suursaar, Ülo; Tamm, Ottar; Tamm, Toomas; Tõnisson, Hannes (2015). Eesti kliima ja keskkonnaseisundi võimalike muutuste hindamine atmosfääri-, mere- ja jõgede äravoolu dünaamiliste mudelite tulemuste põhjal (ESTKLIIMA). Andres Tõnisson (Toim.). Keskkonnakaitse ja -tehnoloogia teadus- ja arendustegevuse programmi teaberaamat 2010-2015 (88−94). Eesti Teadusagentuur.
5.2.
2015
Lokko, Külli; Virro, Taavi; Kotta, Jonne (2015). Role of environmental parameters defining seasonal variability in the dominance structure of psammic rotifer communities. XIV. Rotifera. Book of abstracts: XIV International Rotifer Symposium. České Budějovice, Czech Republic, 30 August – 4 September 2015. Ed. Šorf, M.; Devetter, M. České Budějovice: HERBIA s.r.o, 38−39.
1.1.
2014
Kotta, J.; Remm, K.; Vahtmäe, E.; Kutser, T.; Orav-Kotta, H. (2014). In-air spectral signatures of the Baltic Sea macrophytes and their statistical separability. Journal of Applied Remote Sensing, 8, 083634. DOI: 10.1117/1.JRS.8.083634.
1.1.
2014
Lokko, K.; Virro, T.; Kotta, J. (2014). Taxonomic composition of zoopsammon in the fresh and brackish waters of Estonia, the Baltic province ecoregion of Europe. Estonian Journal of Ecology, 63 (4), 242−261. DOI: 10.3176/eco.2014.4.04.
1.1.
2014
Lokko, K.; Kotta, J.; Virro, T. (2014). Seasonal trends in horizontal and vertical patterns of zoopsammon in the brackish Baltic Sea in relation to key environmental variables. Proceedings of the Biological Society of Washington, 127 (1), 58−77. DOI: 10.2988/0006-324X-127.1.58.
1.1.
2014
Kotta, J.; Torn, K.; Reisalu, G.; Veber, T. (2014). Relationships between mechanical disturbance and biomass of the invasive amphipod Gammarus tigrinus within a charophyte dominated macrophyte community. Marine Ecology, 35, 11−18. DOI: 10.1111/maec.12073.
1.1.
2014
Kotta, J.; Möller, T.; Orav-Kotta, H.; Pärnoja, M. (2014). Realized niche width of a brackish water submerged aquatic vegetation under current environmental conditions and projected influences of climate change. Marine Environmental Research, 102, 88−101. DOI: 10.1016/j.marenvres.2014.05.002.
1.1.
2014
Pärnoja, Merli; Kotta, Jonne; Orav-Kotta, Helen (2014). Effect of short-term elevated nutrients and mesoherbivore grazing on photosynthesis of macroalgal communities. Proceedings of the Estonian Academy of Sciences. Ecology, 63 (1), 93−103. DOI: 10.3176/proc.2014.1.12.
1.1.
2014
Lauringson, Velda; Kotta, Jonne; Orav-Kotta, Helen; Kaljurand, Kaire (2014). Diet of mussels Mytilus trossulus and Dreissena polymorpha in a brackish nontidal environment. Marine Ecology, 35 (1), 56−66. DOI: 10.1111/maec.12120.
1.1.
2014
Pärnoja, M.; Kotta, J.; Orav-Kotta, H.; Paalme, T. (2014). Comparisons of individual and community photosynthetic production indicate light limitation in the shallow water macroalgal communities of the northern Baltic Sea. Marine Ecology, 35, 19−27. DOI: 10.1111/maec.12074.
1.1.
2014
Schagerström, E.; Forslund, H.; Kautsky, L.; Pärnoja, M.; Kotta, J. (2014). Does thalli complexity and biomass affect the associated flora and fauna of two co-occurring Fucus species in the Baltic Sea? Estuarine Coastal and Shelf Science, 149, 187−193. DOI: 10.1016/j.ecss.2014.08.022.
1.1.
2014
Kotta, J.; Möller, T. (2014). Linking nutrient loading, local abiotic variables, richness and biomasses of macrophytes, and associated invertebrate species in the north-eastern Baltic Sea. Estonian Journal of Ecology, 63 (3), 145−167. DOI: 10.3176/eco.2014.3.03.
1.1.
2014
Simm, M.; Kotta, J.; Jänes, H. (2014). Mean weight and total biomass of zooplankton as a core indicator of biodiversity of the MSFD: An example of the Gulf of Riga. Estonian Journal of Ecology, 63 (4), 232−241. DOI: 10.3176/eco.2014.4.03.
1.1.
2014
Lyons, D.A.; Arvanitidis, C.; Blight, A.J.; Chatzinikolaou, E.; Guy-Haim, T.; Kotta, J.; Orav-Kotta, H.; Queirós, A.M.; Rilov, G.; Somerfield, P.J.; Crowe, T.P. (2014). Macroalgal blooms alter community structure and primary productivity in marine ecosystems. Global Change Biology, 20 (9), 2712−2724. DOI: 10.1111/gcb.12644.
1.2.
2014
Möller, T.; Kotta, J.; Martin, G. (2014). Spatiotemporal variability in eelgrass Zostera marina L. in the northeastern Baltic Sea: Canopy structure and associated macrophyte and invertebrate communities. Estonian Journal of Ecology, 63 (2), 90−108. DOI: 10.3176/eco.2014.2.03.
1.2.
2014
Kovtun-Kante, A.; Torn, K.; Kotta, J. (2014). In situ production of charophyte communities under reduced light conditions in a brackish water ecosystem. Estonian Journal of Ecology, 63 (1), 28−38. DOI: 10.3176/eco.2014.1.03.
5.2.
2014
Lokko, Külli; Virro, Taavi; Kotta, Jonne (2014). Seasonal variability in the diversity of psammic testate amoebae in the Estonian fresh and brackish waters. Abstracts & Programme: 7th International Symposium on Testate Amoebae. 8‒12 September 2014, Poznań, Poland. Ed. Marcisz, K. Poznań, 73.
1.1.
2013
Lokko, K.; Virro, T.; Kotta, J. (2013). Testing effects of shore height level, sediment characteristics and vegetation cover on the seasonality of zoopsammon communities in the two boreal lakes differing in their trophic state. Hydrobiologia, 700 (1), 1−8. DOI: 10.1007/s10750-012-1210-1.
1.1.
2013
Zettler, M.L.; Proffitt, C.E.; Darr, A.; Degraer, S.; Devriese, L.; Greathead, C.; Kotta, J.; Magni, P.; Martin, G.; Reiss, H.; Speybroeck, J.; Tagliapietra, D.; Van Hoey, G.; Ysebaert, T. (2013). On the myths of indicator species: issues and further consideration in the use of static concepts for ecological applications. PLoS ONE, 8 (10), e78219. DOI: 10.1371/journal.pone.0078219.
1.1.
2013
Kotta, J.; Pärnoja, M.; Katajisto, T.; Lehtiniemi, M.; Malavin, S.A.; Reisalu, G.; Panov, V.E. (2013). Is a rapid expansion of the invasive amphipod Gammarus tigrinus Sexton, 1939 associated with its niche selection: a case study in the Gulf of Finland, the Baltic Sea. Aquatic Invasions, 8 (3), 319−332. DOI: 10.3391/ai.2013.8.3.08.
1.1.
2013
Kotta, J.; Kutser, T.; Teeveer, K.; Vahtmäe, E.; Pärnoja, M. (2013). Predicting Species Cover of Marine Macrophyte and Invertebrate Species Combining Hyperspectral Remote Sensing, Machine Learning and Regression Techniques. PLoS ONE, 8 (6), e63946. DOI: 10.1371/journal.pone.0063946.
1.1.
2013
Järv, L.; Kotta, J.; Simm, M. (2013). Relationship between biological characteristics of fish and their contamination with trace metals: a case study of perch Perca fluviatilis L. in the Baltic Sea. Proceedings of the Estonian Academy of Sciences, 62 (3), 193−201. DOI: 10.3176/proc.2013.3.05.
1.1.
2013
Crowe, T. P.; Cusson, M.; Bulleri, F.; Davoult, D.; Arenas, F.; Aspden, R.; Benedetti-Cecchi, L.; Bevilacqua, S.; Davidson, I.; Defew, E.; Fraschetti, S.; Golléty, C.; Griffin, J. N.; Herkül, K.; Kotta, J.; Migné, A.; Molis, M.; Nicol, S. K.; Noël, L. M.-L. J.; Sousa Pinto, I. ... Jenkins, S. (2013). Large-scale variation in combined impacts of canopy loss and disturbance on community structure and ecosystem functioning. PLoS ONE, 8 (6), e66238. DOI: 10.1371/journal.pone.0066238.
1.1.
2013
Herkül, K.; Kotta, J.; Kutser, T.; Vahtmäe, E. (2013). Relating remotely sensed optical variability to marine benthic biodiversity. PLoS ONE, 8 (2), e55624. DOI: 10.1371/journal.pone.0055624.
1.1.
2013
Paalme, T.; Kotta, J.; Kersen, P. (2013). Does the growth rate of drifting Furcellaria lumbricalis and Coccotylus truncatus depend on their proportion and density. Proceedings of the Estonian Academy of Sciences, 62 (2), 141−147. DOI: 10.3176/proc.2013.2.08.
1.1.
2013
Wernberg, T.; Thomsen, M. S.; Kotta, J. (2013). Complex plant-herbivore-predator interactions in a brackish water seaweed habitat. Journal of Experimental Marine Biology and Ecology, 449, 51−56. DOI: 10.1016/j.jembe.2013.08.014.
1.2.
2013
Kuprijanov, I; Kotta, J (2013). First evidence on the epiphytic macroalga Pylaiella littoralis on the prawn Palaemon adspersus. Estonian Journal of Ecology, 60, 287−291.
1.2.
2013
Kotta, J. (2013). Water salinity and benthic macrophyte communities are the key variables defining the distribution pattern of benthic faunal assemblages in the shallow water areas of the Gulf of Riga. Estonian Journal of Ecology, 62 (2), 107−120. DOI: 10.3176/eco.2013.2.03.
1.2.
2013
Martin, G.; Kotta, J.; Möller, T.; Herkül, K. (2013). Spatial distribution of marine benthic habitats in the Estonian coastal sea, northeastern Baltic Sea. Estonian Journal of Ecology, 62, 165−191.
1.2.
2013
Katajisto, T.; Kotta, J.; Lehtiniemi, M.; Malavin, S. A.; Panov, V. E. (2013). Palaemon elegans Rathke, 1837 (Caridea: Palaemonoidea: Palaemonidae) established in the Gulf of Finland, the north-eastern Baltic Sea. BioInvasions Records, 2 (2), 125−132.
3.1.
2013
Martin, Georg; Kotta, Jonne; Aps, Robert; Kopti, Madli; Martin, Kai; Remmelgas, Laura; Kuris, Merle (2013). Marine spatial planning as a tool for promoting sustainable economic development including tourism and recreation in a coastal area: an example from Pärnu Bay, NE Baltic Sea. WIT Transactions on Ecology and the Environment, 173, 393−404. DOI: 10.2495/SDP130331.
3.1.
2013
Kotta, J.; Orav-Kotta, H.; Pärnoja, M. (2013). Role of physical water properties and environmental disturbances on the diversity of coastal macrophyte and invertebrate communities in a brackish water ecosystem. In: WIT Transactions on Ecology and the Environment (77−88). WIT Press. DOI: 10.2495/CP130071.
3.5.
2013
Pärnoja, Merli; Kotta, Jonne; Kaljurand, Kaire; Martin, Georg (2013). Scientific diving as a research tool for mapping reefs in the northeastern Baltic Sea. PROCEEDINGS JOINT INTERNATIONAL SCIENTIFIC DIVING SYMPOSIUM AMERICAN ACADEMY OF UNDERWATER SCIENCES and EUROPEAN SCIENTIFIC DIVING PANEL: 2013 AAUS/ESDP International Diving for Science Symposium, Curacao, Netherlands Antilles, October 23-27, 2013.
5.2.
2013
Lokko, Külli; Kotta, Jonne; Virro, Taavi (2013). Seasonal variability, horizontal and vertical distribution of zoopsammon in the Eastern Baltic Sea. In: The Future of Meiofauna Study. 15th International Meiofauna Conference. Abstracts (49, 132). 15th International Meiofauna Conference. Seoul, Korea, 22–26 July 2013. Hanyang University, Ansan, Korea.
5.2.
2013
Kotta, J.; Pärnoja, M.; Orav-Kotta, H.; Kotta, I. (2013). Comparison of photosynthetic production of the brown seaweed Fucus vesiculosus and Fucus radicans in the Baltic Sea. Program & Abstracts: 21th International Seaweed Symposium, 21.04.−26.04.2013, Bali, Indonesia,. x, 90.
1.1.
2012
Lauringson, V.; Kotta, J.; Kersen, P.; Leisk, Ü.; Orav-Kotta, H.; Kotta, I. (2012). Use case of biomass-based benthic invertebrate index for brackish waters in connection to climate and eutrophication. Ecological Indicators, 12, 123−132.
1.1.
2012
Thomsen, M.S.; Wernberg, T.; Engelen, A.H.; Tuya, F.; Vanderklift, M.A.; Holmer, M.; McGlathery, K.J.; Arenas, F.; Kotta, J.; Silliman, B.R. (2012). A meta-analysis of seaweeds impacts on seagrasses: generalities and knowledge gaps. PLoS ONE, 7 (1), 21−28. DOI: 10.1371/journal.pone.0028595.
1.1.
2012
Arula, T.; Kotta, J.; Lankov, A.; Simm, M.; Põlme, S. (2012). Diet composition and feeding activity of larval spring-spawning herring: importance of environmental variability. Journal of Sea Research, 68, 33−40. DOI: 10.1016/j.seares.2011.12.003.
1.1.
2012
Bulleri, F.; Benedetti-Cecchi, L.; Cusson, M.; Maggi, E.; Arenas, F.; Aspden, R.; Bertocci, I.; Crowe, T. P.; Davoult, D.; Eriksson, B. K.; Fraschetti, S.; Gollety, C.; Griffin, J.; Jenkins, S. R.; Kotta, J.; Kraufvelin, P.; Molis, M.; Sousa Pinto, I.; Terlizzi, A.; Valdivia, N. ... Paterson, D. M. (2012). The temporal stability of European rocky shore assemblages: variation across a latitudinal gradient and the role of habitat-formers. Oikos, 121 (11), 1801−1809. DOI: 10.1111/j.1600-0706.2011.19967.x.
1.1.
2012
Vahtmäe, Ele; Kutser, Tiit; Kotta, Jonne; Pärnoja, Merli; Möller, Tiia; Lennuk, Lennart (2012). Mapping Baltic Sea shallow water environments with airborne remote sensing. Oceanology, 52 (6), 803−809. DOI: 10.1134/S0001437012060148.
1.1.
2012
Leiger, R.; Aps, R.; Kotta, J.; Orviku, Ü.K.; Pärnoja, M.; Tõnisson, H. (2012). Relationship between shoreline substrate type and sensitivity of seafloor habitats at risk to oil pollution. Ocean & Coastal Management, 66, 12−18. DOI: 10.1016/j.ocecoaman.2012.05.004.
1.2.
2012
Herkül, Kristjan; Kotta, Jonne (2012). Assessment of the ecological impact of an oil spill on shallow brackish-water benthic communities: a case study in the northeastern Baltic Sea. Estonian Journal of Ecology, 61 (3), 173−189. DOI: 10.3176/eco.2012.3.02.
1.2.
2012
Kotta, J.; Lauringson, V.; Kaasik, A.; Kotta, I. (2012). Defining the coastal water quality in Estonia based on benthic invertebrate communities. Estonian Journal of Ecology, 61 (2), 86−105. DOI: 10.3176/eco.2012.2.02.
1.2.
2012
Kotta, J.; Kuprijanov, I. (2012). The first finding of the palaemonid shrimp Palaemon elegans Rathke, 1837 in the Estonian coastal sea. Estonian Journal of Ecology, 61 (2), 148−153.
1.2.
2012
Rilov, G.; Mant, R.; Lyons, D.; Bulleri, F.; Benedetti-Cecchi, L.; Kotta, J.; Queiros, A.; Chatzinikolaou, E.; Crowe, T.; Guy-Haim, T. (2012). How strong is the effect of invasive ecosystem engineers on the distribution patterns of local species, the local and regional biodiversity and ecosystem functions? A Systematic Review Protocol. Environmental Evidence, 1 (10), 0. DOI: 10.1186/2047-2382-1-10.
1.2.
2012
Bulleri, F.; Mant, R.; Benedetti-Cecchi, L.; Chatzinikolaou, E.; Crowe, T.; Kotta, J.; Lyons, D.; Rilov, G.; Maggi, E. (2012). The effects of exotic seaweeds on native benthic assemblages: variability between trophic levels and influence of background environmental and biological conditions. Environmental Evidence, 1 (8), 0. DOI: 10.1186/2047-2382-1-8.
1.2.
2012
Kotta, Jonne; Ojaveer, Henn (2012). Rapid establishment of the alien crab Rhithropanopeus harrisii (Gould) in the Gulf of Riga. Estonian Journal of Ecology, 61 (4), 293−298. DOI: 10.3176/eco.2012.4.04.
1.2.
2012
Lyons, D.A.; Mant, R.; Bulleri, F.; Kotta, J.; Rilov, G.; Crowe, T. (2012). What are the effects of macroalgal blooms on the structure and functioning of marine ecosystems? A Systematic Review Protocol. Environmental Evidence, xx−xx.
1.1.
2011
Verliin, A.; Kotta, J.; Orav-Kotta, H.; Saks, L.; Vetemaa, M. (2011). Food selection of Coregonus lavaretus (L.) in a brackish water ecosystem. Journal of Fish Biology, 78 (2), 540−551. DOI: 10.1111/j.1095-8649.2010.02870.x.
1.1.
2011
Paalme, T.; Kotta, J.; Kersen, P.; Martin, G.; Kukk, H.; Torn, K. (2011). Inter-annual variations in biomass of loose lying algae Furcellaria-Coccotylus community: the relative importance of local versus regional environmental factors in the West Estonian Archipelago. Aquatic Botany, 95 (2), 146−152.
1.1.
2011
Kovtun, A.; Torn, K.; Martin, G.; Kullas, T.; Kotta, J.; Suursaar, Ü. (2011). Influence of abiotic environmental conditions on spatial distribution of charophytes in the coastal waters of West Estonian Archipelago, Baltic Sea. Journal of Coastal Research, 412−416.
1.1.
2011
Kotta, J.; Orav-Kotta, H.; Herkül, K.; Kotta, I. (2011). Habitat choice of the invasive Gammarus tigrinus and the native Gammarus salinus indicates weak interspecific competition. Boreal Environment Research, 16, 64−72.
1.1.
2011
Ojaveer, H.; Kotta, J.; Põllumäe, A.; Põllupüü, M.; Jaanus, A.; Vetemaa, M. (2011). Alien species in a brackish water temperate ecosystem: annual-scale dynamics in response to environmental variability. Environmental Research, 111 (7), 933−942. DOI: 10.1016/j.envres.2011.03.002.
1.1.
2011
Vahtmäe, E.; Kutser, T.; Kotta, J.; Pärnoja, M. (2011). Detecting patterns and changes in a complex benthic environment of the Baltic Sea. Journal of Applied Remote Sensing, 5, 053559-1−053559-18. DOI: 10.1117/1.3653271.
1.1.
2011
Herkül, K.; Kotta, J.; Pärnoja, M. (2011). Effect of physical disturbance on the soft sediment benthic macrophyte and invertebrate community in the northern Baltic Sea. Boreal Environment Research, 16, 209−219.
1.1.
2011
Järv, L.; Kotta, J.; Kotta, I.; Raid, T. (2011). Linking the structure of benthic invertebrate communities and the diet of native and invasive fish species in a brackish water ecosystem. Annales Zoologici Fennici, 48 (3), 129−141.
1.1.
2011
