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Mari Kalda - Kroon

https://www.etis.ee/CV/Mari_Kalda_001/est

Teenistuskäik

Töökohad ja ametid
01.01.2017–...   
Tallinna Tehnikaülikool, Loodusteaduskond, Küberneetika instituut, Teadur (1,00)
01.04.2016–31.12.2016   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, Teadur (1,00)
2007–31.03.2016   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, insener (1,00)
2005–2007   
Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut, insener (0,25)
 
 
Haridustee
2007–2015   
Tallinna Tehnikaülikool, Loodusteaduste doktor, Tehniline füüsika
2005–2007   
Tallinna Tehnikaülikool, Loodusteaduste magister, Tehniline füüsika
2001–2005   
Tallinna Tehnikaülikool, Loodusteaduste bakalaureus, Tehniline füüsika

Kvalifikatsioon

Teaduskraadid
Mari Kalda - Kroon, doktorikraad, 2015, (juh) Marko Vendelin; Pearu Peterson, Mechanoenergetics of a single cardiomyocyte (Ühe südameraku mehaanoenergeetika), Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut.
Mari Kalda - Kroon, magistrikraad, 2007, (juh) Arvi Ravasoo, Lainete interaktsioon tugevalt mittehomogeenses materjalis, Tallinna Tehnikaülikool, TTÜ Küberneetika Instituut.
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.12. Bio- ja keskkonnateadustega seotud uuringud, näiteks biotehnoloogia, molekulaarbioloogia, rakubioloogia, biofüüsika, majandus- ja tehnoloogiauuringud; TÄPSUSTUS: Südamelihase biofüüsika

Jooksvad projektid

Lõppenud projektid

Publikatsioonid

Klass
Aasta
Publikatsioon
 
1.1.
2020
Kalda, Mari; Vendelin, Marko (2020). Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridges. Scientific Reports, 10 (1), 5530. DOI: 10.1038/s41598-020-62452-7.
1.1.
2020
Vendelin, Marko; Laasmaa, Martin; Kalda, Mari; Branovets, Jelena; Karro, Niina; Barsunova, Karina; Birkedal, Rikke (2020). IOCBIO Kinetics: An open-source software solution for analysis of data traces. Plos Computational Biology, 16 (12), e1008475. DOI: 10.1371/journal.pcbi.1008475.
5.1.
2018
Kalda, Mari; Vendelin, Marko (2018). Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridges. Biophysical Journal, 114 (3, Supplement 1), 549a. DOI: 10.1016/j.bpj.2017.11.2998.
5.1.
2016
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2016). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. Biophysical Journal, 110 (3, Supplement 1), 463a. DOI: 10.1016/j.bpj.2015.11.2481.
1.1.
2015
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2015). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. PLoS ONE, 10 (9), e0137438, 1−26. DOI: 10.1371/journal.pone.0137438.
2.3.
2015
Kalda, Mari (2015). Mechanoenergetics of a single cardiomyocyte. (Doktoritöö, Tallinn University of Technology, Institute of Cybernetics, Laboratory of Systems Biology). Tallinn: TUT Press.
1.1.
2013
Peterson, Pearu; Kalda, Mari; Vendelin, Marko (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. American Journal of Physiology - Cell Physiology, 304 (6), C519−C531.10.1152/ajpcell.00032.2012.
3.1.
2013
Kalda, Mari; Peterson, Pearu; Engelbrecht, Jüri; Vendelin, Marko (2013). A cross-bridge model describing the mechanoenergetics of actomyosin interaction. Computer Models in Biomechanics : From Nano to Macro. Toim. Holzapfel, Gerhard A.; Kuhl, Ellen. Dordrecht: Springer, 91−102. DOI: 10.1007/978-94-007-5464-5_7.
5.1.
2013
Kalda, Mari; Vendelin, Marko; Peterson, Pearu (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. Biophysical Journal, 104, 509a. DOI: 10.1016/j.bpj.2012.11.2812.
5.1.
2012
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2012). Incorporating cooperativity into Huxley-type cross-bridge models in thermodynamically consistent way. Biophysical Journal, 102, 357a. DOI: 10.1016/j.bpj.2011.11.1950.
1.1.
2010
Illaste, Ardo; Kalda, Mari; Schryer, David W.; Sepp, Mervi (2010). Life of mice - development of cardiac energetics. The Journal of Physiology, 588 (23), 4617−4619.10.1113/jphysiol.2010.199901.
5.1.
2009
Kalda, Mari; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. The Journal of Physiological Sciences, 59, 362.
5.2.
2009
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. ESMC2009 : Proceedings of the 7th EUROMECH Solid Mechanics Conference. Book of Abstracts : Mini-Symposia. Ed. Ambrósio, Jorge A.C.; Silva, Miguel P.T. Lisbon: Portuguese Association for Theoretical, Applied and Computational Mechanics, 331.
5.2.
2009
Vendelin, Marko; Kalda, Mari; Peterson, Pearu (2009). Mechanoenergetics of actomyosin interaction analyzed by cross-bridge model. ENUMATH 2009 : June 29 - July 3 2009, Uppsala University, Sweden : Programme & Abstracts. 284.
5.2.
2009
Kalda, Mari; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by cross-bridge model. Biophysical Journal, 96, 621a. DOI: 10.1016/j.bpj.2008.12.3285.
5.2.
2009
Kalda, Mari; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. 36th International Congress of Physiological Sciences (IUPS2009) : July 27-August 1, 2009, Kyoto, Japan. The Physiological Society of Japan, [1].
14.01.2021