Kersen, P.; Kotta, J.; Bučas, M.; Kolesova, N.; Deķere, Z. (2011). Epiphytes and associated fauna on the brown alga Fucus vesiculosus in the Baltic and the North Seas in relation to different abiotic and biotic variables. Marine Ecology, 32, 1, 87−95.
1.1.
2011
Conley, D. J.; Carstensen, J.; Aigars, J.; Axe, P.; Bonsdorff, E.; Eremina, T.; Haahti, B.-M.; Humborg, C.; Jonsson, P.; Kotta, J.; Lännegren, C.; Larsson, U.; Maximov, A.; Rodriguez Medina, M.; Lysiak-Pastuszak, E.; Remeikaité-Nikiené, N.; Walve, J.; Wilhelms, S.; Zillén, L. (2011). Hypoxia is increasing in the coastal zone of the Baltic Sea. Environmental Science & Technology, 45 (16), 6777−6783. DOI: 10.1021/es201212r.
1.2.
2011
Kuprijanov, I.; Kotta, J.; Pärnoja, M.; Herkül, K.; Kersen, P. (2011). Scale-specific effects of environmental variables on benthic macrophyte and invertebrate communities in the Vaindloo area, the central Gulf of Finland. Estonian Journal of Ecology, 60, 4−17.
3.2.
2011
Kotta, J.; Ojaveer, H. (2011). Populatsioonid, kooslused ja ökosüsteemid muutuvates loodus- ja inimmõju tingimustes. Soomere, T.; Nõges, T.; Help, H.-L.; Jakobson, S.; Rebo, Ü.; Varlamova, G. (Toim.). TEADUSMÕTE EESTIS (VII) MERI. JÄRVED. RANNIK (13−23). . Eesti Teaduste Akadeemia Kirjastus.
3.3.
2011
Ojaveer, H.; Eek, L.; Kotta, J. (2011). Vee võõrliikide käsiraamat. Keskkonnaministeerium.
5.2.
2011
Lokko, Külli; Virro, Taavi; Kotta, Jonne (2011). The structure of zoopsammon communities of Lake Võrtsjärv and Lake Saadjärv (Estonia): a pilot study. Food webs and climate change: Nordic Benthological Meeting VIII; Aalborg, Denmark; 9–12 May, 2011. Aalborg: Aalborg University, 29.
5.2.
2011
Kersen, Priit; Kotta, Jonne; Kotta, Ilmar (2011). Historical alteration in macrofaunal community in the NE Baltic Sea. 46th European Marine Biology Symposium (EMBS), 12-16 September, Rovinj, Croatia. , 31−31.
5.2.
2011
Arula, T.; Kotta, J.; Lankov, A.; Simm, M.; Põlme, S. (2011). Diet composition and feeding activity of larval spring-spawning herring: importance of environmental variability. 35th Annual Larval Fish Conference; Wilmington, North Carolina, USA; May 22-25. Ed. Fred Scharf; Jeff Buckel; Tom Lankford., x−x.
1.1.
2010
Torn, K.; Martin, G.; Kotta, J.; Kupp, M. (2010). Effects of different types of mechanical disturbances on a charophyte dominated macrophyte community. Estuarine Coastal and Shelf Science, 87 (1), 27−32. DOI: 10.1016/j.ecss.2009.12.006.
1.1.
2010
Kotta, J.; Orav-Kotta, H.; Herkül, K. (2010). Separate and combined effects of habitat-specific fish predation on the survival of invasive and native gammarids. Journal of Sea Research, 369−372. DOI: 10.1016/j.seares.2010.05.006.
1.2.
2010
Kotta, K.; Kotta, J. (2010). Instrument in interaction with pitch content of selected works by Brahms, Saint-Saens, Hindemith, and Shostakovich. Journal of Interdisciplinary Music Studies, 4, 86−97.
1.2.
2010
Kotta, J.; Kotta, I. (2010). The first finding of the Ponto-Caspian mysid shrimp Hemimysis anomala G. O. Sars, Mysidae in the Estonian coastal sea. Estonian Journal of Ecology, 59 (3), 230−236. DOI: 10.3176/eco.2010.3.05.
3.1.
2010
Möller, Tiia; Kotta, Jonne; Martin, Georg (2010). Mapping of structural and functional characteristics of reef habitats. IEEE Conference Proceedings: The First International Conference on Biodiversity and Invasion Control; Cancun, Mexico; March 7-13, 2010. Ed. Dini, Petre; Popescu, Manuela. IEEE, 150−154. DOI: 10.1109/BioSciencesWorld.2010.27.
3.1.
2010
Kotta, Jonne; Orav-Kotta, Helen; Paalme, Tiina (2010). In situ Evidence on the Role of Benthic Invertebrates on the Decomposition of Drifting Algal Mats in a Brackish Water Ecosystem. Proceedings Of The First International Conference On Biosciences, (Biosciencesworld 2010): 1st International Conference on Biosciences (BioSciencesWorld), MAR 07-13, 2010, Cancun, MEXICO. Ed. Dini, P.; Popescu, M. Los Alamitos: Ieee Computer Soc, 139−144. DOI: 10.1109/BioSciencesWorld.2010.25.
3.1.
2010
Orav-Kotta, Helen; Kotta, Jonne; Kaljurand, Kaire; Kotta, Ilmar (2010). Seasonal changes in biodeposition and grazing potential of the suspension feeding bivalve Mytilus trossulus. Proceedings Of The First International Conference On Biosciences, (Biosciencesworld 2010): 1st International Conference on Biosciences (BioSciencesWorld), MAR 07-13, 2010, Cancun, MEXICO. Ed. Dini, P.; Popescu, M. Los Alamitos: Ieee Computer Soc, 145−149. DOI: 10.1109/BioSciencesWorld.2010.26.
3.4.
2010
Fetissov, M.; Aps, R.; Kopti, M.; Kotta, J. (2010). Web application to support the process of marine spatial planning. ICES C.M. Documents 2010 (Nantes, France): ICES Annual Science Conference, 20-24 September 2010, Nantes, France. Copenhagen, 1−10.
1.1.
2009
Möller, T.; Kotta, J.; Martin, G. (2009). Effect of observation method on the perception of community structure and water quality in a brackish water ecosystem. Marine Ecology, 30, 105−112. DOI: 10.1111/j.1439-0485.2009.00325.x.
1.1.
2009
Tomczak, M.T.; Järv, L.; Kotta, J.; Martin, G.; Minde, A.; Müller-Karulis, B.; Põllumäe, A.; Razinkovas, A.; Strake, S.; Bucas, M. (2009). Analysis of trophic networks and carbon flows in South Eastern Baltic coastal ecosystems. Progress in Oceanography, 81, 111−131.
1.1.
2009
Lauringson, V.; Kotta, J.; Orav-Kotta, H.; Kotta, I.; Herkül, K.; Põllumäe, A. (2009). Comparison of benthic and pelagic suspension feeding in shallow water habitats of the northeastern Baltic Sea. Marine Ecology, 30, 43−55.
1.1.
2009
Orav-Kotta, H.; Kotta, J.; Herkül, K.; Kotta, I.; Paalme, T. (2009). Seasonal variability in the grazing potential of the invasive amphipod Gammarus tigrinus and the native amphipod Gammarus salinus in the northern Baltic Sea. Biological Invasions, 11 (3), 597−608.
1.1.
2009
Herkül, K.; Kotta, J. (2009). Effects of eelgrass (Zostera marina) canopy removal and sediment addition on sediment characteristics and benthic communities in the northern Baltic Sea. Marine Ecology, 30, 74−82.
1.1.
2009
Põllumäe, A.; Kotta, J.; Leisk, Ü. (2009). Scale-dependent effects of nutrient loads and climatic conditions on benthic and pelagic communities in the Gulf of Finland. Marine Ecology, 30, 20−32.
1.1.
2009
Veber, T.; Kotta, J.; Lauringson, V.; Kotta, I. (2009). Influence of the local abiotic environment, weather and regional nutrient loading on macrobenthic invertebrate feeding groups in a shallow brackish water ecosystem. Oceanologia, 51 (4), 541−559.
1.1.
2009
Kotta, J.; Kotta, I.; Simm, M.; Põllupüü, M. (2009). Separate and interactive effects of eutrophication and climate variables on the ecosystem elements of the Gulf of Riga. Estuarine Coastal and Shelf Science, 84, 509−518.
1.2.
2009
Kovtun, A.; Torn, K.; Kotta, J. (2009). Long-term changes in a northern Baltic macrophyte community. Estonian Journal of Ecology, 58, 270−285.
1.2.
2009
Orav-Kotta, H.; Kotta, J.; Kotta, I. (2009). Food competition between the benthic polychaete Hediste diversicolor and the semipelagic mysid Neomysis integer in the northern Baltic Sea. Estonian Journal of Ecology, 58, 324−331.
1.2.
2009
Kotta, J.; Herkül, K.; Kotta, I.; Orav-Kotta, H.; Aps, R. (2009). Response of benthic invertebrate communities to the large-scale dredging of Muuga Port. Estonian Journal of Ecology, 58, 286−296.
1.2.
2009
Kersen, P.; Orav-Kotta, H.; Kotta, J.; Kukk, H. (2009). Effect of abiotic environment on the distribution of attached and drifting red alga Furcellaria lumbricalis in the Estonian coastal sea. Estonian Journal of Ecology, 58 (4), 245−258.
1.2.
2009
Kotta, J.; Möller, T. (2009). Important scales of distribution patterns of the key benthic species in Gretagrund area, the central Gulf of Riga. Estonian Journal of Ecology, 58, 259−269.
1.2.
2009
Herkül, K.; Kotta, J.; Püss, T.; Kotta, I. (2009). Crustacean invasions in the Estonian coastal sea. Estonian Journal of Ecology, 58, 313−323.
3.1.
2009
Kotta, J.; Aps, R.; Orav-Kotta, H. (2009). Bayesian inference for predicting ecological water quality under different climate change scenarios. In: Management of natural resources, sustainable development and hazards. (173−184). . WIT Press.
3.1.
2009
Aps, R.; Fetissov, M.; Herkül, K.; Kotta, J.; Leiger, R.; Mander, Ü.; Suursaar, Ü. (2009). Bayesian inference for predicting potential oil spill related ecological risk. In: Guarascio, M., Brebbia and Garzia, F. (Eds.) Safety and Security Engineering III. In: M. Guarascio, C.A. Brebbia, F. Garzia (Ed.). WIT Transactions on the Built Environment (149−159). . WIT Press. DOI: 10.2495/SAFE090151.
3.1.
2009
Leiger, R.; Aps, R.; Fetissov, M.; Herkül, K.; Kopti, M.; Kotta, J.; Mander, Ü.; Suursaar, Ü. (2009). Oil accident response simulation: allocation of potential places of refuge. In: C.A. Brebbia, G. Benassai, G.R. Rodriguez (Ed.). Coastal Processes (247−258). . Southampton, Boston: WIT Press. (WIT Transactions on Ecology and the Environment). DOI: 10.2495/CP090221.
3.1.
2009
Aps, R.; Herkül, K.; Kotta, J.; Kotta, I.; Kopti, M.; Leiger, R.; Mander, Ü.; Suursaar, Ü. (2009). Bayesian inference for oil spill related Net Environmental Benefit Analysis. In: C.A.Brebbia, G.Benassai, G.R.Rodriguez (Ed.). Coastal Processes (235−246). . Southampton, Boston: WIT Press. (WIT Transactions on Ecology and the Environment). DOI: 10.2495/CP090211.
3.1.
2009
Kotta, J.; Witman, J. (2009). Diversity patterns and their causes. Regional scale. In: Wahl, M. (Ed.). Hard Bottom Communities: Patterns, Scales, Dynamics, Functions, Shifts (89−99). . Springer Verlag. (Ecological Studies).
3.4.
2009
Järv, L.; Kotta, J.; Drevs, T.; Jaanus, A.; Raid, T.; Järvik, A. (2009). The impact of selected Baltic ports on adjacent fish fauna: revealed effects and uncertainties. Proceedings of the 13th International Maritime association of the Mediteranean (IMAM 2009); Istanbul, Turkey, 12-15 October 2009, 3: 13th Congress of International Maritime Association of Mediteranean (IMAM 2009); Istanbul, Turkey; 12-15 October 2009. Ed. Guedes Soares, C. Isyanbul Technical University, 853−862. (Towards the Sustainable Marine Technology and Transportation ).
5.2.
2009
Kersen, P.; Kotta, J.; Bučas, M.; Kolesova, N.; Deķere, Z. (2009). Macro-epiphytic community patterns of Fucus vesiculosus in the Baltic Sea and the North Sea in relation to different abiotic and biotic variables. Marine Biology in Time and Space: Abstracts from the 44th European Marine Biology Symposium, University of Liverpool, Liverpool. 196 pp.: 44th EMBS, Liverpool, 7-11 september 2009. Ed. Frid, C.L.J., Green, J.A., Paramor, O.A.L., Robinson, L.A. & Watts P.C. Liverpool, 87−87.
1.1.
2008
Kotta, J.; Paalme, T.; Kersen, P.; Martin, G.; Herkül, K.; Möller, T. (2008). Density dependent growth of the red algae Furcellaria lumbricalis and Coccotylus truncatus in the West-Estonian Archipelago Sea, northern Baltic Sea. Oceanologia, 50 (4), 577−585.
1.1.
2008
Kotta, J.; Paalme, T.; Püss, T.; Herkül, K.; Kotta, I. (2008). Contribution of scale-dependent environmental variability on the biomass patterns of drift algae and associated invertebrates in the Gulf of Riga, northern Baltic Sea. Journal of Marine Systems, 74, S116−S123.
3.1.
2008
Kotta, J.; Lauringson, V.; Martin, G.; Simm, M.; Kotta, I.; Herkül, K.; Ojaveer, H. (2008). Gulf of Riga and Pärnu Bay. In: Schiewer, U. (Ed.). Ecology of Baltic Coastal waters (217−243). . Berlin: Springer. (Ecological Studies; 197).
3.1.
2008
Orviku, K.; Tõnisson, H.; Aps, R.; Kotta, J.; Kotta, I.; Martin, G.; Suursaar, Ü.; Tamsalu, R.; Zalesny, V. (2008). Environmental impact of port construction: Port of Sillamäe case study (Gulf of Finlad, Baltic Sea). 2008 IEEE/OES US/EU-Baltic International Symposium: US/EU-Baltic International Symposium "Ocean Observations, Ecosystem-Based Management & Forecasting"; Tallinn; 27-29 May, 2008. IEEE-Inst Electrical Electronics Engineers Inc, 350−359. DOI: 10.1109/BALTIC.2008.4625538.
3.1.
2008
Kotta, J.; Herkül, K.; Kotta, I.; Orav-Kotta, H.; Aps, R. (2008). Effects of harbour dredging on soft bottom invertebrate communities: does environmental variability affect the community responses? 2008 IEEE/OES US/EU-Baltic International Symposium: 2008 IEEE/OES US/EU-Baltic International Symposium "Ocean Observations, Ecosystem-Based Management & Forecasting"; Tallinn; 27-29 May, 2008. IEEE-Inst Electrical Electronics Engineers Inc, 320−325.
3.1.
2008
Kotta, J.; Jaanus, A.; Kotta, I. (2008). Haapsalu and Matsalu Bay. In: Schiewer, U. (Ed.). Ecology of Baltic Coastal waters (245−258). . Berlin: Springer. (Ecological Studies; 197).
3.1.
2008
Kotta, J.; Aps, R.; Herkül, K. (2008). Predicting ecological resilience of marine benthic communities facing a high risk of oil spills. In: Coastal Environment 2008 (101−110). . WIT Press. (WIT Transactions on Ecology and the Environment).
3.1.
2008
Lindén, E.; Lehikoinen, A.; Kotta, J.; Aps, R; Pitkänen, H.; Räike, A.; Korpinen, P.; Kuikka, S. (2008). EVAGULF – Protection of the aquatic communities in the Gulf of Finland: risk-based policymaking. 2008 IEEE/OES US/EU-Baltic International Symposium: 2008 IEEE/OES US/EU-Baltic International Symposium "Ocean Observations, Ecosystem-Based Management & Forecasting"; Tallinn; 27-29 May, 2008. IEEE-Inst Electrical Electronics Engineers Inc, 219−230.
5.2.
2008
Paalme, T.; Kotta, J.; Kersen, P. (2008). Does the growth rate of drifting Furcellaria lumbricalis and Coccotylus truncatus depend on algal density and shares? Marine Ecosystems - The contribution of Marine Biology for a sustainable future: 43rd European marine Biology Symposium; Ponta Delgada; 8-12 September, 2008. , 77.
5.2.
2008
Aps, R.; Kotta, J.; Herkül, K.; Kaljuste, O. (2008). Baltic fisheries as a spatial resource. International Council for the Exploration of the Sea, Annual Science Conference 2008; Halifax, NS Canada; 22-26 September 2008. , 1−9.
1.1.
2007
Lauringson, Velda, Mälton, Evely, Kotta, Jonne, Kangur, Külli, Orav-Kotta, Helen, Kotta, Ilmar (2007). Environmental factors influencing the biodeposition of the suspension feeding bivalve Dreissena polymorpha (Pallas): comparison of brackish and fresh water population. Estuarine Coastal and Shelf Science, 75, 459−467.
1.1.
2007
Põllumäe, A.; Kotta, J. (2007). Factors affecting zooplankton community of the Gulf of Finland, with respect to native and introduced predatory cladoceran interactions. Oceanologia, 49, 277−290.
1.1.
2007
Kotta, J.; Lauringson, V.; Kotta, I. (2007). Response of zoobenthic communities to changing eutrophication in the northern Baltic Sea. Hydrobiologia, 580 (1), 97−108. DOI: 10.1007/s10750-006-0462-z.
1.1.
2007
Ojaveer, H.; Gollasch, S.; Jaanus, A.; Kotta, J.; Laine, AO.; Minde, A.; Normant, M.; Panov, V. (2007). Chinese mitten crab Eriocheir sinensis in the Baltic Sea—a supply-side invader? Biological Invasions, 9 (4), 409−418. DOI: 10.1007/s10530-006-9047-z.
1.2.
2007
Kotta, J.; Martin, G.; Aps, R. (2007). Sensitivity of benthic vegetation and invertebrate functional guilds to oil spill and its use in oil contingency management related negotiation process. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 56 (4), 255−269.
1.2.
2007
Herkül, K.; Kotta, J. (2007). New records of the amphipods Chelicorophium curvispinum, Gammarus tigrinus, G. duebeni, and G. lacustris in the Estonian coastal sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 56 (4), 290−296.
1.2.
2007
Kotta, I.; Kotta, J.; Herkül, K. (2007). Seasonal changes in the population structure and life cycle of Neomysis integer in Pärnu Bay, northeastern Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 56 (4), 312−325.
5.2.
2007
Paalme, T; Kotta, J; Kersen, P; Martin, G; Kukk, H; Torn, K (2007). Importance of local and regional environmental factors in the dynamics of the loose-lying red algal community in the Northern Baltic Sea. Fourth European Phycological Congress, Oviedo, Spain, 23-27 July 2007. Taylor & Francis, 157.
5.2.
2007
Aps, R.; Kotta, J.; Leiger, R.; Martin, G.; Saat, T.; Suursaar, Ü.; Tulk, E (2007). Net Environmental Benefit Analysis - linking ecological values in the decision making process on oil spill response in the Gulf of Finland (Baltic Sea). ICES Annual Science Conference 2007; Helsinki; 17-21 September 2007. , C:10.
5.2.
2007
Linden, E.; Lehikoinen, A.; Kuikka, S.; Aps, R.; Kotta, J.; Martin, G.; Saat, T.; Pitkänen, H.; Räoke, A.; Korpinen, P.; Sipa, T.; Kaitala, S.; Jolma, A. (2007). EVAGULF – Protection of aquatic communities in the Gulf of Finland: risk-based policymaking. International Council for the Exploration of the Sea, Annual Science Conference 2007; Helsinki, Finland; 17-21 September 2007. , 1−16.
5.2.
2007
Kotta, J.; Paalme, T.; Kersen, P.; Möller, T.; Herkül, K. (2007). Effect of community structure on the seasonal growth of the red algae Furcellaria lumbricalis and Coccotylus truncatus in the West-Estonian Archipelago, Northern Baltic Sea. XIXth International Seaweed Symposium: 26-31 March 2007 Kobe, Japan. , 114.
1.1.
2006
Vahtmäe, Ele; Kutser, Tiit; Martin, Georg; Kotta, Jonne (2006). Feasibility of hyperspectral remote sensing for mapping benthic macroalgal cover in turbid coastal waters - a Baltic Sea case study. Remote Sensing of Environment, 101 (3), 342−351.
1.1.
2006
Kotta, J.; Orav-Kotta, H.; Paalme, T.; Kotta, I.; Kukk, H. (2006). Seasonal changes in situ grazing of the mesoherbivores Idotea baltica and Gammarus oceanicus on the brown algae Fucus vesiculosus and Pylaiella littoralis in the Central Gulf of Finland, Baltic Sea. Hydrobiologia, 554, 117−125.
1.1.
2006
Herkül, K.; Kotta, J.; Kotta, I.; Orav-Kotta, H. (2006). Effects of physical disturbance, isolation and key macrozoobenthic species on community development, recolonisation and sedimentation processes. Oceanologia, 48S, 267−282.
1.1.
2006
Herkül, K.; Kotta, J.; Kotta, I. (2006). Distribution and population characteristics of the alien talitrid amphipod Orchestia cavimana in relation to environmental conditions in the northeastern Baltic Sea. Helgoland Marine Research, 60 (2), 121−126. DOI: 10.1007/s10152-006-0030-y.
1.1.
2006
Kotta, J.; Kotta, I.; Simm, M.; Lankov, A.; Lauringson, V.; Põllumäe, A.; Ojaveer, H. (2006). Ecological consequences of biological invasions: three invertebrate case studies in the north-eastern Baltic Sea. Helgoland Marine Research, 60 (2), 106−112.
1.1.
2006
Lauringson, V.; Kotta, J. (2006). Influence of the thin drift algal mats on the distribution of macrozoobenthos in Koiguste Bay, NE Baltic Sea. Hydrobiologia, 554, 97−105.
1.1.
2006
Simm, M.; Roots, O.; Kotta, J.; Lankov, A.; Henkelmann, B.; Shen, H.; Schramm, K.-W. (2006). PCDD/Fs in sprat (Sprattus sprattus balticus) from the Gulf of Finland, the Baltic Sea. Chemosphere, 65 (9), 1570−1575.
1.2.
2006
Alenius, P.; Antsulevich, A.; Basova, S.; Berezina, N. A.; Haapasaari, H.; Jaanus, A.; Jolma, K.; Kauppila, P.; Knuutila, S.; Korhonen, M.; Kotta, J.; Laine, A.; Leivuori, M.; Lips, U.; Litvinchuk, L. F.; Maximov, A. A.; Norkko, A.; Orlova, M. I.; Peltonen, H.; Pönni, J. ... Verta, M. (2006). State of the Gulf of Finland. Report Series of the Finnish Institute of Marine Research, 55, 1−25.
3.2.
2006
Kotta, J; Herkül, K; Kotta, I; Orav-Kotta, H. (2006). Invasion history and distribution of the key benthic alien invertebrate species in the Estonian coastal sea. In: Ojaveer, H.; Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and ecological impacts (12−17). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series; 14).
3.2.
2006
Kotta, J.; Kotta, I.; Orav-Kotta, H.; Lauringson, V. (2006). Potential impacts of key invasive benthic invertebrate species. In: Ojaveer, H., Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and assessment of ecological impacts (53−56). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series ; 14).
3.2.
2006
Herkül, K.; Kotta, J., Kotta, I. (2006). Invasion history and distribution of the semi-terrestrial invasive amphipod Orchestia cavimana in the Estonian coastal sea. In: Ojaveer, H.; Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and assessment of ecological impacts (25−33). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series; 14).
3.2.
2006
Põllumäe, A.; Kotta, I.; Kotta, J. (2006). Port biological sampling as a tool for monitoring invasive species in high-risk areas of bioinvasions. In: Ojaveer, H., Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and assessment of ecological impacts (40−46). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series ; 14).
4.2.
2006
Ojaveer, H.; Kotta, J. (Eds.) (2006). Alien invasive species in the North-eastern Baltic Sea : population dynamics and ecological impacts. Tallinn: Eesti Mereinstituut.
5.2.
2006
Simm, M; Roots, O; Kotta, J. (2006). Levels of dioxins in the Estonian fish. Support to the Management of Gulf of Finland Ecosustem - Key topics of Scientific Research: Trilateral Estonian-Finnish-Russian co-operation on the protection of environment of the Gulf of Finland; Tallinn, Estonia; 22-23 November 2006. Tallinn, 29.
6.7.
2006
Bruin de, E. F. L. M.; Vliegenthart, F. J. L.; Shipper, P.; Pallo, T.; Antons, P.; Botterweg, T.; Reincke, K. J.; Boomen van den, R.; Kotta, J.; Vassiljev, A.; Perens, R.; Vallner, L.; Kivinukk, A. (2006). Harju sub-River Basin District Water Management Plan. 1−253.
3.1.
2005
Kotta, J.; Orav-Kotta, H.; Vuorinen, I. (2005). Field measurements on the variability in biodeposition and grazing pressure of suspension feeding bivalves in the northern Baltic Sea. In: R. Dame, S. Olenin (Ed.). The Comparative Roles of Suspension Feeders in Ecosystems (11−29). . Dodrecht: Springer.
3.3.
2005
Tomczak, M.; Järv, L.; Kotta, J.; Martin, G.; Minde, A.; Müller-Karulis, B.; Põllumäe, A.; Razinkovas, A.; Strake, S. (2005). Trophic networks and carbon flows in South Eastern Baltic coastal ecosystems. In: ICES CM 2005. CD-ROM. . Copenhagen.
3.3.
2005
Suursaar, Ü; Astok, V.; Kotta, J. (2005). Monitoring and assessment of the Estonian coastal sea in 1945-2003. In: Velner, H.-A. (ed.). Water protection of the Gulf of Finland and Estonian waterbodies (127-144). . Tallinn: TUT Press.
6.4.
2005
Kangur, M.; Kotta, J.; Kukk, T.; Kull, T.; Lilleleht, V.; Luig, J.; Ojaveer, H.; Paalme, T.; Vetemaa, M. (2005). Invasiivsed võõrliigid Eestis. . Tallinn: Keskkonnaministeerium.
1.1.
2004
Kotta, Jonne; Simm, Mart; Kotta, Ilmar; Kanošina, Inga; Kallaste, Kalle; Raid, Tiit (2004). Factors controlling long-term changes of the eutrophicated ecosystem of Pärnu Bay, Gulf of Riga. Hydrobiologia, 514, 259−268. DOI: 10.1023/B:hydr.0000018224.56324.44.
1.1.
2004
Kotta, J.; Torn, K.; Martin, G.; Orav-Kotta, H.; Paalme, T. (2004). Seasonal variation in invertebrate grazing on Chara connivens and C-tomentosa in Koiguste Bay, NE Baltic Sea. Helgoland Marine Research, 58 (2), 71−76.
1.1.
2004
Orav-Kotta, H.; Kotta, J. (2004). Food and habitat choice of the isopod Idotea baltica in the northeastern Baltic Sea. Hydrobiologia, 514, 79−85.
1.2.
2004
Paalme, Tiina; Martin, Georg; Kotta, Jonne; Kukk, Henn; Kaljurand, Kaire (2004). Distribution and dynamics of drifting macroalgal mats in Estonian coastal waaters during 1995-2003. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53 (4), 260−275.
1.2.
2004
Martin, G.; Kukk, E.; Kukk, H.; Kotta, J. (2004). Historical review of the literature on phytobenthic investigations in the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53, 236−250.
1.2.
2004
Kotta, J.; Martin, G. (2004). Foreword to the special issue on the Estonian coastal sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53 (4), 233−235.
1.2.
2004
Kotta, J.; Orav-Kotta, H.; Sandberg-Kilpi, E. (2004). Changes in the feeding behaviour of benthic invertebrates: effect of the introduced polychaete Marenzelleria viridis on the Baltic clam Macoma balthica. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53, 269−275.
1.2.
2004
Orav-Kotta, H.; Kotta, J.; Kotta, I. (2004). Comparison of macrozoobenthic communities between the 1960s and the 1990s-2000s in the Väinameri, NE Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology, 53 (4), 283−291.
5.2.
2004
Kotta, J.; Lauringson, V.; Kotta, I. (2004). Role of benthic diversity and physical environment on the stability of zoobenthos communities along the eutrophication gradient. Biologia Marina Mediterranea, 11, 30.
6.3.
2004
Kotta, J.; Kotta, I.; Orav-Kotta, H. (2004). Muuga lahe põhjaloomastik - looduslik muutlikkus ja inimmõju. Estonia Maritima (53−72). .
1.1.
2003
Kotta, J.; Olafsson, E. (2003). Competition for food between the introduced polychaete Marenzelleria viridis (Verrill) and the native amphipod Monoporeia affinis Lindstrom in the Baltic Sea. Journal of Sea Research, 50 (1), 27−35.
1.2.
2003
Kotta, J.; Martin, G.; Torn, K. (2003). Benthic communities of four selected habitat types in the sea area of Lahemaa National Park southern Gulf of Finland. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52 (3), 236−253.
1.2.
2003
Martin, G.; Torn, K.; Kotta, J.; Orav-Kotta, H. (2003). Estonian marine phytobenthos monitoring programme: preliminary results and future perspectives. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52 (2), 112−124.
1.2.
2003
Kotta, J.; Orav-Kotta, H.; Paalme, T.; Kotta, I.; Kukk, H. (2003). Benthos studies in the Estonian coastal sea during 1998-2001. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52 (2), 85−90.
1.2.
2003
Orav-Kotta, H.; Kotta, J. (2003). Seasonal variations in the grazing of Gammarus oceanicus, Idotea baltica, and Palaemon adspersus on benthic macroalgae. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 141−148.
1.2.
2003
Kotta, I.; Orav-Kotta, H.; Kotta, J. (2003). Macrozoobenthos assemblages in highly productive areas of the Estonian coastal sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 149−165.
1.2.
2003
Pitkänen, H.; Lehtoranta, J.; Peltonen, H.; Laine, A.; Kotta, J.; Kotta, I.; Moskalenko, P.; Mäkinen, A.; Kangas, P.; Perttilä, M.; Kiirikki, M. (2003). Benthic release of phosphorus and its relation to environmental conditions in the estuarial Gulf of Finland, Baltic Sea, in the early 2000s. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 173−192.
1.2.
2003
Kotta, J. (2003). Foreword to the special issue on Estonian coastal ecosystems: state, processes, and development. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 83−84.
3.5.
2003
Ojaveer, H.; Simm, M.; Kotta, J. (2003). Tulnukliikide tähtsus globaliseeruvas maailmas: veeökosüsteemid. Kaasaegse ökoloogia probleemid. Eesti IX Ökoloogiakonverentsi lühiartiklid: Eesti IX ökoloogiakonverents, 11.-12. IV 2003, Tartu. , 185−192.
1.1.
2002
Paalme, T.; Kukk, H.; Kotta, J.; Orav, H. (2002). 'In vitro'  and 'in situ' decomposition of nuisance macroalgae Cladophora glomerata and Pilayella littoralis . Hydrobiologia, 475-476 (1), 469−476. DOI: 10.1023/A:1020364114603.
1.1.
2002
Kotta, J.; Mohlenberg, F. (2002). Grazing impact of Mytilus edulis L. and Dreissena polymorpha (Pallas) in the Gulf of Riga, Baltic Sea estimated from biodeposition rates of algal pigments. Annales Zoologici Fennici, 39 (2), 151−160.
3.1.
2002
Zettler, M.L.; Daunys, D.; Kotta, J.; Bick, A. (2002). History and success of an invasion into the Baltic Sea: the polychaete Marenzelleria cf. viridis, development and strategies. Leppäkoski, E., Gollasch, S. & Olenin, S.. Invasive Aquatic Species of Europe – Distribution, Impacts and Management (66−75). . Dordrecht: Kluwer Academic Publishers.
3.2.
2002
Martin, G.; Torn, K.; Kotta, J.; Orav-Kotta, H. (2002). Rannikumere põhjataimestiku seire. Eesti keskkonnaseire : 2001, 95−97.
3.2.
2002
Kotta, J.; Kotta, I.; Kangas, P.; Laine, A.; Andersin, A.-B. (2002). Macrozoobenthos. Baltic Sea Environmental Proceedings, 82B, 83−86.
3.2.
2002
Ceitlina, M.; Kotta, J. (2002). Macrozoobenthos. Baltic Sea Environmental Proceedings, 82B, 94−97.
3.3.
2002
Jüssi, I.; Kannukene, L.; Kask, J.; Kotta, I.; Kotta, J.; Kukk, H.; Leito, T.; Mägi, E.; Mäss, V.; Nilson, E.; Peil, T.; Ploompuu, T.; Puurmann, E.; Rammul, Ü.; Ratas, U.; Rivis, R.; Truus, L. (2002). Alasti maailm: Kolga lahe saared. Tallinn: Säästva Eesti Instituut.
6.3.
2002
Kotta, I.; Kotta, J. (2002). Põhjaloomastik. Peil, T., Ratas, U., Nilson, E.. Alasti maailm Kolga lahe saared (47−48). . Tallinn: Säästva Eesti Instituut.
1.1.
2001
Kotta, J.; Orav, H. (2001). Role of benthic macroalgae in regulating macrozoobenthic assemblages in the Vainameri (north-eastern Baltic Sea). Annales Zoologici Fennici, 38 (2), 163−171.
1.1.
2001
Kotta, J.; Orav, H.; Sandberg-Kilpi, E. (2001). Ecological consequence of the introduction of the polychaete Marenzelleria cf. viridis into a shallow-water biotope of the northern Baltic Sea. Journal of Sea Research, 46, 273−280.
1.1.
2001
Kotta, J.; Boucher, G. (2001). Interregional variation of free-living nematode assemblages in tropical coral sands. Cahiers de Biologie Marine, 42 (4), 315−326.
1.2.
2001
Kotta, I.; Kotta, J. (2001). Vertical migrations of mysids in the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 50, 248−255.
1.2.
2001
Kotta, I.; Kotta, J. (2001). Distribution of mysids on the bank slopes in the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 50, 14−21.
6.3.
2001
Kotta, J. (2001). Tulnukliigid Läänemeres. Loodus, 14−15.
1.1.
2000
Kotta, J.; Paalme, T.; Martin, G.; Makinen, A. (2000). Major changes in macroalgae community composition affect the food and habitat preference of Idotea baltica. International Review of Hydrobiology, 85, 697−705.
1.2.
2000
Orav, H.; Kotta, J.; Martin, G. (2000). Factors affecting the distribution of benthic invertebrates in the phytal zone of the north-eastern Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 49(3), 253−269.
1.2.
2000
Orav, H.; Kotta, J.; Martin, G. (2000). Factors affecting the distribution of benthic invertebrates in the phytal zone of the north-eastern part Baltic Sea. In: Proceedings of the Estonian Academy of Sciences. Biology. Ecology. (253−269). . Tallinn: Estonian Academy Publishers.
1.2.
2000
Simm, M.; Kotta, J. (2000). Changes in copper and cadmium content of male herring in relation to spawning. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 49, 327−334.
1.2.
2000
Kotta, J. (2000). First record of the talitrid amphipod Orchestia cavimana in the northern Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 49 (2), 221−224.
1.2.
2000
Kotta, J.; Kotta, I.; Viitasalo, I. (2000). Effect of diffuse and point source nutrient supply on the low diverse macrozoobenthic communities of the northern Baltic Sea. Boreal Environment Research, 5, 235−242.
2.3.
2000
Kotta, Jonne (2000). Impact of eutrophication and biological invasions on the structure and functions of benthic macrofauna. (Tartu Ülikool.; Bioloogia-geograafiateaduskond.; Tartu Ülikool.; Zooloogia ja hüdrobioloogia institu). Tartu: Tartu University Press.
1.1.
1999
Ojaveer, H.; Lankov, A.; Eero, M.; Kotta, J.; Kotta, I.; Lumberg, A. (1999). Changes in the ecosystem of the Gulf of Riga from the 1970s to the 1990s. ICES Journal of Marine Science, 56, 33−40.
1.2.
1999
Kotta, Jonne; Kotta, Ilmar; Kask, Jüri (1999). Benthic animal communities of exposed bays in the outermost part of the Gulf of Finland. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 2, 107−116.
1.2.
1999
Kotta, J.; Kotta, I. (1999). Benthic animal communities around Osmussaar Island. In: Estonia Maritima (133−142). .
1.2.
1999
Kotta, I.; Kotta, J. (1999). Distribution and migration of mysids in the Gulf of Riga (Northern Baltic). Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 48 (4), 284−295.
6.3.
1999
Kotta, J. (1999). Ökoloogiline rulett merevees. Eesti Loodus, 343−344.
1.2.
1998
Kotta, J.; Kotta, I.; Martin, G.; Kukk, H. (1998). A survey of data published on the littoral zoobenthos of the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 47 (2), 83−97.
1.2.
1998
Kotta, J.; Orav, H.; Kotta, I. (1998). Distribution and filtration activity of Zebra mussel, Dreissena polymorpha (Pallas) in the Gulf of Riga and the Gulf of Finland. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 47, 32−41.
1.2.
1998
Kotta, J.; Kotta, I. (1998). Distribution and invasion ecology of Marenzelleria viridis (Verrill) in the Estonian coastal waters. In: Proceedings of the Estonian Academy of Sciences. Biology. Ecology. (210−217). . Tallinn: Estonian Academy Publishers.
3.3.
1996
Kukk, Henn; Martin, G.; Jaanus, A.; Martin, Jüri; Bogdanov, Verge; Põllumäe, A.; Kotta, Ilmar; Kotta, Jonne (1996). Merebioloogia. Keskkonnaseire 1995 (70−72). . Tallinn : EV KKM,: /.../.
6.7.
1996
Kotta, Jonne (1996). Regression between length and weight of Baltic Clam Macoma balthica(L.) (Mollusca) in relation to abiotic and biotic characteristics of the habitat. (Magistritöö). Tartu,: Tartu University Press.
1.2.
1995
Kotta, J.; Kotta, I. (1995). The state of macrozoobenthos of Pärnu Bay in 1991 as compared to 1959-1960. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 5, 26−37.
14.09.2021