Mari Kalda - Kroon

https://www.etis.ee/CV/Mari_Kalda_001/eng

Career

Institutions and positions
01.01.2017–...   
Tallinn University of Technology , School of Science, Department of Cybernetics, Researcher (1,00)
01.04.2016–31.12.2016   
Tallinn University of Technology , Institute of Cybernetics at TUT, Researcher (1,00)
2007–31.03.2016   
Tallinn University of Technology , Institute of Cybernetics at TUT, Engineer (1,00)
2005–2007   
Tallinn University of Technology , Institute of Cybernetics at TUT, Engineer (0,25)
 
 
Education
2007–2015   
Tallinn University of Techology, Phd of Science in Natural Sciences, major:Engineering Physics
2005–2007   
Tallinn University of Techology, Master of Science in Natural Sciences, major:Engineering Physics
2001–2005   
Tallinn University of Techology, Bachelor degree, major:Engineering Physics

Qualifications

Academic degrees
Mari Kalda - Kroon, Doctor's Degree, 2015, (sup) Marko Vendelin; Pearu Peterson, Mechanoenergetics of a single cardiomyocyte, Tallinn University of Technology Institute of Cybernetics at TUT.
Mari Kalda - Kroon, Master's Degree, 2007, (sup) Arvi Ravasoo, Lainete interaktsioon tugevalt mittehomogeenses materjalis (Wave interaction in strongly inhomogeneous material), Tallinn University of Technology Institute of Cybernetics at TUT.
 
 
Fields of research
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.12. Biotechnology, Molecular Biology, Cell Biology, Biophysics and Economic and Technological Research relating to Bio- and Environmental Sciences; SPECIFICATION: Biophysics of heart
 
 

Projects in progress

Completed projects

Publications

Category
Year
Publication
 
1.1.
2020
Kalda, Mari; Vendelin, Marko (2020). Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridges. Scientific Reports, 10 (1), 5530. DOI: 10.1038/s41598-020-62452-7.
1.1.
2020
Vendelin, Marko; Laasmaa, Martin; Kalda, Mari; Branovets, Jelena; Karro, Niina; Barsunova, Karina; Birkedal, Rikke (2020). IOCBIO Kinetics: An open-source software solution for analysis of data traces. Plos Computational Biology, 16 (12), e1008475. DOI: 10.1371/journal.pcbi.1008475.
5.1.
2018
Kalda, Mari; Vendelin, Marko (2018). Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridges. Biophysical Journal, 114 (3, Supplement 1), 549a. DOI: 10.1016/j.bpj.2017.11.2998.
5.1.
2016
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2016). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. Biophysical Journal, 110 (3, Supplement 1), 463a. DOI: 10.1016/j.bpj.2015.11.2481.
1.1.
2015
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2015). Cross-bridge group ensembles describing cooperativity in thermodynamically consistent way. PLoS ONE, 10 (9), e0137438, 1−26. DOI: 10.1371/journal.pone.0137438.
2.3.
2015
Kalda, Mari (2015). Mechanoenergetics of a single cardiomyocyte. (Doktoritöö, Tallinn University of Technology, Institute of Cybernetics, Laboratory of Systems Biology). Tallinn: TUT Press.
1.1.
2013
Peterson, Pearu; Kalda, Mari; Vendelin, Marko (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. American Journal of Physiology - Cell Physiology, 304 (6), C519−C531.10.1152/ajpcell.00032.2012.
3.1.
2013
Kalda, Mari; Peterson, Pearu; Engelbrecht, Jüri; Vendelin, Marko (2013). A cross-bridge model describing the mechanoenergetics of actomyosin interaction. Computer Models in Biomechanics : From Nano to Macro. Toim. Holzapfel, Gerhard A.; Kuhl, Ellen. Dordrecht: Springer, 91−102. DOI: 10.1007/978-94-007-5464-5_7.
5.1.
2013
Kalda, Mari; Vendelin, Marko; Peterson, Pearu (2013). Real-time determination of sarcomere length of a single cardiomyocyte during contraction. Biophysical Journal, 104, 509a. DOI: 10.1016/j.bpj.2012.11.2812.
5.1.
2012
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2012). Incorporating cooperativity into Huxley-type cross-bridge models in thermodynamically consistent way. Biophysical Journal, 102, 357a. DOI: 10.1016/j.bpj.2011.11.1950.
1.1.
2010
Illaste, Ardo; Kalda, Mari; Schryer, David W.; Sepp, Mervi (2010). Life of mice - development of cardiac energetics. The Journal of Physiology, 588 (23), 4617−4619.10.1113/jphysiol.2010.199901.
5.1.
2009
Kalda, Mari; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. The Journal of Physiological Sciences, 59, 362.
5.2.
2009
Kalda, Mari; Peterson, Pearu; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. ESMC2009 : Proceedings of the 7th EUROMECH Solid Mechanics Conference. Book of Abstracts : Mini-Symposia. Ed. Ambrósio, Jorge A.C.; Silva, Miguel P.T. Lisbon: Portuguese Association for Theoretical, Applied and Computational Mechanics, 331.
5.2.
2009
Vendelin, Marko; Kalda, Mari; Peterson, Pearu (2009). Mechanoenergetics of actomyosin interaction analyzed by cross-bridge model. ENUMATH 2009 : June 29 - July 3 2009, Uppsala University, Sweden : Programme & Abstracts. 284.
5.2.
2009
Kalda, Mari; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by cross-bridge model. Biophysical Journal, 96, 621a. DOI: 10.1016/j.bpj.2008.12.3285.
5.2.
2009
Kalda, Mari; Vendelin, Marko (2009). Mechanoenergetics of actomyosin interaction analyzed by a cross-bridge model. 36th International Congress of Physiological Sciences (IUPS2009) : July 27-August 1, 2009, Kyoto, Japan. The Physiological Society of Japan, [1].
14.01.2021