Jonne Kotta

https://www.etis.ee/CV/Jonne_Kotta/est
7.06.1972
671 8935
+372505 6583
jonne@sea.ee

Teenistuskäik

Töökohad ja ametid
15.02.2021–...   
Tallinna Tehnikaülikool, Eesti Mereakadeemia, Vanemteadur (0,80)
01.01.2021–...   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, Eesti mereinstituut, mereökoloogia professor (1,00)
01.11.2019–30.01.2020   
Lõuna-Tshiili Ülikool, Külalisprofessor (1,00)
01.11.2018–31.12.2020   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, Eesti mereinstituut, mereökoloogia juhtivteadur (1,00)
01.02.2018–31.10.2018   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, Eesti mereinstituut, mereökoloogia juhtivteadur (1,00)
01.01.2018–28.02.2018   
Lõuna-Tshiili Ülikool, Külalisprofessor (1,00)
01.01.2016–31.01.2018   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, Eesti mereinstituut, mereökoloogia juhtivteadur (1,00)
01.01.2014–31.12.2015   
Lõuna-Tshiili Ülikool, juhtivteadur
01.03.2013–31.12.2015   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Eesti Mereinstituut, mereökoloogia juhtivteadur (1,00)
19.03.2011–28.02.2013   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Eesti Mereinstituut, merebioloogia vanemteadur (1,00)
01.01.2008–31.12.2014   
Lääne-Austraalia Ülikool, vanemteadur, korallide ja makrovetikate produktsioon, korallide filtreerimine, mitmekuused tööde tsüklid
01.01.2008–18.03.2011   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Eesti Mereinstituut, merebioloogia vanemteadur (1,00)
19.03.2006–31.12.2007   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Eesti Mereinstituut, merebioloogia vanemteadur (1,00)
01.01.2002–31.12.2003   
Euroülikool, lektor
19.03.2001–18.03.2006   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Eesti Mereinstituut, vanemteadur (1,00)
01.01.2001–31.12.2001   
Tallinna Pedagoogikaülikool, lektor
01.01.2001–31.12.2001   
Helsingi Ülikool, Soome, teadur, liikidevahelised interaktsioonid
01.01.2001–31.12.2006   
Tartu Ülikool, Tartu Ülikooli Eesti Mereinstituut, vanemteadur
01.01.2000–31.12.2000   
Helsingi Ülikool, Soome, teadur, invasiooniökoloogia
01.01.1999–31.12.1999   
BKA Saaremaa Keskus, mereökosüsteemide spetsialist
01.01.1999–31.12.1999   
Pariisi Loodusmuuseum, Prantsusmaa, teadur, troopiliste merede vabaeluviisiliste ümarusside süstemaatika
01.01.1999–31.12.1999   
Stokholmi Ülikool, Rootsi, teadur, invasiooniökoloogia
01.01.1997–31.12.1999   
Turu Ülikool, Soome, teadur, 4 kuust tsüklit, eksperimentaaltööd bentose- ja planktonikoosluste vahelistest interaktsioonidest
01.01.1996–31.12.2000   
Eesti Mereinstituut, teadur
01.01.1996–31.12.1996   
Taani Keskkonnauuringute Instituut, Taani, teadur, karpide toitumise hindamine
01.01.1995–31.12.1995   
Pariisi Loodusmuuseum, Prantsusmaa, teadur, troopiliste merede vabaeluviisiliste ümarusside süstemaatika
01.01.1994–31.12.1996   
Eesti Mereinstituut, nooremteadur
01.01.1993–31.12.1993   
Eesti Mereinstituut, insener
 
 
Haridustee
1996–2000   
Tartu Ülikool doktorantuur
1993–1996   
Tartu Ülikool magistriõpe
1989–1993   
Tartu Ülikool bakalaureuseõpe
 
 
Teadusorganisatsiooniline ja -administratiivne tegevus
2018−...   
Eesti esindaja ICES teadusnõukogus
2018−...   
Tartu Ülikooli Eesti Mereinstituudi teadusdirektor
2017−...   
Rahandusministeeriumi nõustamine mereruumi planeeringuga seotud tegevustes
2017−...   
Osalemine Maaelusministeeriumi arengukavade ja vesiviljelusega seotud töörühmade tegevuses
2015−...   
Eesti Teaduste Akadeemia toimetised, kaastoimetaja
2014−...   
Hydrobiologia toimetaja
2002−...   
HELCOM'i põhjaloomastiku töörühma (BEWG) esindaja, ICES kumulatiivsete mõjude töörühma liige, ICES uute liikide töörühma liige, ICES SGPROD töörühma liige, Eesti Malakoloogia Seltsi liige, Eesti Mereinstituudi teadusnõukogu liige

Kvalifikatsioon

Teaduskraadid
Jonne Kotta, Doctor's Degree, 2000, (sup) Toomas Saat, Impact of eutrophication and biological invasions on the structure and functions of benthic macrofauna, University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Chair of Hydrobiology.
 
 
Teaduspreemiad ja tunnustused
2021, Jonne Kotta, Eesti Vabariigi teaduspreemia Geo- ja bioteaduste valdkonnas "Mereelustik kliimamuutuste tõmbetuultes"
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B260 Hüdrobioloogia, mere-bioloogia, veeökoloogia, limnoloogia ; TÄPSUSTUS: Mereelustiku ruumiline ja ajaline varieeruvus
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B260 Hüdrobioloogia, mere-bioloogia, veeökoloogia, limnoloogia ; TÄPSUSTUS: Protsessuuringud
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B260 Hüdrobioloogia, mere-bioloogia, veeökoloogia, limnoloogia ; TÄPSUSTUS: Invasiooniökoloogia
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B260 Hüdrobioloogia, mere-bioloogia, veeökoloogia, limnoloogia ; TÄPSUSTUS: Kliimamuutused

Jooksvad projektid

Lõppenud projektid

Juhendamisel väitekirjad

Juhendatud väitekirjad

Juhendatud järeldoktorid

  • 01.02.2017−01.01.2019 Kiran Liversage "Otsides võõrliikide massrännetest tingitud režiiminihete põhjuseid ja võimalikke lahendusi Läänemere keskkonnas" Tartu Ülikool

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2021
Heckwolf, M.J.; Peterson, A.; Jänes, H.; Horne, P.; Künne, J.; Liversage, K.; Sajeva, M.; Reusch, T.B.H.; Kotta, J. (2021). From ecosystems to socio-economic benefits: a systematic review of coastal ecosystem services in the Baltic Sea. The Science of The Total Environment, 755. DOI: 10.1016/j.scitotenv.2020.142565 [ilmumas].
1.1.
2021
Kotta, J.; Fetissov, M.; Szava-Kovats, R.; Aps, R.; Martin, G. (2021). Online tool to integrate evidence-based knowledge into cumulative effects assessments: Linking human pressures to multiple nature assets. Environmental Advances, xx−xx [ilmumas].
1.1.
2021
Rotter, A.; Barbier, M.; Bertoni, F.; Bones, A.M.; Cancela, M.L.; Carlsson, J.; Carvalho, M.F.; Cegłowska, M.; Chirivella-Martorell, J.; Conk Dalay, M.; Cueto, M.; Dailianis, T.; Deniz, I.; Díaz-Marrero, A.R.; Drakulovic, D.; Dubnika, A.; Edwards, C.; Einarsson, H.; Erdogan, A.; Eroldogan, O.T. ... Vasquez, M.I. (2021). The marine environment, a treasure trove for biotechnology. Frontiers in Marine Science, xx−xx [ilmumas].
1.1.
2021
Kovalenko, K.E.; Pelicice, F.M.; Kats, L.B.; Kotta, J.; Thomaz, S.M. (2021). Aquatic invasive species: Introduction to the Special Issue and dynamics of public interest. Hydrobiologia, xx−xx [ilmumas].
1.1.
2021
Depellegrin, D.; Hansen, H.S.; Schrøder, L.; Bergström, L.; Romagnoni, G.; Steenbeek, J.; Gonçalves, M.; Carneiro, G.; Hammar, L.; Pålsson, J.; Schmidtbauer Crona, J.; Hume, D.; Kotta, J.; Fetissov, M.; Miloš, A.; Kaitairanta, J.; Menegon, S. (2021). Current status, advancements and development needs of geospatial decision support tools for marine spatial planning in European Seas. Ocean & Coastal Management, xx−xx [ilmumas].
1.1.
2021
Kotta, J.; Torn, K.; Paalme, T.; Rätsep, M.; Kaljurand, K.; Teeveer, M.; Kotta, I. (2021). Scale-specific patterns of the production of the charophyte Chara aspera in the brackish Baltic Sea: linking individual and community production and biomass growth. Frontiers in Marine Science, xx−xx [ilmumas].
1.1.
2021
Kreitsberg, R.; Raudna-Kristoffersen, M.; Heinlaan, M.; Ward, R.; Visnapuu, M.; Kisand, V.; Meitern, R.; Kotta, J.; Tuvikene, A. (2021). Seagrass beds reveal high abundance of microplastic in sediments: a case study in the Baltic Sea. Marine Pollution Bulletin, 168, xx−xx. DOI: 10.1016/j.marpolbul.2021.112417.
1.1.
2021
Ojaveer, H.; Kotta, J.; Outinen, O.; Einberg, H.; Zaiko, A.; Lehtiniemi, M. (2021). Meta-analysis on the ecological impacts of widely spread non-indigenous species in the Baltic Sea. The Science of The Total Environment, xx−xx [ilmumas].
1.1.
2021
Liversage, K.; Kotta, J.; Kuprijanov, I.; Rätsep, M.; Nõomaa, K. (2021). A trophic cascade facilitates native habitat providers within assemblages of multiple invasive marine species. Ecosphere, xx−xx [ilmumas].
1.1.
2021
Valdivia, N.; López, D.N.; Fica, E.; Catalán, A.M.; Aguilera, M.A.; Araya, M.;, Betancourtt, C.; Burgos-Andrade, K.; Carvajal-Baldeon, T.; Escares, V.; Gartenstein, S.; Grossmann, M.; Gutiérrez, B.; Kotta, J.; Morales-Torres, D.F.; Riedemann-Saldivia, B.; Rodríguez, S.M.; Velasco-Charpentier, C.; Villalobos, V.I.; Broitman, B.R. (2021). Stability of rocky intertidal communities in response to species removal varies across spatial scales. Oikos, xx−xx [ilmumas].
1.1.
2021
Galparsoro, I.; Pınarbaşı, K.; Gissi, E.; Culhane, F.; Gacutan, J.; Kotta, J.; Cabana, D.; Wanke, S.; Aps, R.; Bazzucchi, D.; Cozzolino, G.; Custodio, M.; Fetissov, M.; Inácio, M.; Jernberg, S.; Piazzi, A.; Paudel, K.P.; Ziemba, A.; Depellegrin, D. (2021). Operationalisation of ecosystem services in support of ecosystem-based marine spatial planning: insights into needs and recommendations. Marine Policy, xx−xx [ilmumas].
1.1.
2021
Fetissov, Mihhail; Aps, Robert; Goerlandt, Floris; Jänes, Holger; Kotta, Jonne; Kujala, Pentti; Szava-Kovats, Robert (2021). Next-Generation Smart Response Web (NG-SRW): An Operational Spatial Decision Support System for Maritime Oil Spill Emergency Response in the Gulf of Finland (Baltic Sea). Sustainability, 13 (12), 1−11. DOI: 10.3390/su13126585.
1.1.
2021
Vahtmäe, E.; Kotta, J.; Lõugas, L.; Kutser, T. (2021). Mapping spatial distribution, percent cover and biomass of benthic vegetation in optically complex coastal waters using hyperspectral CASI and multispectral Sentinel-2 sensors. International Journal of Applied Earth Observation and Geoinformation. DOI: 10.1016/j.jag.2021.102444 [ilmumas].
1.1.
2021
Rudovica, V.; Rotter, A.; Gaudêncio, S. P.; Novoveská, L.; Akgül, F.; Akslen-Hoel, L. K.; Alexandrino, D. A. M.; Anne, O.; Arbidans, L.; Atanassova, M.; Bełdowska, M.; Bełdowski, J.; Bhatnagar, A.; Bikovens, O.; Bisters, V.; Carvalho, M. F.; Catalá, T. S.; Dubnika, A.; Erdoğan, A.; Ferrans, L. ... Burlakovs, J. (2021). Valorization of marine waste: exploitation of industrial by-products and beach wrack towards the production of high added-value products. Frontiers in Marine Science, xx−xx. DOI: 10.3389/fmars.2021.723333 [ilmumas].
1.1.
2021
Fraschetti, S.; McOwen, C.; Papa, L.; Papadopoulou, N.; Bilan, M.; Boström, C.; Capdevila, P.; Carreiro-Silva, M.; Carugati, L.; Cebrian, E.; Coll, M.; Dailianis, T.; Roberto, D.; De Leo, F.; Fiorentino, D.; Gagnon, K.; Gambi, C.; Garrabou, J.; Gerovasileiou, V.; Hereu, B. ... Guarnieri, G. (2021). Where is more important than how in coastal and marine ecosystems restoration. Frontiers in Marine Science, xx−xx [ilmumas].
1.1.
2020
Pajusalu, L.; Albert, G.; Fachon, E.; Hepburn, D.C.; Kotta, J.; Liversage, K.; Paalme, T.; Peterson, A.; Pritchard, W.D.; Põllumäe, A.; Torn, K.; Martin, G. (2020). Ocean acidification may threaten a unique seaweed community and associated industry in the Baltic Sea. Journal of Applied Phycology, 32 (4), 2469−2478. DOI: 10.1007/s10811-019-01935-1.
1.1.
2020
Liversage, Kiran; Kotta, Jonne; Fraser, Clarissa M. K.; Figueira, Will F.; Coleman, Ross A. (2020). The overlooked role of taphonomy in ecology: post-mortem processes can outweigh recruitment effects on community functions. Oikos, 129 (3), 420−432. DOI: 10.1111/oik.06780.
1.1.
2020
Kotta, J.; Futter, M.; Kaasik, A.; Liversage, K.; Rätsep, M.; Barboza, F.R.; Bergström, L.; Bergström, P.; Bobsien, I.; Díaz, E.; Herkül, K.; Jonsson, P.R.; Korpinen, S.; Kraufvelin, P.; Krost, P.; Lindahl, O.; Lindegarth, M.; Lyngsgaard, M.M.; Mühl, M.; Sandman, A.N. ... Virtanen, E. (2020). Cleaning up seas using blue growth initiatives: mussel farming for eutrophication control in the Baltic Sea. The Science of The Total Environment, 709. DOI: 10.1016/j.scitotenv.2019.136144.
1.1.
2020
Bekkby, T.; Papadopoulou, N.; Fiorentino, D.; McOwen, C.J.; Rinde, E.; Boström, C.; Carreiro-Silva, M.; Linares, C.; Andersen, G.S.; Bengil, E.G.T.; Bilan, M.; Cebrian, E.; Cerrano, C.; Fagerli, C.W.; Fraschetti, S.; Gagnon, K.; Gambi, C.; Gundersen, H.; Kipson, S.; Kotta, J. ... Smith, C.J. (2020). Habitat features and their influence on the restoration potential of marine habitats in Europe. Frontiers in Marine Science, xx−xx.
1.1.
2020
Rotter, A.; Bacu, A.; Barbier, M.; Bertoni, F.; Bones, A.M.; Leonor Cancela, M.; Carlsson, J.; Carvalho, M.F.; Cegłowska, M.; Dalay, M.C.; Dailianis, T.; Deniz, I.; Drakulovic, D.; Dubnika, A.; Einarsson, H.; Erdoğan, A.; Eroldoğan, O.T.; Ezra, D.; Fazi, S.; FitzGerald, R.J. ... Vasquez, M.I. (2020). A new network for the advancement of marine biotechnology in Europe and beyond. Frontiers in Marine Science, xx−xx.
1.1.
2020
Toming, Kaire; Kotta, Jonne; Uuemaa, Evelyn; Sobek, Sebastian; Kutser, Tiit; Tranvik, Lars J. (2020). Predicting lake dissolved organic carbon at a global scale. Scientific Reports, xx−xx.
1.1.
2020
Wenne, R.; Zbawicka, M.; Bach, L.; Strelkov, P.; Gantsevich, M.; Kukliński, P.; Kijewski, T.; McDonald, J.H.; Sundsaasen, K.K.; Árnyasi, M.; Lien, S.; Kaasik, A.; Herkül, K.; Kotta, J. (2020). Trans-Atlantic distribution and introgression as inferred from single nucleotide polymorphism: mussels Mytilus and environmental factors. Genes, 11 (5), xx−xx. DOI: 10.3390/genes11050530.
1.1.
2020
Liversage, K.; Kotta, J.; Pajusalu, L. (2020). Effectiveness of common benthic macrofaunal sampling methodology in boulder and cobble reefs. Journal of Experimental Marine Biology and Ecology, 530−531. DOI: 10.1016/j.jembe.2020.151413.
1.1.
2020
Lõugas, Laura; Kutser, Tiit; Kotta, Jonne; Vahtmäe, Ele (2020). Detecting Long Time Changes in Benthic Macroalgal Cover Using Landsat Image Archive. Remote Sensing, 12 (11). DOI: 10.3390/rs12111901.
1.1.
2020
Skov, H.; Rasmussen, E.K.; Kotta, J.; Middelboe, A.L.; Uhrenholdt, T.; Žydelis, R. (2020). Food web responses to eutrophication control in a coastal area of the Baltic Sea. Ecological Modelling, xx−xx. DOI: 10.1016/j.ecolmodel.2020.109249.
1.1.
2020
Sajeva, M.; Maidell, M.; Kotta, J.; Peterson, A. (2020). An Eco-GAME meta-evaluation of existing methods for the appreciation of ecosystem services. Sustainability, xx−xx.
1.1.
2020
Sajeva, M.; Maidell, M.; Kotta, J. (2020). A participatory geo-spatial toolkit for science integration and knowledge transfer informing SDGs based governance and decision making. Sustainability, 12 (19), xx−xx. DOI: 10.3390/su12198088.
6.8.
2020
Kotta, J.; Futter, M.; Kaasik, A.; Liversage, K.; Rätsep, M.; Barboza, F.R.; Bergström, L.; Bergström, P.; Bobsien, I.; Díaz, E.; Herkül, K.; Jonsson, P.R.; Korpinen, S.; Kraufvelin, P.; Krost, P.; Lindahl, O.; Lindegarth, M.; Lyngsgaard, M.M.; Mühl, M.; Sandman, A.N. ... Virtanen, E. (2020). Response to a letter to editor regarding Kotta et al. 2020: Cleaning up seas using blue growth initiatives: Mussel farming for eutrophication control in the Baltic Sea. The Science of The Total Environment, xx−xx.
1.1.
2019
Kijewski, T.; Zbawicka, M.; Strand, J.; Kautsky, H.; Kotta, J.; Rätsep, M.; Wenne, R. (2019). Random forest assessment of correlation between environmental factors and genetic differentiation of marine populations: a case of the mussels Mytilus. Oceanologia, 61 (1), 131−142. DOI: 10.1016/j.oceano.2018.08.002.
1.1.
2019
Minchin, D.; Arbačiauskas, K.; Daunys, D.; Ezhova, E.; Grudule, N.; Kotta, J.; Molchanova, N.; Olenin, S.; Višinskienė, G.; Strake, S. (2019). Rapid expansion and facilitating factors of the Ponto-Caspian invader Dikerogammarus villosus within the eastern Baltic Sea. Aquatic Invasions, xx−xx. DOI: 10.3391/ai.2019.14.2.02.
1.1.
2019
Liversage, Kiran; Kotta, Jonne (2019). A rare example of non-native chitons: broad intertidal habitat range and large densities of Sypharochiton pelliserpentis show no evidence of habitat engineering effect in South Australia. Aquatic Invasions, 14 (2), 267−279. DOI: 10.3391/ai.2019.14.2.07.
1.1.
2019
Kotta, Jonne; Vanhatalo, Jarno; Janes, Holger; Orav-Kotta, Helen; Rugiu, Luca; Jormalainen, Veijo; Bobsien, Ivo; Viitasalo, Markku; Virtanen, Elina; Sandman, Antonia Nystrom; Isaeus, Martin; Leidenberger, Sonja; Jonsson, Per R.; Johannesson, Kerstin (2019). Integrating experimental and distribution data to predict future species patterns. Scientific Reports, 9, ARTN 1821. DOI: 10.1038/s41598-018-38416-3.
1.1.
2019
Gerovasileiou, V.; Smith, C.J.; Sevastou, K.; Papadopoulou, N.; Dailianis, T.; Bekkby, T.; Fiorentino, D.; McOwen, C.J.; Amaro, T.; Bengil, E.G.T.; Bilan, M.; Boström, C.; Carreiro-Silva, M.; Cebrian, E.; Cerrano, C.; Danovaro, R.; Fraschetti, S.; Gagnon, K.; Gambi, C.; Grehan, A. ... Scrimgeour, R. (2019). Habitat mapping in the European Seas - is it fit for purpose in the marine restoration agenda? Marine Policy, 106, 103521. DOI: 10.1016/j.marpol.2019.103521.
1.1.
2019
Liversage, K.; Kotta, J.; Aps, R.; Fetissov, M.; Nurkse, K.; Orav-Kotta, H.; Rätsep, M.; Forsström, T.; Fowler, A.; Lehtiniemi, M.; Normant-Saremba, M.; Puntila-Dodd, R.; Arula, T.; Hubel, K.; Ojaveer, H. (2019). Knowledge to decision in dynamic seas: Methods to incorporate non-indigenous species into cumulative impact assessments for Maritime Spatial Planning. The Science of The Total Environment, 658, 1452−1464. DOI: 10.1016/j.scitotenv.2018.12.123.
1.1.
2019
Barboza, Francisco R.; Kotta, Jonne; Weinberger, Florian; Jormalainen, Veijo; Kraufvelin, Patrik; Molis, Markus; Schubert, Hendrik; Pavia, Henrik; Nylund, Göran M.; Kautsky, Lena; Schagerström, Ellen; Rickert, Esther; Saha, Mahasweta; Fredriksen, Stein; Martin, Georg; Torn, Kaire; Ruuskanen, Ari; Wahl, Martin (2019). Geographic variation in fitness‐related traits of the bladderwrack Fucus vesiculosus along the Baltic Sea‐North Sea salinity gradient. Ecology and Evolution, 1−14. DOI: 10.1002/ece3.5470.
1.1.
2019
Renaud, Paul E.; Wallhead, Phil; Kotta, Jonne; Wtodarska-Kowalczuk, Maria; Bellerby, Richard G. J.; Rätsep, Merli; Slagstad, Dag; Kuklinski, Piotr (2019). Arctic Sensitivity? Suitable Habitat for Benthic Taxa Is Surprisingly Robust to Climate Change. Frontiers in Marine Science, 6, UNSP 538. DOI: 10.3389/fmars.2019.00538.
1.1.
2019
Holmes, M.; Persson, A.; Sahlin, U.; Kotta, J. (2019). Marine protected areas modulate habitat suitability of the invasive round goby (Neogobius melanostomus) in the Baltic Sea. Estuarine Coastal and Shelf Science, 229, 106380. DOI: 10.1016/j.ecss.2019.106380.
2.5.
2019
Pajusalu, L; Bakran-Petricioli, T; Boström, C; Carugati, L; Christie, H; Da Ros, Z; Danovaro, R; Gagnon, K; Gambi, C; Govers, L; Gräfnings, M; Kaljurand, K; Kipson, S; Kotta, J; Martire, M.L; Rinde, E; van der Heide, T; van de Koppel, J; Martin, G. (2019). Restoration results in the case study sites. In: Merces project D2.2 report (1−53).
2.5.
2019
Nõmmela, Kaidi; Kotta, Jonne; Piirimäe, Kristjan (2019). Merekeskkonna ressursside kasutamisest saadava majandusliku kasu mudeli täiendamine ökosüsteemiteenustega.
1.1.
2018
Lokko, K.; Kotta, J.; Orav-Kotta, H.; Nurkse, K.; Pärnoja, M. (2018). Introduction of a functionally novel consumer to a low diversity system: effects of the mud crab Rhithropanopeus harrisii on meiobenthos. Estuarine Coastal and Shelf Science, x−x. DOI: 10.1016/j.ecss.2015.11.017.
1.1.
2018
Vahtmäe, E.; Kotta, J.; Orav-Kotta, H.; Kotta, I.; Pärnoja, M.; Kutser, T. (2018). Predicting macroalgal pigments (chlorophyll a, chlorophyll b, chlorophyll a+b, carotenoids) in various environmental conditions using high resolution hyperspectral spectroradiometers. International Journal of Remote Sensing, 39 (17), xx−xx. DOI: 10.1080/01431161.2017.1399481.
1.1.
2018
Nurkse, K.; Kotta, J.; Rätsep, M.; Kotta, I.; Kreitsberg, R. (2018). Experimental evaluation of the effects of the novel predators, round goby and mud crab on benthic invertebrates in the Gulf of Riga, the Baltic Sea. Journal of the Marine Biological Association of the United Kingdom, 98 (1), 25−31. DOI: 10.1017/S0025315417001965.
1.1.
2018
Guy-Haim, T.; Lyons, D. A.; Kotta, J.; Ojaveer, H.; Queirós, A. M.; Chatzinikolaou, E.; Arvanitidis, C.; Como, S.; Magni, P.; Blight, A. J.; Orav-Kotta, H.; Somerfield, P.J.; Crowe, T. P.; Rilov, G. (2018). Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions – a global review and meta-analysis. Global Change Biology, 24 (3), 906−924. DOI: 10.1111/gcb.14007.
1.1.
2018
Kotta, J.; Wernberg, T.; Jänes, H.; Kotta, I.; Nurkse, K.; Pärnoja, M.; Orav-Kotta, H. (2018). Novel crab predator causes marine ecosystem regime shift. Scientific Reports, 8, xx−xx. DOI: 10.1038/s41598-018-23282-w.
1.1.
2018
Aps, Robert; Herkül, Kristjan; Kotta, Jonne; Cormier, Roland; Kostamo, Kirsi; Laamanen, Leena; Lappalainen, Juho; Lokko, Külli; Peterson, Anneliis; Varjopuro, Riku (2018). Marine environmental vulnerability and cumulative risk profiles to support ecosystem-based adaptive maritime spatial planning. ICES Journal of Marine Science, 75 (7), 2488−2500. DOI: 10.1093/icesjms/fsy101.
1.1.
2018
Kotta, J.; Valdivia, N.; Kutser, T.; Toming, K.; Rätsep, M.; Orav-Kotta, H. (2018). Predicting the cover and richness of intertidal macroalgae in remote areas: a case study in the Antarctic Peninsula. Ecology and Evolution, 8 (17), 9086−9094. DOI: 10.1002/ece3.4463.
1.1.
2018
Liversage, K.; Kotta, J. (2018). Unveiling commonalities in understudied habitats of boulder-reefs: life-history traits of the widespread invertebrate and algal inhabitants. Marine Biology Research, 14 (7), 655−671. DOI: 10.1080/17451000.2018.1510180.
1.1.
2018
Dailianis, T.; Smith, C.J.; Papadopoulou, N.; Gerovasileiou, V.; Sevastou, K.; Bekkby, T.; Bilan, M.; Billett, D.; Boström, C.; Danovaro, R.; Fraschetti, S.; Gagnon, K.; Gambi, C.; Grehan, A.; Kipson, S.; Kotta, J.; McOwen, C.J.; Morato, T.; Ojaveer, H.; Pham, C.K. ... Scrimgeour, R. (2018). Human activities and resultant pressures on key European marine habitats: an analysis of mapped resources. Marine Policy, 98, 1−10. DOI: 10.1016/j.marpol.2018.08.038.
1.1.
2018
Bick, Andreas; Bastrop, Ralf; Kotta, Jonne; Meissner, Karin; Meyer, Maria; Syomin, Vitaly (2018). Description of a new species of Sabellidae (Polychaeta, Annelida) from fresh and brackish waters in Europe, with some remarks on the branchial crown of Laonome. Zootaxa, 4483 (2), 349−364. DOI: 10.11646/zootaxa.4483.2.7.
1.1.
2018
Kotta, J.; Herkül, K.; Jaagus, J.; Kaasik, A.; Raudsepp, U.; Alari, V.; Arula, T.; Haberman, J.; Järvet, A.; Kangur, K.; Kont, A.; Kull, A.; Laanemets, J.; Maljutenko, I.; Männik, A.; Nõges, P.; Nõges, T.; Ojaveer, H.; Peterson, A.; Reihan, A. ... Tõnisson, H. (2018). Linking atmospheric, terrestrial and aquatic environments in high latitude: Regime shifts in the Estonian regional climate system for the past 50 years. PLoS ONE, 13 (12), ARTN e0209568−20. DOI: 10.1371/journal.pone.0209568.
1.1.
2018
Jonsson, Per R.; Kotta, Jonne; Andersson, Helen C.; Herkul, Kristjan; Virtanen, Elina; Sandman, Antonia Nystrom; Johannesson, Kerstin (2018). High climate velocity and population fragmentation may constrain climate-driven range shift of the key habitat former Fucus vesiculosus. Diversity and Distributions, 24 (7), 892−905. DOI: 10.1111/ddi.12733.
1.1.
2017
Lokko, K.; Virro, T.; Kotta, J. (2017). Seasonal variability in the structure and functional diversity of psammic rotifer communities: role of environmental parameters. Hydrobiologia, 796 (1), 287−307. DOI: 10.1007/s10750-016-2923-3.
1.1.
2017
Kotta, J.; Orav-Kotta, H.; Jänes, H.; Hummel, H.; Arvanitidis, C.; van Avesaath, P.; Bachelet, G.; Benedetti-Cecchi, L.; Bojanic, N.; Como, S.; Coppa, S.; Coughlan, J.; Crowe, T.; Dal Bello, M.; Degraer, S.; Juanes de la Pena, J. A.; Fernandes de Matos, V. K.; Espinosa, F.; Faulwetter, S.; Frost, M. ... Weslawski, J. M. (2017). Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 525−538. DOI: 10.1017/S0025315416001351.
1.1.
2017
Jänes, H.; Kotta, J.; Pärnoja, M.; Crowe, T.; Rindi, F.; Orav-Kotta, H. (2017). Functional traits of marine macrophytes predict primary production. Functional Ecology, 31 (4), 975−986. DOI: 10.1111/1365-2435.12798.
1.1.
2017
Dal Bello, M.; Leclerc, J.-C.; Benedetti-Cecchi, L.; Arvanitidis, C.; van Avesaath, P.; Bachelet, G.; Bojanic, N.; Como, S.; Coppa, S.; Coughlan, J.; Crowe, T.; Degraer, S.; Espinosa, F.; Faulwetter, S.; Frost, M.; Guinda, X.; Jankowska, E.; Jourde, J.; Kerckhof, F.; Kotta, J. ... Hummel, H. (2017). Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 539−547. DOI: 10.1017/S0025315416001491.
1.1.
2017
Oganjan, K.; Lauringson, V.; Kotta, J.; Rostin, L.; Martin, G. (2017). Factors affecting the recruitment of Amphibalanus improvisus and Dreissena polymorpha in a highly eutrophic brackish bay. Estuarine Coastal and Shelf Science, 184, 37−45. DOI: 10.1016/j.ecss.2016.10.042.
1.1.
2017
Griffiths, J.R.; Kadin, M.; Nascimento, F.J.A.; Tamelander, T.; Törnroos, A.; Bonaglia, S.; Bonsdorff, E.; Brüchert, V.; Gårdmark, A.; Järnström, M.; Kotta, J.; Lindegren, M.; Nordström, M.C.; Norkko, A.; Olsson, J.; Weigel, B.; Žydelis, R.; Blenckner, T.; Niiranen, S.; Winder, M. (2017). The importance of benthic-pelagic coupling for marine ecosystem functioning in a changing world. GCB Bioenergy, 23 (6), 2179−2196. DOI: 10.1111/gcb.13642.
1.1.
2017
Dias, P. Joana; Fotedar, Seema; Munoz, Julieta; Hewitt, Matthew J.; Lukehurst, Sherralee; Hourston, Mathew; Wellington, Claire; Duggan, Roger; Bridgwood, Samantha; Massam, Marion; Aitken, Victoria; de Lestang, Paul; McKirdy, Simon; Willan, Richard; Kirkendale, Lisa; Giannetta, Jennifer; Corsini-Foka, Maria; Pothoven, Steve; Gower, Fiona; Viard, Frédérique ... Snow, Michael (2017). Establishment of a taxonomic and molecular reference collection to support the identification of species regulated by the Western Australian Prevention List for Introduced Marine Pests. Management of Biological Invasions, 8 (2), 215−225. DOI: 10.3391/mbi.2017.8.2.09.
1.1.
2017
Puente, A.; Guinda, X.; Juanes, J.A.; Ramos, E.; Echavarri-Erasun, B.; de la Hoz, C.F.; Degraer, S.; Kerckhof, F.; Bojanic, N.; Rousou, M.; Orav-Kotta, H.; Kotta, J.; Jourde, J.; Pedrotti, M.L.; Leclerc, J.-C.; Simon, N.; Bachelet, G.; Lavesque, N.; Arvanitidis, C.; Pavloudi, C. ... van Avesaath, P. (2017). The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 549−560. DOI: 10.1017/S0025315416001673.
1.1.
2017
Jänes, Holger; Herkül, Kristjan; Kotta, Jonne (2017). Environmental niche separation between native and non-native benthic invertebrate species: Case study of the northern Baltic Sea. Marine Environmental Research, 131, 123−133. DOI: 10.1016/j.marenvres.2017.08.001.
1.1.
2017
Leppänen, J.J.; Kotta, J.; Daneliya, M.; Salo, E. (2017). First record of Chelicorophium curvispinum (G.O. Sars, 1895) from Lake Mälaren, SE Sweden. BioInvasions Records, 6 (4), 345−349. DOI: 10.3391/bir.2017.6.4.07.
1.1.
2017
Möller, T.; Kotta, J. (2017). Rangia cuneata (G. B. Sowerby I, 1831) continues its invasion in the Baltic Sea: the first record in Pärnu Bay, Estonia. BioInvasions Records, 6 (2), 167−172. DOI: 10.3391/bir.2017.6.2.13.
1.1.
2017
Kuprijanov, Ivan; Herkül, Kristjan; Kotta, Jonne (2017). Ecological niche differentiation between native and non-native shrimps in the northern Baltic Sea. Aquatic Ecology, 51 (3), 389−404. DOI: 10.1007/s10452-017-9624-5.
1.1.
2017
Liversage, Kiran; Nurke, Kristiina; Kotta, Jonne; Järv, Leili (2017). Environmental heterogeneity associated with European perch (Perca fluviatilis) predation on invasive round goby (Neogobius melanostomus). Marine Environmental Research, 132, 132−139. DOI: 10.1016/j.marenvres.2017.10.017.
3.1.
2017
Radziejewska, T.; Kotta, J.; Kotwicki, L. (2017). Sandy coasts. In: Biological Oceanography of the Baltic Sea (457−482). Springer. DOI: 10.1007/978-94-007-0668-2_12.
3.1.
2017
Hummel, H.; van Avesaath, P.; Wijnhoven, S.; Kleine-Schaars, L.; Degraer, S.; Kerckhof, F.; Bojanic, N.; Skejic, S.; Vidjak, O.; Rousou, M.; Orav-Kotta, H.; Kotta, J.; Jourde, J.; Pedrotti, M. L.; Leclerc, J-C.; Simon, N.; Rigaut-Jalabert, F.; Bachelet, G.; Lavesque, N.; Arvanitidis, C. ... Rilov, G. (2017). Geographic patterns of biodiversity in European coastal marine benthos. Journal of the Marine Biological Association of the United Kingdom, 97 (3), 507−523. DOI: 10.1017/S0025315416001119.
1.1.
2016
Gogina, M.; Zettler, M.L.; Nygård, H.; Blomqvist, M.; Daunys, D.; Josefson, A.B.; Kotta, J.; Maximov, A.; Warzocha, J.; Yermakov, V.; Gräwe, U. (2016). The Baltic Sea scale inventory of benthic faunal communities. ICES Journal of Marine Science, xx−xx.
1.1.
2016
Kotta, J.; Nurkse, K.; Puntila, R.; Ojaveer, H. (2016). Shipping and natural environmental conditions determine the distribution of the invasive non-indigenous round goby Neogobius melanostomus in a regional sea. Estuarine Coastal and Shelf Science, 169, 15−24.
1.1.
2016
Schiele, K.; Darr, A.; Zettler, M. L.; Berg, T.; Blomqvist, M.; Daunys, D.; Jermakovs, V.; Korpinen, S.; Kotta, J.; Nygård, H.; von Weber, M.; Voss, J.; Warzocha, J. (2016). Rating species sensitivity throughout gradient systems - a consistent approach for the Baltic Sea. Ecological Indicators, 61 (2), 447−455.
1.1.
2016
Herkül, Kristjan; Lauringson, Velda; Kotta, Jonne (2016). Specialization among amphipods: the invasive Gammarus tigrinus has narrower niche space compared to native gammarids. Ecosphere, 7 (6), 1−16. DOI: 10.1002/ecs2.1306.
1.1.
2016
Reisalu, G.; Kotta, J.; Herkül, K.; Kotta, I. (2016). The invasive amphipod Gammarus tigrinus Sexton, 1939 displaces native gammarid amphipods from sheltered macrophyte habitats of the Gulf of Riga. Aquatic Invasions, 11 (1), 45−54. DOI: 10.3391/ai.2016.11.1.05.
1.1.
2016
Lyons, D.; Arvanitidis, C.; Blight, A.; Chatzinikolaou, E.; Guy-Haim, T.; Kotta, J.; Queirós, A.; Rilov, G.; Somerfield, P.; Crowe, T. (2016). There are no whole truths in meta-analyses: all their truths are half truths. Global Change Biology, 22, 968−971. DOI: 10.1111/gcb.12989.
1.1.
2016
Lauringson, V.; Kotta J. (2016). Mussels of a marginal population affect the patterns of ambient macrofauna: A case study from the Baltic Sea. Marine Environmental Research, 116, 10−17. DOI: 10.1016/j.marenvres.2016.02.010.
1.1.
2016
Holopainen, R.; Lehtiniemi, M.; Meier, M.H.E.; Albertsson, J.; Gorokhova, E.; Kotta, J.; Viitasalo, M. (2016). Impacts of changing climate on the non-indigenous invertebrates in the northern Baltic Sea by end of the twenty-first century. Biological Invasions, xx−xx. DOI: 10.1007/s10530-016-1197-z.
1.1.
2016
Nurkse, K.; Kotta, J.; Orav-Kotta, H.; Ojaveer, H. (2016). A successful non-native predator, round goby, in the Baltic Sea: generalist feeding strategy, diverse diet and high prey consumption. Hydrobiologia, x−x. DOI: 10.1007/s10750-016-2795-6.
1.1.
2016
Lennuk, L.; Kotta, J.; Taits, K.; Lauringson, V.; Jänes, H. (2016). Which environmental scales and factors matter for mesozooplankton communities in a shallow brackish water ecosystem? Journal of Plankton Research, 38 (1), 139−153. DOI: 10.1093/plankt/fbv111.
3.2.
2016
Kotta, Jonne; Korpinen, Samuli; Orlova, Marina; Pärnoja, Merli (2016). Deep bottoms. Shallow and littoral zones. In: Raateoja, M. & Setälä, O. (eds.). The Gulf of Finland assessment. Reports of the Finnish Environmental Institute, 27, 208−2011.
3.2.
2016
Lehtiniemi, Maiju; Antsulevich, Alexander; Kotta, Jonne; Maximov, Alexey; Ojaveer, Henn; Orlova, Marina (2016). Non-indigenous species. In: Raateoja, M. & Setälä, O. (eds.). The Gulf of Finland assessment. Reports of the Finnish Environmental Institute, 27, 264−273.
3.4.
2016
Kuprijanov,I; Kotta, J.; Herkül, K. (2016). Ecological niche differentiation between native and alien caridean shrimps in the northern Baltic Sea. 51-st European Marine Biology Symposium, Rhodes, 29.09.2016. University of Athens, 75.
1.1.
2015
Jänes, H.; Kotta, J.; Herkül, K. (2015). High fecundity and predation pressure of the invasive Gammarus tigrinus cause decline of indigenous gammarids. Estuarine Coastal and Shelf Science, 165, 185−189. DOI: 10.1016/j.ecss.2015.05.014.
1.1.
2015
Kotta, J.; Oganjan, K.; Lauringson, V.; Pärnoja, M.; Kaasik, A.; Rohtla, L.; Kotta, I.; Orav-Kotta, H. (2015). Establishing functional relationships between abiotic environment, macrophyte coverage, resource gradients and the distribution of Mytilus trossulus in a brackish non-tidal environment. PLoS ONE, 10 (8), e0136949. DOI: 10.1371/journal.pone.0136949.
1.1.
2015
Nurkse, K.; Kotta, J.; Orav-Kotta, H.; Pärnoja, M.; Kuprijanov, I. (2015). Laboratory experiment on the habitat occupancy of the crab Rhithropanopeus harrisii (Gould) in an invaded ecosystem: The north-eastern Baltic Sea. Estuarine Coastal and Shelf Science, 154, 152−157. DOI: 10.1016/j.ecss.2014.12.046.
1.1.
2015
Kuprijanov, Ivan; Kotta, Jonne; Lauringson, Velda; Herkül, Kristjan (2015). Trophic interactions between native and alien palaemonid prawns and an alien gammarid in a brackish water ecosystem. Proceedings of the Estonian Academy of Sciences, 64 (4), 518−524. DOI: 10.3176/proc.2015.4.06.
1.1.
2015
Ojaveer, H.; Kotta, J. (2015). Ecosystem impacts of the widespread non-indigenous species in the Baltic Sea: literature survey evidences major limitations in knowledge. Hydrobiologia, 750 (1), 171−185. DOI: 10.1007/s10750-014-2080-5.
1.1.
2015
Kotta, J.; Kotta, I.; Bick, A.; Bastrop, R.; Väinölä, R. (2015). Modelling habitat range and seasonality of a new, non-indigenous, polychaete Laonome sp. (Sabellida, Sabellidae) in Pärnu Bay, the north-eastern Baltic Sea. Aquatic Invasions, 10 (3), 275−285. DOI: 10.3391/ai.2015.10.3.03.
1.1.
2015
Cusson, M.; Crowe, T. P.; Araújo, R.; Arenas, F.; Aspen, R.; Bulleri, F.; Davoult, D.; Dyson, K.; Fraschetti, S.; Herkül, K.; Hubas, C.; Jenkins, S.; Kotta, J.; Kraufvelin, P.; Migné, A.; Molis, M.; Mulholland, O.; Noel, M.-L. J. L.; Paterson, D. M.; Saunders, J. ... Benedetti-Cecchi, L. (2015). Relationships between biodiversity and the stability of marine ecosystems: comparisons at a European scale using meta-analysis. Journal of Sea Research, 68, 5−14. DOI: 10.1016/j.seares.2014.08.004.
1.1.
2015
Lennuk, L.; Kotta, J.; Teeveer, K.; Taits, K. (2015). The short-term effects of crude oil on the survival of different size-classes of cladoceran Daphnia magna (Straus, 1820). Oceanologia, 57 (1), 71−77. DOI: 10.1016/j.oceano.2014.10.003.
1.1.
2015
Maggi, E.; Benedetti-Cecchi, L.; Castelli, A.; Chatzinikolaou, E.; Crowe, T.; Ghedini, G.; Kotta, J.; Lyons, D.; Ravaglioli, C.; Rilov, G.; Rindi, L.; Bulleri, F. (2015). Ecological impacts of invading seaweeds: a meta-analysis of their effects at different trophic levels. Diversity and Distributions, 21 (1), 1−12. DOI: 10.1111/ddi.12264.
1.1.
2015
Liversage, Kiran; Kotta, Jonne (2015). Disturbance-related patterns on unstable rocky benthos of the eastern Baltic coast. Proceedings of the Estonian Academy of Sciences, 64, 53−61. DOI: 10.3176/proc.2015.1.07.
2.5.
2015
Raudsepp, Urmas; Jaagus, Jaak; Alari, Victor; Arula, Timo; Järvet, Arvo; Kont, Are; Kotta, Jonne; Kull, Ain; Laanemets, Jaan; Maljutenko, Ilja; Männik, Aarne; Reihan, Alvina; Rõõm, Rein; Sepp, Mait; Suursaar, Ülo; Tamm, Ottar; Tamm, Toomas; Tõnisson, Hannes (2015). Eesti kliima ja keskkonnaseisundi võimalike muutuste hindamine atmosfääri-, mere- ja jõgede äravoolu dünaamiliste mudelite tulemuste põhjal (ESTKLIIMA). Andres Tõnisson (Toim.). Keskkonnakaitse ja -tehnoloogia teadus- ja arendustegevuse programmi teaberaamat 2010-2015 (88−94). Eesti Teadusagentuur.
5.2.
2015
Lokko, Külli; Virro, Taavi; Kotta, Jonne (2015). Role of environmental parameters defining seasonal variability in the dominance structure of psammic rotifer communities. XIV. Rotifera. Book of abstracts: XIV International Rotifer Symposium. České Budějovice, Czech Republic, 30 August – 4 September 2015. Ed. Šorf, M.; Devetter, M. České Budějovice: HERBIA s.r.o, 38−39.
1.1.
2014
Kotta, J.; Remm, K.; Vahtmäe, E.; Kutser, T.; Orav-Kotta, H. (2014). In-air spectral signatures of the Baltic Sea macrophytes and their statistical separability. Journal of Applied Remote Sensing, 8, 083634. DOI: 10.1117/1.JRS.8.083634.
1.1.
2014
Lokko, K.; Virro, T.; Kotta, J. (2014). Taxonomic composition of zoopsammon in the fresh and brackish waters of Estonia, the Baltic province ecoregion of Europe. Estonian Journal of Ecology, 63 (4), 242−261. DOI: 10.3176/eco.2014.4.04.
1.1.
2014
Lokko, K.; Kotta, J.; Virro, T. (2014). Seasonal trends in horizontal and vertical patterns of zoopsammon in the brackish Baltic Sea in relation to key environmental variables. Proceedings of the Biological Society of Washington, 127 (1), 58−77. DOI: 10.2988/0006-324X-127.1.58.
1.1.
2014
Kotta, J.; Torn, K.; Reisalu, G.; Veber, T. (2014). Relationships between mechanical disturbance and biomass of the invasive amphipod Gammarus tigrinus within a charophyte dominated macrophyte community. Marine Ecology, 35, 11−18. DOI: 10.1111/maec.12073.
1.1.
2014
Kotta, J.; Möller, T.; Orav-Kotta, H.; Pärnoja, M. (2014). Realized niche width of a brackish water submerged aquatic vegetation under current environmental conditions and projected influences of climate change. Marine Environmental Research, 102, 88−101. DOI: 10.1016/j.marenvres.2014.05.002.
1.1.
2014
Pärnoja, Merli; Kotta, Jonne; Orav-Kotta, Helen (2014). Effect of short-term elevated nutrients and mesoherbivore grazing on photosynthesis of macroalgal communities. Proceedings of the Estonian Academy of Sciences. Ecology, 63 (1), 93−103. DOI: 10.3176/proc.2014.1.12.
1.1.
2014
Lauringson, Velda; Kotta, Jonne; Orav-Kotta, Helen; Kaljurand, Kaire (2014). Diet of mussels Mytilus trossulus and Dreissena polymorpha in a brackish nontidal environment. Marine Ecology, 35 (1), 56−66. DOI: 10.1111/maec.12120.
1.1.
2014
Pärnoja, M.; Kotta, J.; Orav-Kotta, H.; Paalme, T. (2014). Comparisons of individual and community photosynthetic production indicate light limitation in the shallow water macroalgal communities of the northern Baltic Sea. Marine Ecology, 35, 19−27. DOI: 10.1111/maec.12074.
1.1.
2014
Schagerström, E.; Forslund, H.; Kautsky, L.; Pärnoja, M.; Kotta, J. (2014). Does thalli complexity and biomass affect the associated flora and fauna of two co-occurring Fucus species in the Baltic Sea? Estuarine Coastal and Shelf Science, 149, 187−193. DOI: 10.1016/j.ecss.2014.08.022.
1.1.
2014
Kotta, J.; Möller, T. (2014). Linking nutrient loading, local abiotic variables, richness and biomasses of macrophytes, and associated invertebrate species in the north-eastern Baltic Sea. Estonian Journal of Ecology, 63 (3), 145−167. DOI: 10.3176/eco.2014.3.03.
1.1.
2014
Simm, M.; Kotta, J.; Jänes, H. (2014). Mean weight and total biomass of zooplankton as a core indicator of biodiversity of the MSFD: An example of the Gulf of Riga. Estonian Journal of Ecology, 63 (4), 232−241. DOI: 10.3176/eco.2014.4.03.
1.1.
2014
Lyons, D.A.; Arvanitidis, C.; Blight, A.J.; Chatzinikolaou, E.; Guy-Haim, T.; Kotta, J.; Orav-Kotta, H.; Queirós, A.M.; Rilov, G.; Somerfield, P.J.; Crowe, T.P. (2014). Macroalgal blooms alter community structure and primary productivity in marine ecosystems. Global Change Biology, 20 (9), 2712−2724. DOI: 10.1111/gcb.12644.
1.2.
2014
Möller, T.; Kotta, J.; Martin, G. (2014). Spatiotemporal variability in eelgrass Zostera marina L. in the northeastern Baltic Sea: Canopy structure and associated macrophyte and invertebrate communities. Estonian Journal of Ecology, 63 (2), 90−108. DOI: 10.3176/eco.2014.2.03.
1.2.
2014
Kovtun-Kante, A.; Torn, K.; Kotta, J. (2014). In situ production of charophyte communities under reduced light conditions in a brackish water ecosystem. Estonian Journal of Ecology, 63 (1), 28−38. DOI: 10.3176/eco.2014.1.03.
5.2.
2014
Lokko, Külli; Virro, Taavi; Kotta, Jonne (2014). Seasonal variability in the diversity of psammic testate amoebae in the Estonian fresh and brackish waters. Abstracts & Programme: 7th International Symposium on Testate Amoebae. 8‒12 September 2014, Poznań, Poland. Ed. Marcisz, K. Poznań, 73.
1.1.
2013
Lokko, K.; Virro, T.; Kotta, J. (2013). Testing effects of shore height level, sediment characteristics and vegetation cover on the seasonality of zoopsammon communities in the two boreal lakes differing in their trophic state. Hydrobiologia, 700 (1), 1−8. DOI: 10.1007/s10750-012-1210-1.
1.1.
2013
Zettler, M.L.; Proffitt, C.E.; Darr, A.; Degraer, S.; Devriese, L.; Greathead, C.; Kotta, J.; Magni, P.; Martin, G.; Reiss, H.; Speybroeck, J.; Tagliapietra, D.; Van Hoey, G.; Ysebaert, T. (2013). On the myths of indicator species: issues and further consideration in the use of static concepts for ecological applications. PLoS ONE, 8 (10), e78219. DOI: 10.1371/journal.pone.0078219.
1.1.
2013
Kotta, J.; Pärnoja, M.; Katajisto, T.; Lehtiniemi, M.; Malavin, S.A.; Reisalu, G.; Panov, V.E. (2013). Is a rapid expansion of the invasive amphipod Gammarus tigrinus Sexton, 1939 associated with its niche selection: a case study in the Gulf of Finland, the Baltic Sea. Aquatic Invasions, 8 (3), 319−332. DOI: 10.3391/ai.2013.8.3.08.
1.1.
2013
Kotta, J.; Kutser, T.; Teeveer, K.; Vahtmäe, E.; Pärnoja, M. (2013). Predicting Species Cover of Marine Macrophyte and Invertebrate Species Combining Hyperspectral Remote Sensing, Machine Learning and Regression Techniques. PLoS ONE, 8 (6), e63946. DOI: 10.1371/journal.pone.0063946.
1.1.
2013
Järv, L.; Kotta, J.; Simm, M. (2013). Relationship between biological characteristics of fish and their contamination with trace metals: a case study of perch Perca fluviatilis L. in the Baltic Sea. Proceedings of the Estonian Academy of Sciences, 62 (3), 193−201. DOI: 10.3176/proc.2013.3.05.
1.1.
2013
Crowe, T. P.; Cusson, M.; Bulleri, F.; Davoult, D.; Arenas, F.; Aspden, R.; Benedetti-Cecchi, L.; Bevilacqua, S.; Davidson, I.; Defew, E.; Fraschetti, S.; Golléty, C.; Griffin, J. N.; Herkül, K.; Kotta, J.; Migné, A.; Molis, M.; Nicol, S. K.; Noël, L. M.-L. J.; Sousa Pinto, I. ... Jenkins, S. (2013). Large-scale variation in combined impacts of canopy loss and disturbance on community structure and ecosystem functioning. PLoS ONE, 8 (6), e66238. DOI: 10.1371/journal.pone.0066238.
1.1.
2013
Herkül, K.; Kotta, J.; Kutser, T.; Vahtmäe, E. (2013). Relating remotely sensed optical variability to marine benthic biodiversity. PLoS ONE, 8 (2), e55624. DOI: 10.1371/journal.pone.0055624.
1.1.
2013
Paalme, T.; Kotta, J.; Kersen, P. (2013). Does the growth rate of drifting Furcellaria lumbricalis and Coccotylus truncatus depend on their proportion and density. Proceedings of the Estonian Academy of Sciences, 62 (2), 141−147. DOI: 10.3176/proc.2013.2.08.
1.1.
2013
Wernberg, T.; Thomsen, M. S.; Kotta, J. (2013). Complex plant-herbivore-predator interactions in a brackish water seaweed habitat. Journal of Experimental Marine Biology and Ecology, 449, 51−56. DOI: 10.1016/j.jembe.2013.08.014.
1.2.
2013
Kuprijanov, I; Kotta, J (2013). First evidence on the epiphytic macroalga Pylaiella littoralis on the prawn Palaemon adspersus. Estonian Journal of Ecology, 60, 287−291.
1.2.
2013
Kotta, J. (2013). Water salinity and benthic macrophyte communities are the key variables defining the distribution pattern of benthic faunal assemblages in the shallow water areas of the Gulf of Riga. Estonian Journal of Ecology, 62 (2), 107−120. DOI: 10.3176/eco.2013.2.03.
1.2.
2013
Martin, G.; Kotta, J.; Möller, T.; Herkül, K. (2013). Spatial distribution of marine benthic habitats in the Estonian coastal sea, northeastern Baltic Sea. Estonian Journal of Ecology, 62, 165−191.
1.2.
2013
Katajisto, T.; Kotta, J.; Lehtiniemi, M.; Malavin, S. A.; Panov, V. E. (2013). Palaemon elegans Rathke, 1837 (Caridea: Palaemonoidea: Palaemonidae) established in the Gulf of Finland, the north-eastern Baltic Sea. BioInvasions Records, 2 (2), 125−132.
3.1.
2013
Martin, Georg; Kotta, Jonne; Aps, Robert; Kopti, Madli; Martin, Kai; Remmelgas, Laura; Kuris, Merle (2013). Marine spatial planning as a tool for promoting sustainable economic development including tourism and recreation in a coastal area: an example from Pärnu Bay, NE Baltic Sea. WIT Transactions on Ecology and the Environment, 173, 393−404. DOI: 10.2495/SDP130331.
3.1.
2013
Kotta, J.; Orav-Kotta, H.; Pärnoja, M. (2013). Role of physical water properties and environmental disturbances on the diversity of coastal macrophyte and invertebrate communities in a brackish water ecosystem. In: WIT Transactions on Ecology and the Environment (77−88). WIT Press. DOI: 10.2495/CP130071.
3.5.
2013
Pärnoja, Merli; Kotta, Jonne; Kaljurand, Kaire; Martin, Georg (2013). Scientific diving as a research tool for mapping reefs in the northeastern Baltic Sea. PROCEEDINGS JOINT INTERNATIONAL SCIENTIFIC DIVING SYMPOSIUM AMERICAN ACADEMY OF UNDERWATER SCIENCES and EUROPEAN SCIENTIFIC DIVING PANEL: 2013 AAUS/ESDP International Diving for Science Symposium, Curacao, Netherlands Antilles, October 23-27, 2013.
5.2.
2013
Lokko, Külli; Kotta, Jonne; Virro, Taavi (2013). Seasonal variability, horizontal and vertical distribution of zoopsammon in the Eastern Baltic Sea. In: The Future of Meiofauna Study. 15th International Meiofauna Conference. Abstracts (49, 132). 15th International Meiofauna Conference. Seoul, Korea, 22–26 July 2013. Hanyang University, Ansan, Korea.
5.2.
2013
Kotta, J.; Pärnoja, M.; Orav-Kotta, H.; Kotta, I. (2013). Comparison of photosynthetic production of the brown seaweed Fucus vesiculosus and Fucus radicans in the Baltic Sea. Program & Abstracts: 21th International Seaweed Symposium, 21.04.−26.04.2013, Bali, Indonesia,. x, 90.
1.1.
2012
Lauringson, V.; Kotta, J.; Kersen, P.; Leisk, Ü.; Orav-Kotta, H.; Kotta, I. (2012). Use case of biomass-based benthic invertebrate index for brackish waters in connection to climate and eutrophication. Ecological Indicators, 12, 123−132.
1.1.
2012
Thomsen, M.S.; Wernberg, T.; Engelen, A.H.; Tuya, F.; Vanderklift, M.A.; Holmer, M.; McGlathery, K.J.; Arenas, F.; Kotta, J.; Silliman, B.R. (2012). A meta-analysis of seaweeds impacts on seagrasses: generalities and knowledge gaps. PLoS ONE, 7 (1), 21−28. DOI: 10.1371/journal.pone.0028595.
1.1.
2012
Arula, T.; Kotta, J.; Lankov, A.; Simm, M.; Põlme, S. (2012). Diet composition and feeding activity of larval spring-spawning herring: importance of environmental variability. Journal of Sea Research, 68, 33−40. DOI: 10.1016/j.seares.2011.12.003.
1.1.
2012
Bulleri, F.; Benedetti-Cecchi, L.; Cusson, M.; Maggi, E.; Arenas, F.; Aspden, R.; Bertocci, I.; Crowe, T. P.; Davoult, D.; Eriksson, B. K.; Fraschetti, S.; Gollety, C.; Griffin, J.; Jenkins, S. R.; Kotta, J.; Kraufvelin, P.; Molis, M.; Sousa Pinto, I.; Terlizzi, A.; Valdivia, N. ... Paterson, D. M. (2012). The temporal stability of European rocky shore assemblages: variation across a latitudinal gradient and the role of habitat-formers. Oikos, 121 (11), 1801−1809. DOI: 10.1111/j.1600-0706.2011.19967.x.
1.1.
2012
Vahtmäe, Ele; Kutser, Tiit; Kotta, Jonne; Pärnoja, Merli; Möller, Tiia; Lennuk, Lennart (2012). Mapping Baltic Sea shallow water environments with airborne remote sensing. Oceanology, 52 (6), 803−809. DOI: 10.1134/S0001437012060148.
1.1.
2012
Leiger, R.; Aps, R.; Kotta, J.; Orviku, Ü.K.; Pärnoja, M.; Tõnisson, H. (2012). Relationship between shoreline substrate type and sensitivity of seafloor habitats at risk to oil pollution. Ocean & Coastal Management, 66, 12−18. DOI: 10.1016/j.ocecoaman.2012.05.004.
1.2.
2012
Herkül, Kristjan; Kotta, Jonne (2012). Assessment of the ecological impact of an oil spill on shallow brackish-water benthic communities: a case study in the northeastern Baltic Sea. Estonian Journal of Ecology, 61 (3), 173−189. DOI: 10.3176/eco.2012.3.02.
1.2.
2012
Kotta, J.; Lauringson, V.; Kaasik, A.; Kotta, I. (2012). Defining the coastal water quality in Estonia based on benthic invertebrate communities. Estonian Journal of Ecology, 61 (2), 86−105. DOI: 10.3176/eco.2012.2.02.
1.2.
2012
Kotta, J.; Kuprijanov, I. (2012). The first finding of the palaemonid shrimp Palaemon elegans Rathke, 1837 in the Estonian coastal sea. Estonian Journal of Ecology, 61 (2), 148−153.
1.2.
2012
Rilov, G.; Mant, R.; Lyons, D.; Bulleri, F.; Benedetti-Cecchi, L.; Kotta, J.; Queiros, A.; Chatzinikolaou, E.; Crowe, T.; Guy-Haim, T. (2012). How strong is the effect of invasive ecosystem engineers on the distribution patterns of local species, the local and regional biodiversity and ecosystem functions? A Systematic Review Protocol. Environmental Evidence, 1 (10), 0. DOI: 10.1186/2047-2382-1-10.
1.2.
2012
Bulleri, F.; Mant, R.; Benedetti-Cecchi, L.; Chatzinikolaou, E.; Crowe, T.; Kotta, J.; Lyons, D.; Rilov, G.; Maggi, E. (2012). The effects of exotic seaweeds on native benthic assemblages: variability between trophic levels and influence of background environmental and biological conditions. Environmental Evidence, 1 (8), 0. DOI: 10.1186/2047-2382-1-8.
1.2.
2012
Kotta, Jonne; Ojaveer, Henn (2012). Rapid establishment of the alien crab Rhithropanopeus harrisii (Gould) in the Gulf of Riga. Estonian Journal of Ecology, 61 (4), 293−298. DOI: 10.3176/eco.2012.4.04.
1.2.
2012
Lyons, D.A.; Mant, R.; Bulleri, F.; Kotta, J.; Rilov, G.; Crowe, T. (2012). What are the effects of macroalgal blooms on the structure and functioning of marine ecosystems? A Systematic Review Protocol. Environmental Evidence, xx−xx.
1.1.
2011
Verliin, A.; Kotta, J.; Orav-Kotta, H.; Saks, L.; Vetemaa, M. (2011). Food selection of Coregonus lavaretus (L.) in a brackish water ecosystem. Journal of Fish Biology, 78 (2), 540−551. DOI: 10.1111/j.1095-8649.2010.02870.x.
1.1.
2011
Paalme, T.; Kotta, J.; Kersen, P.; Martin, G.; Kukk, H.; Torn, K. (2011). Inter-annual variations in biomass of loose lying algae Furcellaria-Coccotylus community: the relative importance of local versus regional environmental factors in the West Estonian Archipelago. Aquatic Botany, 95 (2), 146−152.
1.1.
2011
Kovtun, A.; Torn, K.; Martin, G.; Kullas, T.; Kotta, J.; Suursaar, Ü. (2011). Influence of abiotic environmental conditions on spatial distribution of charophytes in the coastal waters of West Estonian Archipelago, Baltic Sea. Journal of Coastal Research, 412−416.
1.1.
2011
Kotta, J.; Orav-Kotta, H.; Herkül, K.; Kotta, I. (2011). Habitat choice of the invasive Gammarus tigrinus and the native Gammarus salinus indicates weak interspecific competition. Boreal Environment Research, 16, 64−72.
1.1.
2011
Ojaveer, H.; Kotta, J.; Põllumäe, A.; Põllupüü, M.; Jaanus, A.; Vetemaa, M. (2011). Alien species in a brackish water temperate ecosystem: annual-scale dynamics in response to environmental variability. Environmental Research, 111 (7), 933−942. DOI: 10.1016/j.envres.2011.03.002.
1.1.
2011
Vahtmäe, E.; Kutser, T.; Kotta, J.; Pärnoja, M. (2011). Detecting patterns and changes in a complex benthic environment of the Baltic Sea. Journal of Applied Remote Sensing, 5, 053559-1−053559-18. DOI: 10.1117/1.3653271.
1.1.
2011
Herkül, K.; Kotta, J.; Pärnoja, M. (2011). Effect of physical disturbance on the soft sediment benthic macrophyte and invertebrate community in the northern Baltic Sea. Boreal Environment Research, 16, 209−219.
1.1.
2011
Järv, L.; Kotta, J.; Kotta, I.; Raid, T. (2011). Linking the structure of benthic invertebrate communities and the diet of native and invasive fish species in a brackish water ecosystem. Annales Zoologici Fennici, 48 (3), 129−141.
1.1.
2011
Kersen, P.; Kotta, J.; Bučas, M.; Kolesova, N.; Deķere, Z. (2011). Epiphytes and associated fauna on the brown alga Fucus vesiculosus in the Baltic and the North Seas in relation to different abiotic and biotic variables. Marine Ecology, 32, 1, 87−95.
1.1.
2011
Conley, D. J.; Carstensen, J.; Aigars, J.; Axe, P.; Bonsdorff, E.; Eremina, T.; Haahti, B.-M.; Humborg, C.; Jonsson, P.; Kotta, J.; Lännegren, C.; Larsson, U.; Maximov, A.; Rodriguez Medina, M.; Lysiak-Pastuszak, E.; Remeikaité-Nikiené, N.; Walve, J.; Wilhelms, S.; Zillén, L. (2011). Hypoxia is increasing in the coastal zone of the Baltic Sea. Environmental Science & Technology, 45 (16), 6777−6783. DOI: 10.1021/es201212r.
1.2.
2011
Kuprijanov, I.; Kotta, J.; Pärnoja, M.; Herkül, K.; Kersen, P. (2011). Scale-specific effects of environmental variables on benthic macrophyte and invertebrate communities in the Vaindloo area, the central Gulf of Finland. Estonian Journal of Ecology, 60, 4−17.
3.2.
2011
Kotta, J.; Ojaveer, H. (2011). Populatsioonid, kooslused ja ökosüsteemid muutuvates loodus- ja inimmõju tingimustes. Soomere, T.; Nõges, T.; Help, H.-L.; Jakobson, S.; Rebo, Ü.; Varlamova, G. (Toim.). TEADUSMÕTE EESTIS (VII) MERI. JÄRVED. RANNIK (13−23). . Eesti Teaduste Akadeemia Kirjastus.
3.3.
2011
Ojaveer, H.; Eek, L.; Kotta, J. (2011). Vee võõrliikide käsiraamat. Keskkonnaministeerium.
5.2.
2011
Lokko, Külli; Virro, Taavi; Kotta, Jonne (2011). The structure of zoopsammon communities of Lake Võrtsjärv and Lake Saadjärv (Estonia): a pilot study. Food webs and climate change: Nordic Benthological Meeting VIII; Aalborg, Denmark; 9–12 May, 2011. Aalborg: Aalborg University, 29.
5.2.
2011
Kersen, Priit; Kotta, Jonne; Kotta, Ilmar (2011). Historical alteration in macrofaunal community in the NE Baltic Sea. 46th European Marine Biology Symposium (EMBS), 12-16 September, Rovinj, Croatia. , 31−31.
5.2.
2011
Arula, T.; Kotta, J.; Lankov, A.; Simm, M.; Põlme, S. (2011). Diet composition and feeding activity of larval spring-spawning herring: importance of environmental variability. 35th Annual Larval Fish Conference; Wilmington, North Carolina, USA; May 22-25. Ed. Fred Scharf; Jeff Buckel; Tom Lankford., x−x.
1.1.
2010
Torn, K.; Martin, G.; Kotta, J.; Kupp, M. (2010). Effects of different types of mechanical disturbances on a charophyte dominated macrophyte community. Estuarine Coastal and Shelf Science, 87 (1), 27−32. DOI: 10.1016/j.ecss.2009.12.006.
1.1.
2010
Kotta, J.; Orav-Kotta, H.; Herkül, K. (2010). Separate and combined effects of habitat-specific fish predation on the survival of invasive and native gammarids. Journal of Sea Research, 369−372. DOI: 10.1016/j.seares.2010.05.006.
1.2.
2010
Kotta, K.; Kotta, J. (2010). Instrument in interaction with pitch content of selected works by Brahms, Saint-Saens, Hindemith, and Shostakovich. Journal of Interdisciplinary Music Studies, 4, 86−97.
1.2.
2010
Kotta, J.; Kotta, I. (2010). The first finding of the Ponto-Caspian mysid shrimp Hemimysis anomala G. O. Sars, Mysidae in the Estonian coastal sea. Estonian Journal of Ecology, 59 (3), 230−236. DOI: 10.3176/eco.2010.3.05.
3.1.
2010
Möller, Tiia; Kotta, Jonne; Martin, Georg (2010). Mapping of structural and functional characteristics of reef habitats. IEEE Conference Proceedings: The First International Conference on Biodiversity and Invasion Control; Cancun, Mexico; March 7-13, 2010. Ed. Dini, Petre; Popescu, Manuela. IEEE, 150−154. DOI: 10.1109/BioSciencesWorld.2010.27.
3.1.
2010
Kotta, Jonne; Orav-Kotta, Helen; Paalme, Tiina (2010). In situ Evidence on the Role of Benthic Invertebrates on the Decomposition of Drifting Algal Mats in a Brackish Water Ecosystem. Proceedings Of The First International Conference On Biosciences, (Biosciencesworld 2010): 1st International Conference on Biosciences (BioSciencesWorld), MAR 07-13, 2010, Cancun, MEXICO. Ed. Dini, P.; Popescu, M. Los Alamitos: Ieee Computer Soc, 139−144. DOI: 10.1109/BioSciencesWorld.2010.25.
3.1.
2010
Orav-Kotta, Helen; Kotta, Jonne; Kaljurand, Kaire; Kotta, Ilmar (2010). Seasonal changes in biodeposition and grazing potential of the suspension feeding bivalve Mytilus trossulus. Proceedings Of The First International Conference On Biosciences, (Biosciencesworld 2010): 1st International Conference on Biosciences (BioSciencesWorld), MAR 07-13, 2010, Cancun, MEXICO. Ed. Dini, P.; Popescu, M. Los Alamitos: Ieee Computer Soc, 145−149. DOI: 10.1109/BioSciencesWorld.2010.26.
3.4.
2010
Fetissov, M.; Aps, R.; Kopti, M.; Kotta, J. (2010). Web application to support the process of marine spatial planning. ICES C.M. Documents 2010 (Nantes, France): ICES Annual Science Conference, 20-24 September 2010, Nantes, France. Copenhagen, 1−10.
1.1.
2009
Möller, T.; Kotta, J.; Martin, G. (2009). Effect of observation method on the perception of community structure and water quality in a brackish water ecosystem. Marine Ecology, 30, 105−112. DOI: 10.1111/j.1439-0485.2009.00325.x.
1.1.
2009
Tomczak, M.T.; Järv, L.; Kotta, J.; Martin, G.; Minde, A.; Müller-Karulis, B.; Põllumäe, A.; Razinkovas, A.; Strake, S.; Bucas, M. (2009). Analysis of trophic networks and carbon flows in South Eastern Baltic coastal ecosystems. Progress in Oceanography, 81, 111−131.
1.1.
2009
Lauringson, V.; Kotta, J.; Orav-Kotta, H.; Kotta, I.; Herkül, K.; Põllumäe, A. (2009). Comparison of benthic and pelagic suspension feeding in shallow water habitats of the northeastern Baltic Sea. Marine Ecology, 30, 43−55.
1.1.
2009
Orav-Kotta, H.; Kotta, J.; Herkül, K.; Kotta, I.; Paalme, T. (2009). Seasonal variability in the grazing potential of the invasive amphipod Gammarus tigrinus and the native amphipod Gammarus salinus in the northern Baltic Sea. Biological Invasions, 11 (3), 597−608.
1.1.
2009
Herkül, K.; Kotta, J. (2009). Effects of eelgrass (Zostera marina) canopy removal and sediment addition on sediment characteristics and benthic communities in the northern Baltic Sea. Marine Ecology, 30, 74−82.
1.1.
2009
Põllumäe, A.; Kotta, J.; Leisk, Ü. (2009). Scale-dependent effects of nutrient loads and climatic conditions on benthic and pelagic communities in the Gulf of Finland. Marine Ecology, 30, 20−32.
1.1.
2009
Veber, T.; Kotta, J.; Lauringson, V.; Kotta, I. (2009). Influence of the local abiotic environment, weather and regional nutrient loading on macrobenthic invertebrate feeding groups in a shallow brackish water ecosystem. Oceanologia, 51 (4), 541−559.
1.1.
2009
Kotta, J.; Kotta, I.; Simm, M.; Põllupüü, M. (2009). Separate and interactive effects of eutrophication and climate variables on the ecosystem elements of the Gulf of Riga. Estuarine Coastal and Shelf Science, 84, 509−518.
1.2.
2009
Kovtun, A.; Torn, K.; Kotta, J. (2009). Long-term changes in a northern Baltic macrophyte community. Estonian Journal of Ecology, 58, 270−285.
1.2.
2009
Orav-Kotta, H.; Kotta, J.; Kotta, I. (2009). Food competition between the benthic polychaete Hediste diversicolor and the semipelagic mysid Neomysis integer in the northern Baltic Sea. Estonian Journal of Ecology, 58, 324−331.
1.2.
2009
Kotta, J.; Herkül, K.; Kotta, I.; Orav-Kotta, H.; Aps, R. (2009). Response of benthic invertebrate communities to the large-scale dredging of Muuga Port. Estonian Journal of Ecology, 58, 286−296.
1.2.
2009
Kersen, P.; Orav-Kotta, H.; Kotta, J.; Kukk, H. (2009). Effect of abiotic environment on the distribution of attached and drifting red alga Furcellaria lumbricalis in the Estonian coastal sea. Estonian Journal of Ecology, 58 (4), 245−258.
1.2.
2009
Kotta, J.; Möller, T. (2009). Important scales of distribution patterns of the key benthic species in Gretagrund area, the central Gulf of Riga. Estonian Journal of Ecology, 58, 259−269.
1.2.
2009
Herkül, K.; Kotta, J.; Püss, T.; Kotta, I. (2009). Crustacean invasions in the Estonian coastal sea. Estonian Journal of Ecology, 58, 313−323.
3.1.
2009
Kotta, J.; Aps, R.; Orav-Kotta, H. (2009). Bayesian inference for predicting ecological water quality under different climate change scenarios. In: Management of natural resources, sustainable development and hazards. (173−184). . WIT Press.
3.1.
2009
Aps, R.; Fetissov, M.; Herkül, K.; Kotta, J.; Leiger, R.; Mander, Ü.; Suursaar, Ü. (2009). Bayesian inference for predicting potential oil spill related ecological risk. In: Guarascio, M., Brebbia and Garzia, F. (Eds.) Safety and Security Engineering III. In: M. Guarascio, C.A. Brebbia, F. Garzia (Ed.). WIT Transactions on the Built Environment (149−159). . WIT Press. DOI: 10.2495/SAFE090151.
3.1.
2009
Leiger, R.; Aps, R.; Fetissov, M.; Herkül, K.; Kopti, M.; Kotta, J.; Mander, Ü.; Suursaar, Ü. (2009). Oil accident response simulation: allocation of potential places of refuge. In: C.A. Brebbia, G. Benassai, G.R. Rodriguez (Ed.). Coastal Processes (247−258). . Southampton, Boston: WIT Press. (WIT Transactions on Ecology and the Environment). DOI: 10.2495/CP090221.
3.1.
2009
Aps, R.; Herkül, K.; Kotta, J.; Kotta, I.; Kopti, M.; Leiger, R.; Mander, Ü.; Suursaar, Ü. (2009). Bayesian inference for oil spill related Net Environmental Benefit Analysis. In: C.A.Brebbia, G.Benassai, G.R.Rodriguez (Ed.). Coastal Processes (235−246). . Southampton, Boston: WIT Press. (WIT Transactions on Ecology and the Environment). DOI: 10.2495/CP090211.
3.1.
2009
Kotta, J.; Witman, J. (2009). Diversity patterns and their causes. Regional scale. In: Wahl, M. (Ed.). Hard Bottom Communities: Patterns, Scales, Dynamics, Functions, Shifts (89−99). . Springer Verlag. (Ecological Studies).
3.4.
2009
Järv, L.; Kotta, J.; Drevs, T.; Jaanus, A.; Raid, T.; Järvik, A. (2009). The impact of selected Baltic ports on adjacent fish fauna: revealed effects and uncertainties. Proceedings of the 13th International Maritime association of the Mediteranean (IMAM 2009); Istanbul, Turkey, 12-15 October 2009, 3: 13th Congress of International Maritime Association of Mediteranean (IMAM 2009); Istanbul, Turkey; 12-15 October 2009. Ed. Guedes Soares, C. Isyanbul Technical University, 853−862. (Towards the Sustainable Marine Technology and Transportation ).
5.2.
2009
Kersen, P.; Kotta, J.; Bučas, M.; Kolesova, N.; Deķere, Z. (2009). Macro-epiphytic community patterns of Fucus vesiculosus in the Baltic Sea and the North Sea in relation to different abiotic and biotic variables. Marine Biology in Time and Space: Abstracts from the 44th European Marine Biology Symposium, University of Liverpool, Liverpool. 196 pp.: 44th EMBS, Liverpool, 7-11 september 2009. Ed. Frid, C.L.J., Green, J.A., Paramor, O.A.L., Robinson, L.A. & Watts P.C. Liverpool, 87−87.
1.1.
2008
Kotta, J.; Paalme, T.; Kersen, P.; Martin, G.; Herkül, K.; Möller, T. (2008). Density dependent growth of the red algae Furcellaria lumbricalis and Coccotylus truncatus in the West-Estonian Archipelago Sea, northern Baltic Sea. Oceanologia, 50 (4), 577−585.
1.1.
2008
Kotta, J.; Paalme, T.; Püss, T.; Herkül, K.; Kotta, I. (2008). Contribution of scale-dependent environmental variability on the biomass patterns of drift algae and associated invertebrates in the Gulf of Riga, northern Baltic Sea. Journal of Marine Systems, 74, S116−S123.
3.1.
2008
Kotta, J.; Lauringson, V.; Martin, G.; Simm, M.; Kotta, I.; Herkül, K.; Ojaveer, H. (2008). Gulf of Riga and Pärnu Bay. In: Schiewer, U. (Ed.). Ecology of Baltic Coastal waters (217−243). . Berlin: Springer. (Ecological Studies; 197).
3.1.
2008
Orviku, K.; Tõnisson, H.; Aps, R.; Kotta, J.; Kotta, I.; Martin, G.; Suursaar, Ü.; Tamsalu, R.; Zalesny, V. (2008). Environmental impact of port construction: Port of Sillamäe case study (Gulf of Finlad, Baltic Sea). 2008 IEEE/OES US/EU-Baltic International Symposium: US/EU-Baltic International Symposium "Ocean Observations, Ecosystem-Based Management & Forecasting"; Tallinn; 27-29 May, 2008. IEEE-Inst Electrical Electronics Engineers Inc, 350−359. DOI: 10.1109/BALTIC.2008.4625538.
3.1.
2008
Kotta, J.; Herkül, K.; Kotta, I.; Orav-Kotta, H.; Aps, R. (2008). Effects of harbour dredging on soft bottom invertebrate communities: does environmental variability affect the community responses? 2008 IEEE/OES US/EU-Baltic International Symposium: 2008 IEEE/OES US/EU-Baltic International Symposium "Ocean Observations, Ecosystem-Based Management & Forecasting"; Tallinn; 27-29 May, 2008. IEEE-Inst Electrical Electronics Engineers Inc, 320−325.
3.1.
2008
Kotta, J.; Jaanus, A.; Kotta, I. (2008). Haapsalu and Matsalu Bay. In: Schiewer, U. (Ed.). Ecology of Baltic Coastal waters (245−258). . Berlin: Springer. (Ecological Studies; 197).
3.1.
2008
Kotta, J.; Aps, R.; Herkül, K. (2008). Predicting ecological resilience of marine benthic communities facing a high risk of oil spills. In: Coastal Environment 2008 (101−110). . WIT Press. (WIT Transactions on Ecology and the Environment).
3.1.
2008
Lindén, E.; Lehikoinen, A.; Kotta, J.; Aps, R; Pitkänen, H.; Räike, A.; Korpinen, P.; Kuikka, S. (2008). EVAGULF – Protection of the aquatic communities in the Gulf of Finland: risk-based policymaking. 2008 IEEE/OES US/EU-Baltic International Symposium: 2008 IEEE/OES US/EU-Baltic International Symposium "Ocean Observations, Ecosystem-Based Management & Forecasting"; Tallinn; 27-29 May, 2008. IEEE-Inst Electrical Electronics Engineers Inc, 219−230.
5.2.
2008
Paalme, T.; Kotta, J.; Kersen, P. (2008). Does the growth rate of drifting Furcellaria lumbricalis and Coccotylus truncatus depend on algal density and shares? Marine Ecosystems - The contribution of Marine Biology for a sustainable future: 43rd European marine Biology Symposium; Ponta Delgada; 8-12 September, 2008. , 77.
5.2.
2008
Aps, R.; Kotta, J.; Herkül, K.; Kaljuste, O. (2008). Baltic fisheries as a spatial resource. International Council for the Exploration of the Sea, Annual Science Conference 2008; Halifax, NS Canada; 22-26 September 2008. , 1−9.
1.1.
2007
Lauringson, Velda, Mälton, Evely, Kotta, Jonne, Kangur, Külli, Orav-Kotta, Helen, Kotta, Ilmar (2007). Environmental factors influencing the biodeposition of the suspension feeding bivalve Dreissena polymorpha (Pallas): comparison of brackish and fresh water population. Estuarine Coastal and Shelf Science, 75, 459−467.
1.1.
2007
Põllumäe, A.; Kotta, J. (2007). Factors affecting zooplankton community of the Gulf of Finland, with respect to native and introduced predatory cladoceran interactions. Oceanologia, 49, 277−290.
1.1.
2007
Kotta, J.; Lauringson, V.; Kotta, I. (2007). Response of zoobenthic communities to changing eutrophication in the northern Baltic Sea. Hydrobiologia, 580 (1), 97−108. DOI: 10.1007/s10750-006-0462-z.
1.1.
2007
Ojaveer, H.; Gollasch, S.; Jaanus, A.; Kotta, J.; Laine, AO.; Minde, A.; Normant, M.; Panov, V. (2007). Chinese mitten crab Eriocheir sinensis in the Baltic Sea—a supply-side invader? Biological Invasions, 9 (4), 409−418. DOI: 10.1007/s10530-006-9047-z.
1.2.
2007
Kotta, J.; Martin, G.; Aps, R. (2007). Sensitivity of benthic vegetation and invertebrate functional guilds to oil spill and its use in oil contingency management related negotiation process. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 56 (4), 255−269.
1.2.
2007
Herkül, K.; Kotta, J. (2007). New records of the amphipods Chelicorophium curvispinum, Gammarus tigrinus, G. duebeni, and G. lacustris in the Estonian coastal sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 56 (4), 290−296.
1.2.
2007
Kotta, I.; Kotta, J.; Herkül, K. (2007). Seasonal changes in the population structure and life cycle of Neomysis integer in Pärnu Bay, northeastern Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 56 (4), 312−325.
5.2.
2007
Paalme, T; Kotta, J; Kersen, P; Martin, G; Kukk, H; Torn, K (2007). Importance of local and regional environmental factors in the dynamics of the loose-lying red algal community in the Northern Baltic Sea. Fourth European Phycological Congress, Oviedo, Spain, 23-27 July 2007. Taylor & Francis, 157.
5.2.
2007
Aps, R.; Kotta, J.; Leiger, R.; Martin, G.; Saat, T.; Suursaar, Ü.; Tulk, E (2007). Net Environmental Benefit Analysis - linking ecological values in the decision making process on oil spill response in the Gulf of Finland (Baltic Sea). ICES Annual Science Conference 2007; Helsinki; 17-21 September 2007. , C:10.
5.2.
2007
Linden, E.; Lehikoinen, A.; Kuikka, S.; Aps, R.; Kotta, J.; Martin, G.; Saat, T.; Pitkänen, H.; Räoke, A.; Korpinen, P.; Sipa, T.; Kaitala, S.; Jolma, A. (2007). EVAGULF – Protection of aquatic communities in the Gulf of Finland: risk-based policymaking. International Council for the Exploration of the Sea, Annual Science Conference 2007; Helsinki, Finland; 17-21 September 2007. , 1−16.
5.2.
2007
Kotta, J.; Paalme, T.; Kersen, P.; Möller, T.; Herkül, K. (2007). Effect of community structure on the seasonal growth of the red algae Furcellaria lumbricalis and Coccotylus truncatus in the West-Estonian Archipelago, Northern Baltic Sea. XIXth International Seaweed Symposium: 26-31 March 2007 Kobe, Japan. , 114.
1.1.
2006
Vahtmäe, Ele; Kutser, Tiit; Martin, Georg; Kotta, Jonne (2006). Feasibility of hyperspectral remote sensing for mapping benthic macroalgal cover in turbid coastal waters - a Baltic Sea case study. Remote Sensing of Environment, 101 (3), 342−351.
1.1.
2006
Kotta, J.; Orav-Kotta, H.; Paalme, T.; Kotta, I.; Kukk, H. (2006). Seasonal changes in situ grazing of the mesoherbivores Idotea baltica and Gammarus oceanicus on the brown algae Fucus vesiculosus and Pylaiella littoralis in the Central Gulf of Finland, Baltic Sea. Hydrobiologia, 554, 117−125.
1.1.
2006
Herkül, K.; Kotta, J.; Kotta, I.; Orav-Kotta, H. (2006). Effects of physical disturbance, isolation and key macrozoobenthic species on community development, recolonisation and sedimentation processes. Oceanologia, 48S, 267−282.
1.1.
2006
Herkül, K.; Kotta, J.; Kotta, I. (2006). Distribution and population characteristics of the alien talitrid amphipod Orchestia cavimana in relation to environmental conditions in the northeastern Baltic Sea. Helgoland Marine Research, 60 (2), 121−126. DOI: 10.1007/s10152-006-0030-y.
1.1.
2006
Kotta, J.; Kotta, I.; Simm, M.; Lankov, A.; Lauringson, V.; Põllumäe, A.; Ojaveer, H. (2006). Ecological consequences of biological invasions: three invertebrate case studies in the north-eastern Baltic Sea. Helgoland Marine Research, 60 (2), 106−112.
1.1.
2006
Lauringson, V.; Kotta, J. (2006). Influence of the thin drift algal mats on the distribution of macrozoobenthos in Koiguste Bay, NE Baltic Sea. Hydrobiologia, 554, 97−105.
1.1.
2006
Simm, M.; Roots, O.; Kotta, J.; Lankov, A.; Henkelmann, B.; Shen, H.; Schramm, K.-W. (2006). PCDD/Fs in sprat (Sprattus sprattus balticus) from the Gulf of Finland, the Baltic Sea. Chemosphere, 65 (9), 1570−1575.
1.2.
2006
Alenius, P.; Antsulevich, A.; Basova, S.; Berezina, N. A.; Haapasaari, H.; Jaanus, A.; Jolma, K.; Kauppila, P.; Knuutila, S.; Korhonen, M.; Kotta, J.; Laine, A.; Leivuori, M.; Lips, U.; Litvinchuk, L. F.; Maximov, A. A.; Norkko, A.; Orlova, M. I.; Peltonen, H.; Pönni, J. ... Verta, M. (2006). State of the Gulf of Finland. Report Series of the Finnish Institute of Marine Research, 55, 1−25.
3.2.
2006
Kotta, J; Herkül, K; Kotta, I; Orav-Kotta, H. (2006). Invasion history and distribution of the key benthic alien invertebrate species in the Estonian coastal sea. In: Ojaveer, H.; Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and ecological impacts (12−17). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series; 14).
3.2.
2006
Kotta, J.; Kotta, I.; Orav-Kotta, H.; Lauringson, V. (2006). Potential impacts of key invasive benthic invertebrate species. In: Ojaveer, H., Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and assessment of ecological impacts (53−56). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series ; 14).
3.2.
2006
Herkül, K.; Kotta, J., Kotta, I. (2006). Invasion history and distribution of the semi-terrestrial invasive amphipod Orchestia cavimana in the Estonian coastal sea. In: Ojaveer, H.; Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and assessment of ecological impacts (25−33). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series; 14).
3.2.
2006
Põllumäe, A.; Kotta, I.; Kotta, J. (2006). Port biological sampling as a tool for monitoring invasive species in high-risk areas of bioinvasions. In: Ojaveer, H., Kotta, J. (Ed.). Alien invasive species in the north-eastern Baltic Sea : population dynamics and assessment of ecological impacts (40−46). . Tallinn: Eesti Mereinstituut. (Estonian Marine Institute report series ; 14).
4.2.
2006
Ojaveer, H.; Kotta, J. (Eds.) (2006). Alien invasive species in the North-eastern Baltic Sea : population dynamics and ecological impacts. Tallinn: Eesti Mereinstituut.
5.2.
2006
Simm, M; Roots, O; Kotta, J. (2006). Levels of dioxins in the Estonian fish. Support to the Management of Gulf of Finland Ecosustem - Key topics of Scientific Research: Trilateral Estonian-Finnish-Russian co-operation on the protection of environment of the Gulf of Finland; Tallinn, Estonia; 22-23 November 2006. Tallinn, 29.
6.7.
2006
Bruin de, E. F. L. M.; Vliegenthart, F. J. L.; Shipper, P.; Pallo, T.; Antons, P.; Botterweg, T.; Reincke, K. J.; Boomen van den, R.; Kotta, J.; Vassiljev, A.; Perens, R.; Vallner, L.; Kivinukk, A. (2006). Harju sub-River Basin District Water Management Plan. 1−253.
3.1.
2005
Kotta, J.; Orav-Kotta, H.; Vuorinen, I. (2005). Field measurements on the variability in biodeposition and grazing pressure of suspension feeding bivalves in the northern Baltic Sea. In: R. Dame, S. Olenin (Ed.). The Comparative Roles of Suspension Feeders in Ecosystems (11−29). . Dodrecht: Springer.
3.3.
2005
Tomczak, M.; Järv, L.; Kotta, J.; Martin, G.; Minde, A.; Müller-Karulis, B.; Põllumäe, A.; Razinkovas, A.; Strake, S. (2005). Trophic networks and carbon flows in South Eastern Baltic coastal ecosystems. In: ICES CM 2005. CD-ROM. . Copenhagen.
3.3.
2005
Suursaar, Ü; Astok, V.; Kotta, J. (2005). Monitoring and assessment of the Estonian coastal sea in 1945-2003. In: Velner, H.-A. (ed.). Water protection of the Gulf of Finland and Estonian waterbodies (127-144). . Tallinn: TUT Press.
6.4.
2005
Kangur, M.; Kotta, J.; Kukk, T.; Kull, T.; Lilleleht, V.; Luig, J.; Ojaveer, H.; Paalme, T.; Vetemaa, M. (2005). Invasiivsed võõrliigid Eestis. . Tallinn: Keskkonnaministeerium.
1.1.
2004
Kotta, Jonne; Simm, Mart; Kotta, Ilmar; Kanošina, Inga; Kallaste, Kalle; Raid, Tiit (2004). Factors controlling long-term changes of the eutrophicated ecosystem of Pärnu Bay, Gulf of Riga. Hydrobiologia, 514, 259−268. DOI: 10.1023/B:hydr.0000018224.56324.44.
1.1.
2004
Kotta, J.; Torn, K.; Martin, G.; Orav-Kotta, H.; Paalme, T. (2004). Seasonal variation in invertebrate grazing on Chara connivens and C-tomentosa in Koiguste Bay, NE Baltic Sea. Helgoland Marine Research, 58 (2), 71−76.
1.1.
2004
Orav-Kotta, H.; Kotta, J. (2004). Food and habitat choice of the isopod Idotea baltica in the northeastern Baltic Sea. Hydrobiologia, 514, 79−85.
1.2.
2004
Paalme, Tiina; Martin, Georg; Kotta, Jonne; Kukk, Henn; Kaljurand, Kaire (2004). Distribution and dynamics of drifting macroalgal mats in Estonian coastal waaters during 1995-2003. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53 (4), 260−275.
1.2.
2004
Martin, G.; Kukk, E.; Kukk, H.; Kotta, J. (2004). Historical review of the literature on phytobenthic investigations in the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53, 236−250.
1.2.
2004
Kotta, J.; Martin, G. (2004). Foreword to the special issue on the Estonian coastal sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53 (4), 233−235.
1.2.
2004
Kotta, J.; Orav-Kotta, H.; Sandberg-Kilpi, E. (2004). Changes in the feeding behaviour of benthic invertebrates: effect of the introduced polychaete Marenzelleria viridis on the Baltic clam Macoma balthica. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 53, 269−275.
1.2.
2004
Orav-Kotta, H.; Kotta, J.; Kotta, I. (2004). Comparison of macrozoobenthic communities between the 1960s and the 1990s-2000s in the Väinameri, NE Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology, 53 (4), 283−291.
5.2.
2004
Kotta, J.; Lauringson, V.; Kotta, I. (2004). Role of benthic diversity and physical environment on the stability of zoobenthos communities along the eutrophication gradient. Biologia Marina Mediterranea, 11, 30.
6.3.
2004
Kotta, J.; Kotta, I.; Orav-Kotta, H. (2004). Muuga lahe põhjaloomastik - looduslik muutlikkus ja inimmõju. Estonia Maritima (53−72). .
1.1.
2003
Kotta, J.; Olafsson, E. (2003). Competition for food between the introduced polychaete Marenzelleria viridis (Verrill) and the native amphipod Monoporeia affinis Lindstrom in the Baltic Sea. Journal of Sea Research, 50 (1), 27−35.
1.2.
2003
Kotta, J.; Martin, G.; Torn, K. (2003). Benthic communities of four selected habitat types in the sea area of Lahemaa National Park southern Gulf of Finland. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52 (3), 236−253.
1.2.
2003
Martin, G.; Torn, K.; Kotta, J.; Orav-Kotta, H. (2003). Estonian marine phytobenthos monitoring programme: preliminary results and future perspectives. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52 (2), 112−124.
1.2.
2003
Kotta, J.; Orav-Kotta, H.; Paalme, T.; Kotta, I.; Kukk, H. (2003). Benthos studies in the Estonian coastal sea during 1998-2001. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52 (2), 85−90.
1.2.
2003
Orav-Kotta, H.; Kotta, J. (2003). Seasonal variations in the grazing of Gammarus oceanicus, Idotea baltica, and Palaemon adspersus on benthic macroalgae. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 141−148.
1.2.
2003
Kotta, I.; Orav-Kotta, H.; Kotta, J. (2003). Macrozoobenthos assemblages in highly productive areas of the Estonian coastal sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 149−165.
1.2.
2003
Pitkänen, H.; Lehtoranta, J.; Peltonen, H.; Laine, A.; Kotta, J.; Kotta, I.; Moskalenko, P.; Mäkinen, A.; Kangas, P.; Perttilä, M.; Kiirikki, M. (2003). Benthic release of phosphorus and its relation to environmental conditions in the estuarial Gulf of Finland, Baltic Sea, in the early 2000s. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 173−192.
1.2.
2003
Kotta, J. (2003). Foreword to the special issue on Estonian coastal ecosystems: state, processes, and development. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 52, 83−84.
3.5.
2003
Ojaveer, H.; Simm, M.; Kotta, J. (2003). Tulnukliikide tähtsus globaliseeruvas maailmas: veeökosüsteemid. Kaasaegse ökoloogia probleemid. Eesti IX Ökoloogiakonverentsi lühiartiklid: Eesti IX ökoloogiakonverents, 11.-12. IV 2003, Tartu. , 185−192.
1.1.
2002
Paalme, T.; Kukk, H.; Kotta, J.; Orav, H. (2002). 'In vitro'  and 'in situ' decomposition of nuisance macroalgae Cladophora glomerata and Pilayella littoralis . Hydrobiologia, 475-476 (1), 469−476. DOI: 10.1023/A:1020364114603.
1.1.
2002
Kotta, J.; Mohlenberg, F. (2002). Grazing impact of Mytilus edulis L. and Dreissena polymorpha (Pallas) in the Gulf of Riga, Baltic Sea estimated from biodeposition rates of algal pigments. Annales Zoologici Fennici, 39 (2), 151−160.
3.1.
2002
Zettler, M.L.; Daunys, D.; Kotta, J.; Bick, A. (2002). History and success of an invasion into the Baltic Sea: the polychaete Marenzelleria cf. viridis, development and strategies. Leppäkoski, E., Gollasch, S. & Olenin, S.. Invasive Aquatic Species of Europe – Distribution, Impacts and Management (66−75). . Dordrecht: Kluwer Academic Publishers.
3.2.
2002
Martin, G.; Torn, K.; Kotta, J.; Orav-Kotta, H. (2002). Rannikumere põhjataimestiku seire. Eesti keskkonnaseire : 2001, 95−97.
3.2.
2002
Kotta, J.; Kotta, I.; Kangas, P.; Laine, A.; Andersin, A.-B. (2002). Macrozoobenthos. Baltic Sea Environmental Proceedings, 82B, 83−86.
3.2.
2002
Ceitlina, M.; Kotta, J. (2002). Macrozoobenthos. Baltic Sea Environmental Proceedings, 82B, 94−97.
3.3.
2002
Jüssi, I.; Kannukene, L.; Kask, J.; Kotta, I.; Kotta, J.; Kukk, H.; Leito, T.; Mägi, E.; Mäss, V.; Nilson, E.; Peil, T.; Ploompuu, T.; Puurmann, E.; Rammul, Ü.; Ratas, U.; Rivis, R.; Truus, L. (2002). Alasti maailm: Kolga lahe saared. Tallinn: Säästva Eesti Instituut.
6.3.
2002
Kotta, I.; Kotta, J. (2002). Põhjaloomastik. Peil, T., Ratas, U., Nilson, E.. Alasti maailm Kolga lahe saared (47−48). . Tallinn: Säästva Eesti Instituut.
1.1.
2001
Kotta, J.; Orav, H. (2001). Role of benthic macroalgae in regulating macrozoobenthic assemblages in the Vainameri (north-eastern Baltic Sea). Annales Zoologici Fennici, 38 (2), 163−171.
1.1.
2001
Kotta, J.; Orav, H.; Sandberg-Kilpi, E. (2001). Ecological consequence of the introduction of the polychaete Marenzelleria cf. viridis into a shallow-water biotope of the northern Baltic Sea. Journal of Sea Research, 46, 273−280.
1.1.
2001
Kotta, J.; Boucher, G. (2001). Interregional variation of free-living nematode assemblages in tropical coral sands. Cahiers de Biologie Marine, 42 (4), 315−326.
1.2.
2001
Kotta, I.; Kotta, J. (2001). Vertical migrations of mysids in the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 50, 248−255.
1.2.
2001
Kotta, I.; Kotta, J. (2001). Distribution of mysids on the bank slopes in the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 50, 14−21.
6.3.
2001
Kotta, J. (2001). Tulnukliigid Läänemeres. Loodus, 14−15.
1.1.
2000
Kotta, J.; Paalme, T.; Martin, G.; Makinen, A. (2000). Major changes in macroalgae community composition affect the food and habitat preference of Idotea baltica. International Review of Hydrobiology, 85, 697−705.
1.2.
2000
Orav, H.; Kotta, J.; Martin, G. (2000). Factors affecting the distribution of benthic invertebrates in the phytal zone of the north-eastern Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 49(3), 253−269.
1.2.
2000
Orav, H.; Kotta, J.; Martin, G. (2000). Factors affecting the distribution of benthic invertebrates in the phytal zone of the north-eastern part Baltic Sea. In: Proceedings of the Estonian Academy of Sciences. Biology. Ecology. (253−269). . Tallinn: Estonian Academy Publishers.
1.2.
2000
Simm, M.; Kotta, J. (2000). Changes in copper and cadmium content of male herring in relation to spawning. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 49, 327−334.
1.2.
2000
Kotta, J. (2000). First record of the talitrid amphipod Orchestia cavimana in the northern Baltic Sea. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 49 (2), 221−224.
1.2.
2000
Kotta, J.; Kotta, I.; Viitasalo, I. (2000). Effect of diffuse and point source nutrient supply on the low diverse macrozoobenthic communities of the northern Baltic Sea. Boreal Environment Research, 5, 235−242.
2.3.
2000
Kotta, Jonne (2000). Impact of eutrophication and biological invasions on the structure and functions of benthic macrofauna. (Tartu Ülikool.; Bioloogia-geograafiateaduskond.; Tartu Ülikool.; Zooloogia ja hüdrobioloogia institu). Tartu: Tartu University Press.
1.1.
1999
Ojaveer, H.; Lankov, A.; Eero, M.; Kotta, J.; Kotta, I.; Lumberg, A. (1999). Changes in the ecosystem of the Gulf of Riga from the 1970s to the 1990s. ICES Journal of Marine Science, 56, 33−40.
1.2.
1999
Kotta, Jonne; Kotta, Ilmar; Kask, Jüri (1999). Benthic animal communities of exposed bays in the outermost part of the Gulf of Finland. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 2, 107−116.
1.2.
1999
Kotta, J.; Kotta, I. (1999). Benthic animal communities around Osmussaar Island. In: Estonia Maritima (133−142). .
1.2.
1999
Kotta, I.; Kotta, J. (1999). Distribution and migration of mysids in the Gulf of Riga (Northern Baltic). Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 48 (4), 284−295.
6.3.
1999
Kotta, J. (1999). Ökoloogiline rulett merevees. Eesti Loodus, 343−344.
1.2.
1998
Kotta, J.; Kotta, I.; Martin, G.; Kukk, H. (1998). A survey of data published on the littoral zoobenthos of the Gulf of Riga. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 47 (2), 83−97.
1.2.
1998
Kotta, J.; Orav, H.; Kotta, I. (1998). Distribution and filtration activity of Zebra mussel, Dreissena polymorpha (Pallas) in the Gulf of Riga and the Gulf of Finland. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 47, 32−41.
1.2.
1998
Kotta, J.; Kotta, I. (1998). Distribution and invasion ecology of Marenzelleria viridis (Verrill) in the Estonian coastal waters. In: Proceedings of the Estonian Academy of Sciences. Biology. Ecology. (210−217). . Tallinn: Estonian Academy Publishers.
3.3.
1996
Kukk, Henn; Martin, G.; Jaanus, A.; Martin, Jüri; Bogdanov, Verge; Põllumäe, A.; Kotta, Ilmar; Kotta, Jonne (1996). Merebioloogia. Keskkonnaseire 1995 (70−72). . Tallinn : EV KKM,: /.../.
6.7.
1996
Kotta, Jonne (1996). Regression between length and weight of Baltic Clam Macoma balthica(L.) (Mollusca) in relation to abiotic and biotic characteristics of the habitat. (Magistritöö). Tartu,: Tartu University Press.
1.2.
1995
Kotta, J.; Kotta, I. (1995). The state of macrozoobenthos of Pärnu Bay in 1991 as compared to 1959-1960. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 5, 26−37.
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